Wall clock time and date at job start Tue Mar 31 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21283 * 119.99304 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00578 * 180.02562 * 14 13 3 17 17 C 1.53000 * 109.47449 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47058 * 300.00283 * 17 16 14 19 19 C 1.53000 * 109.46787 * 59.99988 * 17 16 14 20 20 C 1.50700 * 109.47147 * 179.97438 * 17 16 14 21 21 C 1.38233 * 119.99957 * 359.73248 * 20 17 16 22 22 C 1.38240 * 119.99331 * 179.76425 * 21 20 17 23 23 C 1.38228 * 120.00318 * 0.50669 * 22 21 20 24 24 C 1.38233 * 120.00305 * 359.74261 * 23 22 21 25 25 C 1.38236 * 119.99806 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 33 33 H 1.08995 * 109.47428 * 300.00429 * 16 14 13 34 34 H 1.09008 * 109.47339 * 60.00017 * 16 14 13 35 35 H 1.08993 * 109.47168 * 59.99984 * 18 17 16 36 36 H 1.09006 * 109.46561 * 179.97438 * 18 17 16 37 37 H 1.08995 * 109.47324 * 299.99443 * 18 17 16 38 38 H 1.09002 * 109.46985 * 60.00135 * 19 17 16 39 39 H 1.09006 * 109.47354 * 179.97438 * 19 17 16 40 40 H 1.09000 * 109.47233 * 300.00278 * 19 17 16 41 41 H 1.07999 * 120.00179 * 359.97438 * 21 20 17 42 42 H 1.08003 * 119.99215 * 180.22481 * 22 21 20 43 43 H 1.08005 * 119.99900 * 179.72654 * 23 22 21 44 44 H 1.08000 * 120.00364 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.00174 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4343 16 6 0.0366 3.3387 2.6543 17 6 -1.3822 3.8955 2.5206 18 6 -1.4256 4.9119 1.3778 19 6 -2.3531 2.7511 2.2224 20 6 -1.7810 4.5692 3.8083 21 6 -0.9004 4.6005 4.8734 22 6 -1.2644 5.2228 6.0529 23 6 -2.5128 5.8045 6.1708 24 6 -3.3953 5.7687 5.1075 25 6 -3.0296 5.1506 3.9263 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0604 -2.9502 32 1 2.2719 2.1232 1.9977 33 1 0.0680 2.6148 3.4685 34 1 0.7280 4.1543 2.8665 35 1 -1.1375 4.4242 0.4466 36 1 -2.4366 5.3081 1.2823 37 1 -0.7341 5.7271 1.5902 38 1 -2.3221 2.0270 3.0365 39 1 -3.3640 3.1476 2.1276 40 1 -2.0648 2.2634 1.2912 41 1 0.0732 4.1418 4.7829 42 1 -0.5750 5.2504 6.8838 43 1 -2.7988 6.2869 7.0939 44 1 -4.3708 6.2229 5.1997 45 1 -3.7192 5.1222 3.0956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183937685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:08 Heat of formation + Delta-G solvation = -44.096019 kcal Electronic energy + Delta-G solvation = -23519.172629 eV Core-core repulsion = 20307.249094 eV Total energy + Delta-G solvation = -3211.923534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39113 -40.01267 -37.43892 -36.13637 -34.25203 -32.87171 -31.88199 -30.70279 -29.58280 -28.21106 -28.07264 -25.01536 -23.94537 -23.21186 -22.02532 -21.01544 -20.15124 -18.71292 -18.05910 -17.12029 -16.95580 -16.42904 -16.10516 -15.78230 -15.65495 -15.17064 -15.01815 -14.61768 -14.47863 -14.16576 -14.09710 -13.71753 -13.41257 -13.30996 -13.12411 -12.98299 -12.77121 -12.73797 -12.63307 -12.24719 -12.24165 -12.11708 -11.95876 -11.82363 -11.60184 -11.49581 -11.37177 -11.00249 -10.52905 -10.15413 -9.72952 -9.53363 -9.45076 -8.14243 -6.30949 0.54767 0.58718 1.44599 1.45305 1.55388 1.99825 2.38366 2.74881 2.97075 3.15161 3.68359 3.84052 4.10658 4.19573 4.23978 4.27113 4.38077 4.44943 4.53800 4.62098 4.65329 4.72154 4.77112 4.77703 4.81564 4.88052 5.07727 5.10444 5.13303 5.14945 5.23709 5.26071 5.31929 5.46426 5.49504 5.54734 5.60542 5.68407 5.70917 5.79762 5.82777 5.85580 6.01002 6.20951 6.23062 6.78867 7.12251 7.37179 7.73832 8.90697 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028015 B = 0.003567 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.240903 B = 7848.512267 C = 8358.558240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.281 3.719 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.711 5.711 14 C 0.498 3.502 15 O -0.567 6.567 16 C -0.126 4.126 17 C 0.002 3.998 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.075 4.075 21 C -0.136 4.136 22 C -0.124 4.124 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.128 4.128 26 H 0.040 0.960 27 H 0.026 0.974 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 8.759 16.772 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.360 5.360 14 C 0.286 3.714 15 O -0.448 6.448 16 C -0.166 4.166 17 C 0.002 3.998 18 C -0.201 4.201 19 C -0.201 4.201 20 C -0.075 4.075 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.146 4.146 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.130 8.640 15.924 20.757 hybrid contribution 1.187 -0.220 -0.411 1.276 sum -8.942 8.420 15.513 19.787 Atomic orbital electron populations 1.21674 0.96778 0.98913 1.00528 1.21772 0.93928 0.99339 1.00930 1.18276 0.93250 0.89040 0.81719 0.98344 1.21622 0.91818 1.38634 1.06499 0.91249 1.25746 1.03079 0.94535 0.95134 1.70052 1.36910 1.38506 1.09850 0.85423 0.79489 0.78812 0.77079 1.19781 1.21373 1.18947 1.46315 1.15925 1.56410 1.17341 1.21067 0.81506 0.78446 0.90399 1.90546 1.51441 1.60415 1.42414 1.21869 0.98056 1.01582 0.95085 1.19067 0.93425 0.94982 0.92368 1.22024 1.01483 0.97786 0.98797 1.22040 0.98347 0.97414 1.02310 1.19887 0.94809 0.98094 0.94690 1.21427 1.00282 1.00454 0.93218 1.21446 0.97191 0.97664 0.97890 1.21452 0.94157 1.00141 0.99490 1.21394 1.00518 0.99300 0.93116 1.21133 0.96142 0.98761 0.98517 0.94119 0.95482 0.93171 0.94424 0.91390 0.92730 0.76516 0.87290 0.87581 0.91905 0.92320 0.93339 0.93140 0.92405 0.91604 0.84684 0.84211 0.84169 0.84423 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.51 71.98 0.61 -4.76 16 2 C -0.12 -5.89 5.45 30.60 0.17 -5.72 16 3 C 0.28 14.11 2.24 44.25 0.10 14.20 16 4 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 5 C -0.55 -28.73 8.73 25.60 0.22 -28.50 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.81 5.29 84.66 0.45 1.25 16 8 N -0.91 -52.29 11.29 21.45 0.24 -52.05 16 9 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 13 N -0.71 -28.10 5.02 -446.11 -2.24 -30.34 16 14 C 0.50 18.15 5.81 87.66 0.51 18.66 16 15 O -0.57 -24.33 8.48 -3.04 -0.03 -24.36 16 16 C -0.13 -3.29 3.43 29.85 0.10 -3.19 16 17 C 0.00 0.05 0.60 -52.93 -0.03 0.02 16 18 C -0.14 -4.09 7.99 71.98 0.58 -3.52 16 19 C -0.14 -4.00 7.99 71.98 0.57 -3.42 16 20 C -0.07 -1.68 4.76 -19.86 -0.09 -1.78 16 21 C -0.14 -2.70 8.98 22.27 0.20 -2.50 16 22 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 23 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 25 C -0.13 -2.66 8.71 22.27 0.19 -2.46 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.03 1.28 7.85 -2.39 -0.02 1.26 16 28 H 0.05 2.09 5.64 -2.38 -0.01 2.08 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 3.75 5.95 -2.39 -0.01 3.73 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.40 13.48 8.54 -92.71 -0.79 12.69 16 33 H 0.11 2.40 7.50 -2.39 -0.02 2.38 16 34 H 0.11 2.41 7.53 -2.38 -0.02 2.39 16 35 H 0.06 2.22 5.51 -2.39 -0.01 2.21 16 36 H 0.06 1.49 7.39 -2.38 -0.02 1.48 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.44 7.39 -2.38 -0.02 1.43 16 40 H 0.07 2.26 5.51 -2.39 -0.01 2.24 16 41 H 0.14 2.32 5.90 -2.91 -0.02 2.31 16 42 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 45 H 0.12 2.40 7.10 -2.91 -0.02 2.37 16 Total: -1.00 -63.30 346.46 4.44 -58.86 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.19 Total: 31.33 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.25 Total: -27.50 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -2.00 Total: -82.39 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.03 Total: -24.36 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -63.30 4.44 -58.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.761 kcal (2) G-P(sol) polarization free energy of solvation -63.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds