Wall clock time and date at job start Tue Mar 31 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 H 1.09001 * 109.47066 * 55.00046 * 3 2 1 5 5 C 1.50695 * 109.47279 * 174.99887 * 3 2 1 6 6 H 1.07999 * 120.00376 * 119.99739 * 5 3 2 7 7 C 1.37876 * 120.00418 * 300.00150 * 5 3 2 8 8 N 1.31510 * 120.00619 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99711 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47146 * 90.00067 * 9 7 5 11 11 H 1.48496 * 109.47401 * 210.00168 * 9 7 5 12 12 H 1.48497 * 109.47059 * 330.00553 * 9 7 5 13 13 N 1.46496 * 109.47084 * 295.00009 * 3 2 1 14 14 C 1.34777 * 120.00271 * 84.99619 * 13 3 2 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 3 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.47069 * 304.99691 * 17 16 14 19 19 C 1.52993 * 109.47345 * 65.00249 * 17 16 14 20 20 C 1.52998 * 109.47227 * 184.99985 * 19 17 16 21 21 C 1.50703 * 109.46801 * 184.99967 * 17 16 14 22 22 C 1.38229 * 120.00230 * 299.72598 * 21 17 16 23 23 C 1.38235 * 120.00225 * 179.80820 * 22 21 17 24 24 C 1.38234 * 119.99849 * 0.40295 * 23 22 21 25 25 C 1.38242 * 119.99927 * 359.84650 * 24 23 22 26 26 C 1.38228 * 120.00008 * 359.96542 * 25 24 23 27 27 H 1.08998 * 109.46755 * 59.99787 * 1 2 3 28 28 H 1.08995 * 109.47658 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46863 * 300.00595 * 1 2 3 30 30 H 1.09001 * 109.46863 * 239.99405 * 2 1 3 31 31 H 1.09010 * 109.46933 * 119.99789 * 2 1 3 32 32 H 0.97003 * 120.00190 * 180.02562 * 8 7 5 33 33 H 0.97005 * 120.00266 * 265.00202 * 13 3 2 34 34 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 35 35 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 36 36 H 1.09002 * 109.46975 * 304.99831 * 19 17 16 37 37 H 1.08997 * 109.47674 * 64.99770 * 19 17 16 38 38 H 1.09002 * 109.47017 * 299.99820 * 20 19 17 39 39 H 1.09004 * 109.47339 * 59.99924 * 20 19 17 40 40 H 1.09001 * 109.47528 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.99926 * 0.02562 * 22 21 17 42 42 H 1.07996 * 120.00300 * 180.22604 * 23 22 21 43 43 H 1.07997 * 120.00461 * 179.83118 * 24 23 22 44 44 H 1.08002 * 119.99934 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.00031 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1434 0.8783 1.2279 8 7 5.4540 0.8802 1.3363 9 14 3.0964 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7941 0.2358 3.8755 12 1 1.7882 0.8092 2.6394 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6643 -1.3670 15 8 -0.3391 2.6326 -0.4342 16 6 0.0364 3.3376 -2.6549 17 6 -1.3823 3.8945 -2.5211 18 1 -2.0596 3.0951 -2.2208 19 6 -1.3984 5.0007 -1.4643 20 6 -2.8369 5.4716 -1.2409 21 6 -1.8274 4.4588 -3.8458 22 6 -1.1208 5.4942 -4.4285 23 6 -1.5267 6.0091 -5.6454 24 6 -2.6441 5.4942 -6.2756 25 6 -3.3538 4.4623 -5.6904 26 6 -2.9456 3.9448 -4.4754 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 5.8771 0.4817 2.1129 33 1 2.2721 2.1230 -1.9978 34 1 0.0674 2.6129 -3.4685 35 1 0.7279 4.1528 -2.8680 36 1 -0.9928 4.6154 -0.5289 37 1 -0.7908 5.8386 -1.8060 38 1 -3.2425 5.8569 -2.1763 39 1 -3.4446 4.6337 -0.8991 40 1 -2.8485 6.2594 -0.4876 41 1 -0.2495 5.8984 -3.9347 42 1 -0.9726 6.8155 -6.1025 43 1 -2.9629 5.8983 -7.2251 44 1 -4.2271 4.0603 -6.1826 45 1 -3.5003 3.1388 -4.0179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183939919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:05 Heat of formation + Delta-G solvation = -33.172164 kcal Electronic energy + Delta-G solvation = -23279.325107 eV Core-core repulsion = 20067.875266 eV Total energy + Delta-G solvation = -3211.449841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01447 -38.96184 -36.03477 -34.84449 -32.40575 -31.66281 -31.01153 -30.78750 -29.53942 -27.44838 -24.64166 -22.98323 -22.60750 -22.32560 -20.92579 -19.76366 -19.43924 -17.42394 -16.84952 -15.95637 -15.68486 -15.36054 -15.07342 -14.76367 -14.38696 -14.31153 -13.73866 -13.49019 -13.29885 -13.03135 -12.99898 -12.67648 -12.56411 -12.19568 -11.91132 -11.83347 -11.59178 -11.36935 -11.19617 -11.01721 -10.91503 -10.87109 -10.60985 -10.47420 -10.45873 -9.91315 -9.53165 -9.22347 -9.02233 -9.00667 -8.75024 -8.71458 -8.01345 -6.20925 -4.23207 1.27553 1.30725 3.23112 3.29899 3.35423 3.40434 3.68215 4.01541 4.31675 4.69296 4.74769 4.89762 4.97875 5.05460 5.12696 5.14607 5.32770 5.42044 5.44311 5.48336 5.60329 5.64321 5.85207 5.89582 5.91481 5.97907 6.03254 6.03545 6.08183 6.19725 6.20845 6.34235 6.38016 6.41513 6.58395 6.65683 6.69098 6.71210 6.86540 6.92245 6.97046 7.29078 7.34020 7.54236 8.17505 8.56423 8.77057 9.00024 9.40465 10.91204 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027473 B = 0.003584 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.942238 B = 7810.994959 C = 8026.698233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.703 5.703 14 C 0.503 3.497 15 O -0.548 6.548 16 C -0.136 4.136 17 C -0.031 4.031 18 H 0.085 0.915 19 C -0.122 4.122 20 C -0.146 4.146 21 C -0.065 4.065 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.117 4.117 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.267 0.733 33 H 0.394 0.606 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.281 7.636 -12.964 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.350 5.350 14 C 0.288 3.712 15 O -0.427 6.427 16 C -0.176 4.176 17 C -0.050 4.050 18 H 0.104 0.896 19 C -0.159 4.159 20 C -0.203 4.203 21 C -0.065 4.065 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.149 4.149 25 C -0.138 4.138 26 C -0.135 4.135 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.648 7.555 -12.162 21.210 hybrid contribution 0.003 -0.533 0.248 0.588 sum -15.645 7.023 -11.914 20.881 Atomic orbital electron populations 1.21867 0.96935 0.98926 1.02274 1.22283 0.94365 1.00058 1.00995 1.19115 0.95491 0.88448 0.83057 0.93361 1.21072 0.88743 1.39689 1.07773 0.90266 1.24842 0.94858 0.95173 0.97693 1.69869 1.08706 1.44566 1.29847 0.86896 0.80961 0.79932 0.80878 1.20291 1.22219 1.18461 1.46201 1.15032 1.55959 1.17848 1.20409 0.82404 0.79026 0.89325 1.90629 1.51432 1.59835 1.40823 1.21752 0.97569 1.01250 0.97046 1.19957 0.95638 0.98208 0.91181 0.89634 1.21720 0.97187 0.96792 1.00184 1.21713 0.97022 1.00777 1.00781 1.19961 0.94938 0.95632 0.95957 1.21049 1.00049 0.96654 0.95548 1.21131 0.97024 1.00021 0.95572 1.21101 0.96193 0.97538 1.00037 1.21117 0.99849 0.97069 0.95798 1.21109 0.96784 1.00196 0.95458 0.92868 0.95122 0.92888 0.92407 0.92892 0.92313 0.77296 0.89384 0.89261 0.89080 0.92700 0.93310 0.92847 0.93200 0.86039 0.86307 0.86495 0.86375 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.52 37.16 0.32 -2.52 16 2 C -0.14 -3.05 5.11 -26.73 -0.14 -3.19 16 3 C 0.24 5.65 1.83 -69.09 -0.13 5.52 16 4 H 0.05 1.25 6.63 -51.93 -0.34 0.90 16 5 C -0.53 -14.33 9.31 -34.44 -0.32 -14.65 16 6 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 9 Si 0.88 21.75 24.41 -169.99 -4.15 17.60 16 10 H -0.28 -6.60 6.83 56.52 0.39 -6.21 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 12 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 13 N -0.70 -13.40 5.02 -54.94 -0.28 -13.68 16 14 C 0.50 8.76 6.08 -10.98 -0.07 8.70 16 15 O -0.55 -11.04 11.13 5.56 0.06 -10.98 16 16 C -0.14 -1.76 4.92 -27.88 -0.14 -1.90 16 17 C -0.03 -0.39 1.69 -91.77 -0.15 -0.54 16 18 H 0.09 1.16 7.69 -51.93 -0.40 0.76 16 19 C -0.12 -1.58 5.08 -26.74 -0.14 -1.72 16 20 C -0.15 -1.72 9.73 37.16 0.36 -1.35 16 21 C -0.06 -0.72 3.76 -104.62 -0.39 -1.11 16 22 C -0.12 -1.20 8.71 -39.59 -0.34 -1.54 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.12 -1.23 9.67 -39.58 -0.38 -1.61 16 27 H 0.05 1.02 5.65 -51.93 -0.29 0.73 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.11 7.85 -51.93 -0.41 0.71 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.24 3.22 -51.92 -0.17 1.07 16 32 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.39 6.70 8.54 -40.82 -0.35 6.35 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 36 H 0.09 1.45 5.88 -51.93 -0.31 1.15 16 37 H 0.05 0.66 7.21 -51.93 -0.37 0.29 16 38 H 0.05 0.55 7.38 -51.93 -0.38 0.16 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.12 1.17 7.13 -52.49 -0.37 0.80 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 1.15 7.95 -52.48 -0.42 0.73 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -30.25 348.84 -8.34 -38.59 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.19 Total: 7.34 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -2.81 Total: -18.48 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.50 Total: -39.33 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.06 Total: -10.98 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.15 Total: 17.60 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.25 -8.34 -38.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.416 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds