Wall clock time and date at job start Tue Mar 31 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 H 1.09005 * 109.47229 * 306.72591 * 3 2 1 5 5 C 1.50704 * 109.47392 * 186.73240 * 3 2 1 6 6 H 1.08003 * 120.00035 * 239.99986 * 5 3 2 7 7 C 1.37878 * 119.99904 * 59.99387 * 5 3 2 8 8 N 1.31510 * 120.00235 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99671 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47634 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46924 * 120.00586 * 9 7 5 12 12 H 1.48498 * 109.47447 * 240.00072 * 9 7 5 13 13 N 1.46498 * 109.47371 * 66.72857 * 3 2 1 14 14 C 1.34778 * 120.00173 * 267.54228 * 13 3 2 15 15 O 1.21278 * 119.99957 * 5.91284 * 14 13 3 16 16 C 1.50703 * 120.00115 * 185.63129 * 14 13 3 17 17 C 1.52996 * 109.46936 * 307.37812 * 16 14 13 18 18 C 1.53004 * 109.46855 * 67.37386 * 16 14 13 19 19 C 1.50692 * 109.46974 * 187.37612 * 16 14 13 20 20 C 1.38263 * 120.00051 * 243.10046 * 19 16 14 21 21 C 1.38213 * 120.00430 * 179.74616 * 20 19 16 22 22 C 1.38256 * 119.99294 * 0.54886 * 21 20 19 23 23 C 1.38216 * 120.00408 * 359.70761 * 22 21 20 24 24 C 1.38216 * 120.00181 * 63.37542 * 19 16 14 25 25 C 1.50695 * 119.99963 * 0.02562 * 24 19 16 26 26 H 1.08999 * 109.47314 * 302.40151 * 1 2 3 27 27 H 1.09003 * 109.47033 * 62.40871 * 1 2 3 28 28 H 1.09003 * 109.46883 * 182.40064 * 1 2 3 29 29 H 1.09002 * 109.47675 * 239.99750 * 2 1 3 30 30 H 1.09000 * 109.47080 * 119.99714 * 2 1 3 31 31 H 0.96997 * 120.00012 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00014 * 87.53928 * 13 3 2 33 33 H 1.09003 * 109.47958 * 62.83249 * 17 16 14 34 34 H 1.09004 * 109.47176 * 182.83097 * 17 16 14 35 35 H 1.09000 * 109.47225 * 302.82603 * 17 16 14 36 36 H 1.09002 * 109.46749 * 60.00526 * 18 16 14 37 37 H 1.08999 * 109.46682 * 179.97438 * 18 16 14 38 38 H 1.08994 * 109.47095 * 300.00146 * 18 16 14 39 39 H 1.08005 * 119.99662 * 0.02562 * 20 19 16 40 40 H 1.07991 * 120.00547 * 180.27255 * 21 20 19 41 41 H 1.08002 * 119.99656 * 179.72558 * 22 21 20 42 42 H 1.07997 * 120.00109 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47266 * 95.32226 * 25 24 19 44 44 H 1.08997 * 109.47087 * 215.32419 * 25 24 19 45 45 H 1.09000 * 109.47222 * 335.32476 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5816 1.9899 -0.8237 5 6 3.5377 1.4458 -0.1666 6 1 4.1650 1.8827 0.5965 7 6 4.1073 0.8911 -1.2930 8 7 3.3436 0.3595 -2.2223 9 14 5.9639 0.8946 -1.4991 10 1 6.5915 1.5470 -0.3218 11 1 6.4524 -0.5035 -1.6086 12 1 6.3239 1.6426 -2.7304 13 7 1.6882 2.0848 1.2688 14 6 0.5384 2.7797 1.3764 15 8 -0.2553 2.7845 0.4595 16 6 0.2361 3.5456 2.6386 17 6 0.3773 2.6158 3.8455 18 6 1.2178 4.7112 2.7753 19 6 -1.1718 4.0791 2.5774 20 6 -1.3949 5.4436 2.5810 21 6 -2.6860 5.9331 2.5195 22 6 -3.7550 5.0580 2.4660 23 6 -3.5324 3.6939 2.4678 24 6 -2.2406 3.2044 2.5235 25 6 -1.9979 1.7171 2.5264 26 1 -0.3634 0.5507 0.8677 27 1 -0.3633 0.4760 -0.9108 28 1 -0.3633 -1.0268 0.0430 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7443 -0.0304 -3.0149 32 1 2.2829 2.0100 2.0315 33 1 1.4082 2.2696 3.9189 34 1 0.1100 3.1562 4.7536 35 1 -0.2859 1.7594 3.7238 36 1 1.1172 5.3736 1.9155 37 1 0.9989 5.2654 3.6880 38 1 2.2362 4.3253 2.8195 39 1 -0.5599 6.1271 2.6272 40 1 -2.8599 6.9989 2.5179 41 1 -4.7641 5.4404 2.4224 42 1 -4.3675 3.0104 2.4264 43 1 -2.0804 1.3375 3.5448 44 1 -2.7387 1.2268 1.8949 45 1 -0.9991 1.5112 2.1417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183865166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:58 Heat of formation + Delta-G solvation = -38.921200 kcal Electronic energy + Delta-G solvation = -24391.629361 eV Core-core repulsion = 21179.930224 eV Total energy + Delta-G solvation = -3211.699137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.84294 -39.69471 -37.01828 -36.11446 -34.22384 -33.76027 -32.62311 -30.59247 -28.96866 -28.54222 -27.41466 -25.38555 -24.55300 -22.89935 -22.22296 -21.38276 -20.43253 -18.74693 -17.59570 -17.37642 -16.94885 -16.58347 -16.21682 -15.74196 -15.50649 -15.07042 -14.98220 -14.62496 -14.52410 -14.04536 -13.81638 -13.57401 -13.30672 -13.16451 -13.13870 -12.97196 -12.93842 -12.87401 -12.81562 -12.66438 -12.62342 -12.11761 -12.07144 -11.95583 -11.67991 -11.51903 -11.30555 -11.05300 -10.56122 -10.35062 -9.63309 -9.55262 -9.37184 -8.14269 -6.31386 0.51863 0.57345 1.43344 1.44937 1.56255 1.94049 2.37786 2.64641 3.02861 3.15176 3.58622 3.85900 4.02809 4.13471 4.14743 4.20067 4.30304 4.40643 4.50325 4.60428 4.66203 4.72745 4.75272 4.77907 4.82226 4.85958 4.90700 4.94078 5.00918 5.12015 5.16341 5.24334 5.29217 5.30133 5.40271 5.51111 5.59144 5.65247 5.68007 5.68536 5.82143 5.85101 6.00650 6.21055 6.21899 6.78333 7.06592 7.36299 7.66861 8.90711 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.004608 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.193973 B = 6075.583300 C = 6512.665026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.545 4.545 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.704 5.704 14 C 0.513 3.487 15 O -0.579 6.579 16 C -0.039 4.039 17 C -0.152 4.152 18 C -0.138 4.138 19 C -0.071 4.071 20 C -0.126 4.126 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.137 4.137 24 C -0.075 4.075 25 C -0.125 4.125 26 H 0.058 0.942 27 H 0.018 0.982 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.400 0.600 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.405 7.164 14.987 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.583 4.583 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.353 5.353 14 C 0.300 3.700 15 O -0.460 6.460 16 C -0.043 4.043 17 C -0.209 4.209 18 C -0.195 4.195 19 C -0.072 4.072 20 C -0.144 4.144 21 C -0.153 4.153 22 C -0.143 4.143 23 C -0.155 4.155 24 C -0.075 4.075 25 C -0.181 4.181 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.923 7.074 14.145 18.159 hybrid contribution 1.098 -0.270 -0.673 1.316 sum -7.825 6.804 13.472 17.001 Atomic orbital electron populations 1.21782 0.97148 0.99386 1.00593 1.21759 0.93768 0.99220 1.01185 1.18318 0.93619 0.89301 0.81090 0.98563 1.21653 0.91828 1.38960 1.05877 0.91203 1.25743 1.02941 0.94498 0.95244 1.70059 1.36725 1.39038 1.09593 0.85375 0.79504 0.77778 0.78143 1.18402 1.20480 1.21221 1.46221 1.21505 1.52249 1.15342 1.20812 0.81105 0.78937 0.89184 1.90675 1.48145 1.64408 1.42746 1.19746 0.93888 0.97009 0.93631 1.22229 1.03553 0.99297 0.95829 1.21922 0.98128 0.96377 1.03086 1.19400 0.93044 0.93872 1.00852 1.21383 0.98284 0.94486 1.00215 1.21388 0.92277 1.00793 1.00823 1.21408 1.00084 0.93016 0.99795 1.21229 0.96103 0.96480 1.01728 1.19824 0.93418 0.95915 0.98383 1.21221 1.02666 0.92084 1.02147 0.92295 0.96240 0.93575 0.91290 0.93903 0.92747 0.76504 0.90723 0.89605 0.91111 0.93198 0.88621 0.91142 0.84459 0.83851 0.83893 0.85068 0.89390 0.92412 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.78 71.98 0.63 -5.27 16 2 C -0.12 -5.88 5.45 30.59 0.17 -5.72 16 3 C 0.28 14.28 2.19 44.25 0.10 14.38 16 4 H 0.00 -0.22 7.43 -2.38 -0.02 -0.24 16 5 C -0.54 -28.73 8.74 25.60 0.22 -28.50 16 6 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 7 C 0.02 0.84 5.28 84.66 0.45 1.29 16 8 N -0.92 -52.63 11.29 21.45 0.24 -52.39 16 9 Si 0.97 42.14 29.54 68.60 2.03 44.16 16 10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 13 N -0.70 -28.54 4.76 -446.09 -2.12 -30.66 16 14 C 0.51 19.97 3.74 87.66 0.33 20.30 16 15 O -0.58 -27.59 12.49 -3.02 -0.04 -27.63 16 16 C -0.04 -1.13 0.64 -53.68 -0.03 -1.17 16 17 C -0.15 -3.45 7.88 71.98 0.57 -2.89 16 18 C -0.14 -3.33 7.11 71.98 0.51 -2.82 16 19 C -0.07 -2.11 4.26 -19.87 -0.08 -2.19 16 20 C -0.13 -3.27 8.98 22.27 0.20 -3.07 16 21 C -0.14 -3.09 10.05 22.27 0.22 -2.87 16 22 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 23 C -0.14 -3.59 9.72 22.27 0.22 -3.37 16 24 C -0.08 -2.24 5.23 -19.87 -0.10 -2.35 16 25 C -0.13 -3.64 7.55 71.23 0.54 -3.10 16 26 H 0.06 2.47 3.80 -2.39 -0.01 2.46 16 27 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.07 3.81 5.92 -2.39 -0.01 3.80 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.40 13.85 7.58 -92.71 -0.70 13.15 16 33 H 0.07 1.52 7.20 -2.39 -0.02 1.50 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.69 4.34 -2.39 -0.01 1.68 16 36 H 0.05 1.33 7.37 -2.39 -0.02 1.32 16 37 H 0.10 1.72 7.66 -2.39 -0.02 1.70 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.14 3.05 5.90 -2.91 -0.02 3.03 16 40 H 0.14 2.42 8.06 -2.92 -0.02 2.40 16 41 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 43 H 0.09 2.04 7.42 -2.39 -0.02 2.02 16 44 H 0.06 1.68 8.12 -2.39 -0.02 1.66 16 45 H 0.07 2.19 1.68 -2.39 0.00 2.19 16 Total: -1.00 -67.34 340.48 4.55 -62.78 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.29 Total: 33.73 kcal Atomic # 6 Polarization: -34.14 SS G_CDS: 4.15 Total: -29.99 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -1.88 Total: -83.05 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.04 Total: -27.63 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -67.34 4.55 -62.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183865166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.860 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds