Wall clock time and date at job start Tue Mar 31 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47391 * 2 1 4 4 H 1.09000 * 109.47196 * 54.99626 * 3 2 1 5 5 C 1.50696 * 109.47280 * 174.99913 * 3 2 1 6 6 H 1.08004 * 119.99772 * 120.00406 * 5 3 2 7 7 C 1.37874 * 120.00035 * 299.99860 * 5 3 2 8 8 N 1.31512 * 119.99837 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00153 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47200 * 59.99737 * 9 7 5 11 11 H 1.48496 * 109.47130 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46774 * 300.00041 * 9 7 5 13 13 N 1.46506 * 109.47171 * 295.00022 * 3 2 1 14 14 C 1.34773 * 119.99968 * 84.99494 * 13 3 2 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 3 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47348 * 179.72561 * 16 14 13 18 18 C 1.52993 * 109.47254 * 300.00277 * 17 16 14 19 19 C 1.53008 * 109.47007 * 59.99952 * 17 16 14 20 20 C 1.50696 * 109.46969 * 179.97438 * 17 16 14 21 21 C 1.38230 * 120.00138 * 359.73334 * 20 17 16 22 22 C 1.38238 * 119.99879 * 179.76177 * 21 20 17 23 23 C 1.38230 * 120.00082 * 0.50734 * 22 21 20 24 24 C 1.38234 * 119.99880 * 359.74157 * 23 22 21 25 25 C 1.38234 * 120.00224 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47115 * 60.00159 * 1 2 3 27 27 H 1.08996 * 109.46808 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47123 * 300.00164 * 1 2 3 29 29 H 1.09000 * 109.46809 * 239.99514 * 2 1 3 30 30 H 1.09007 * 109.46859 * 120.00329 * 2 1 3 31 31 H 0.97002 * 119.99944 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99507 * 265.00350 * 13 3 2 33 33 H 1.09001 * 109.46564 * 299.73030 * 16 14 13 34 34 H 1.08998 * 109.47012 * 59.72084 * 16 14 13 35 35 H 1.09002 * 109.47712 * 59.99463 * 18 17 16 36 36 H 1.08995 * 109.47426 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.47145 * 299.99770 * 18 17 16 38 38 H 1.09004 * 109.46786 * 59.99901 * 19 17 16 39 39 H 1.08995 * 109.46766 * 180.02562 * 19 17 16 40 40 H 1.09002 * 109.47164 * 300.00057 * 19 17 16 41 41 H 1.08005 * 120.00073 * 359.97438 * 21 20 17 42 42 H 1.08005 * 119.99923 * 180.22751 * 22 21 20 43 43 H 1.08001 * 120.00355 * 179.72638 * 23 22 21 44 44 H 1.07999 * 120.00023 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00480 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8811 1.3819 10 1 6.4995 2.2813 1.3822 11 1 6.3977 0.2177 2.6510 12 1 6.5975 0.1471 0.2350 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6643 -1.3670 15 8 -0.3412 2.6279 -0.4360 16 6 0.0364 3.3376 -2.6549 17 6 -1.3852 3.8880 -2.5238 18 6 -2.3515 2.7393 -2.2282 19 6 -1.4353 4.9036 -1.3805 20 6 -1.7837 4.5618 -3.8114 21 6 -0.8967 4.6082 -4.8706 22 6 -1.2642 5.2219 -6.0535 23 6 -2.5147 5.7985 -6.1735 24 6 -3.3998 5.7567 -5.1126 25 6 -3.0342 5.1387 -3.9313 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8292 -0.0610 2.9500 32 1 2.2721 2.1230 -1.9978 33 1 0.7249 4.1560 -2.8654 34 1 0.0722 2.6141 -3.4694 35 1 -2.0631 2.2523 -1.2967 36 1 -3.3643 3.1313 -2.1352 37 1 -2.3158 2.0158 -3.0426 38 1 -0.7468 5.7220 -1.5910 39 1 -2.4481 5.2954 -1.2867 40 1 -1.1468 4.4166 -0.4489 41 1 0.0821 4.1618 -4.7752 42 1 -0.5725 5.2549 -6.8823 43 1 -2.8002 6.2820 -7.0962 44 1 -4.3767 6.2076 -5.2062 45 1 -3.7255 5.1064 -3.1023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183937665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:05 Heat of formation + Delta-G solvation = -43.995078 kcal Electronic energy + Delta-G solvation = -23519.828685 eV Core-core repulsion = 20307.909528 eV Total energy + Delta-G solvation = -3211.919157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39145 -40.01315 -37.43822 -36.13616 -34.25206 -32.87232 -31.88198 -30.70298 -29.58126 -28.21137 -28.07208 -25.01422 -23.94549 -23.21213 -22.02506 -21.01514 -20.15133 -18.71140 -18.05827 -17.11904 -16.95346 -16.43141 -16.10814 -15.78180 -15.65550 -15.17048 -15.01971 -14.61408 -14.47603 -14.16564 -14.09505 -13.71489 -13.41232 -13.30991 -13.11911 -12.98713 -12.78123 -12.71467 -12.63459 -12.25613 -12.24224 -12.12422 -11.95890 -11.82276 -11.60031 -11.48922 -11.37187 -11.01453 -10.52206 -10.15281 -9.72963 -9.53400 -9.45098 -8.14011 -6.30932 0.54761 0.58719 1.45036 1.46439 1.54105 1.99867 2.38446 2.74916 2.97073 3.15268 3.68372 3.84065 4.10663 4.19561 4.23991 4.27108 4.38083 4.44941 4.53854 4.62324 4.65358 4.72153 4.77102 4.77745 4.81616 4.88096 5.07716 5.10444 5.13308 5.14964 5.23728 5.26070 5.32019 5.46458 5.49547 5.54744 5.60451 5.68367 5.70909 5.79732 5.82797 5.85572 6.01075 6.20945 6.23028 6.78661 7.12324 7.37204 7.73831 8.90729 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028028 B = 0.003567 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.770371 B = 7847.751046 C = 8360.065917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.711 5.711 14 C 0.498 3.502 15 O -0.567 6.567 16 C -0.126 4.126 17 C 0.002 3.998 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.075 4.075 21 C -0.136 4.136 22 C -0.124 4.124 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.128 4.128 26 H 0.050 0.950 27 H 0.040 0.960 28 H 0.026 0.974 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 8.745 -16.768 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.360 5.360 14 C 0.286 3.714 15 O -0.448 6.448 16 C -0.166 4.166 17 C 0.002 3.998 18 C -0.201 4.201 19 C -0.201 4.201 20 C -0.075 4.075 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.146 4.146 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.117 8.618 -15.919 20.737 hybrid contribution 1.188 -0.200 0.408 1.272 sum -8.928 8.419 -15.511 19.778 Atomic orbital electron populations 1.21674 0.96775 0.98903 1.00539 1.21772 0.93927 0.99334 1.00926 1.18270 0.93232 0.89042 0.81706 0.98367 1.21597 0.91836 1.38739 1.06538 0.91236 1.25743 1.03088 0.94503 0.95123 1.70043 1.37003 1.38439 1.09838 0.85481 0.79463 0.78402 0.77492 1.19717 1.21311 1.18983 1.46317 1.15955 1.56377 1.17342 1.21069 0.81513 0.78463 0.90383 1.90547 1.51329 1.60405 1.42527 1.21871 0.98026 1.01620 0.95073 1.19066 0.93414 0.94995 0.92363 1.22035 0.98379 0.97377 1.02313 1.22030 1.01480 0.97788 0.98801 1.19885 0.94773 0.98087 0.94738 1.21427 1.00216 1.00496 0.93245 1.21446 0.97185 0.97728 0.97830 1.21452 0.94154 1.00113 0.99520 1.21394 1.00509 0.99300 0.93126 1.21130 0.96168 0.98755 0.98498 0.93150 0.94130 0.95493 0.94427 0.91391 0.92714 0.76514 0.87572 0.87300 0.91603 0.92405 0.93143 0.93339 0.92321 0.91904 0.84685 0.84210 0.84169 0.84425 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.51 71.98 0.61 -4.76 16 2 C -0.12 -5.88 5.45 30.59 0.17 -5.72 16 3 C 0.28 14.13 2.24 44.24 0.10 14.23 16 4 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 5 C -0.55 -28.81 8.73 25.60 0.22 -28.59 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.91 -52.33 11.29 21.45 0.24 -52.09 16 9 Si 0.97 42.00 29.54 68.60 2.03 44.03 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.71 -28.11 5.02 -446.10 -2.24 -30.35 16 14 C 0.50 18.15 5.82 87.66 0.51 18.66 16 15 O -0.57 -24.33 8.46 -3.04 -0.03 -24.35 16 16 C -0.13 -3.29 3.43 29.85 0.10 -3.19 16 17 C 0.00 0.05 0.60 -52.93 -0.03 0.02 16 18 C -0.14 -4.00 7.99 71.98 0.58 -3.42 16 19 C -0.14 -4.10 7.99 71.98 0.57 -3.52 16 20 C -0.07 -1.68 4.76 -19.87 -0.09 -1.78 16 21 C -0.14 -2.70 8.98 22.27 0.20 -2.50 16 22 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 23 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 25 C -0.13 -2.66 8.71 22.27 0.19 -2.46 16 26 H 0.05 2.10 5.64 -2.39 -0.01 2.09 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.03 1.28 7.84 -2.39 -0.02 1.26 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 3.75 5.95 -2.38 -0.01 3.73 16 31 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.40 13.48 8.54 -92.71 -0.79 12.69 16 33 H 0.11 2.41 7.50 -2.39 -0.02 2.39 16 34 H 0.11 2.40 7.53 -2.39 -0.02 2.38 16 35 H 0.07 2.26 5.51 -2.39 -0.01 2.24 16 36 H 0.06 1.44 7.39 -2.39 -0.02 1.43 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.06 1.49 7.39 -2.39 -0.02 1.48 16 40 H 0.06 2.22 5.51 -2.39 -0.01 2.21 16 41 H 0.14 2.32 5.90 -2.91 -0.02 2.31 16 42 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 45 H 0.12 2.40 7.10 -2.91 -0.02 2.38 16 Total: -1.00 -63.29 346.44 4.44 -58.85 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.19 Total: 31.45 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 4.25 Total: -27.53 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -2.00 Total: -82.44 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.03 Total: -24.35 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -63.29 4.44 -58.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.850 kcal (2) G-P(sol) polarization free energy of solvation -63.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds