Wall clock time and date at job start Tue Mar 31 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 H 1.09001 * 109.47066 * 55.00046 * 3 2 1 5 5 C 1.50695 * 109.47279 * 174.99887 * 3 2 1 6 6 H 1.07999 * 120.00376 * 119.99739 * 5 3 2 7 7 C 1.37876 * 120.00418 * 300.00150 * 5 3 2 8 8 N 1.31510 * 120.00619 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99711 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47146 * 90.00067 * 9 7 5 11 11 H 1.48496 * 109.47401 * 210.00168 * 9 7 5 12 12 H 1.48497 * 109.47059 * 330.00553 * 9 7 5 13 13 N 1.46496 * 109.47084 * 295.00009 * 3 2 1 14 14 C 1.34777 * 120.00271 * 84.99619 * 13 3 2 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 13 3 17 17 C 1.53000 * 109.46912 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.47069 * 304.99691 * 17 16 14 19 19 C 1.52993 * 109.47345 * 65.00249 * 17 16 14 20 20 C 1.52998 * 109.47227 * 184.99985 * 19 17 16 21 21 C 1.50703 * 109.46801 * 184.99967 * 17 16 14 22 22 C 1.38229 * 120.00230 * 299.72598 * 21 17 16 23 23 C 1.38235 * 120.00225 * 179.80820 * 22 21 17 24 24 C 1.38234 * 119.99849 * 0.40295 * 23 22 21 25 25 C 1.38242 * 119.99927 * 359.84650 * 24 23 22 26 26 C 1.38228 * 120.00008 * 359.96542 * 25 24 23 27 27 H 1.08998 * 109.46755 * 59.99787 * 1 2 3 28 28 H 1.08995 * 109.47658 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46863 * 300.00595 * 1 2 3 30 30 H 1.09001 * 109.46863 * 239.99405 * 2 1 3 31 31 H 1.09010 * 109.46933 * 119.99789 * 2 1 3 32 32 H 0.97003 * 120.00190 * 180.02562 * 8 7 5 33 33 H 0.97005 * 120.00266 * 265.00202 * 13 3 2 34 34 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 35 35 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 36 36 H 1.09002 * 109.46975 * 304.99831 * 19 17 16 37 37 H 1.08997 * 109.47674 * 64.99770 * 19 17 16 38 38 H 1.09002 * 109.47017 * 299.99820 * 20 19 17 39 39 H 1.09004 * 109.47339 * 59.99924 * 20 19 17 40 40 H 1.09001 * 109.47528 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.99926 * 0.02562 * 22 21 17 42 42 H 1.07996 * 120.00300 * 180.22604 * 23 22 21 43 43 H 1.07997 * 120.00461 * 179.83118 * 24 23 22 44 44 H 1.08002 * 119.99934 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.00031 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1434 0.8783 1.2279 8 7 5.4540 0.8802 1.3363 9 14 3.0964 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7941 0.2358 3.8755 12 1 1.7882 0.8092 2.6394 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6643 -1.3670 15 8 -0.3391 2.6326 -0.4342 16 6 0.0364 3.3376 -2.6549 17 6 -1.3823 3.8945 -2.5211 18 1 -2.0596 3.0951 -2.2208 19 6 -1.3984 5.0007 -1.4643 20 6 -2.8369 5.4716 -1.2409 21 6 -1.8274 4.4588 -3.8458 22 6 -1.1208 5.4942 -4.4285 23 6 -1.5267 6.0091 -5.6454 24 6 -2.6441 5.4942 -6.2756 25 6 -3.3538 4.4623 -5.6904 26 6 -2.9456 3.9448 -4.4754 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 5.8771 0.4817 2.1129 33 1 2.2721 2.1230 -1.9978 34 1 0.0674 2.6129 -3.4685 35 1 0.7279 4.1528 -2.8680 36 1 -0.9928 4.6154 -0.5289 37 1 -0.7908 5.8386 -1.8060 38 1 -3.2425 5.8569 -2.1763 39 1 -3.4446 4.6337 -0.8991 40 1 -2.8485 6.2594 -0.4876 41 1 -0.2495 5.8984 -3.9347 42 1 -0.9726 6.8155 -6.1025 43 1 -2.9629 5.8983 -7.2251 44 1 -4.2271 4.0603 -6.1826 45 1 -3.5003 3.1388 -4.0179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183939919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:05 Heat of formation + Delta-G solvation = -50.376042 kcal Electronic energy + Delta-G solvation = -23280.071123 eV Core-core repulsion = 20067.875266 eV Total energy + Delta-G solvation = -3212.195857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16106 -40.07661 -37.42735 -36.17177 -34.37491 -33.31933 -31.76346 -31.70400 -30.60682 -29.25695 -25.79889 -24.43494 -23.78606 -23.13284 -22.44647 -21.20577 -20.63396 -19.06245 -17.97667 -17.54318 -17.14381 -16.60219 -16.24385 -15.92173 -15.67456 -15.26249 -15.16409 -14.91626 -14.44554 -14.30506 -14.13595 -13.99330 -13.75269 -13.56886 -13.33767 -13.28126 -12.94151 -12.77136 -12.68304 -12.38992 -12.20061 -11.95091 -11.87009 -11.80923 -11.52182 -11.42433 -11.32042 -11.21387 -10.85841 -10.46363 -9.73371 -9.66404 -9.51430 -8.38105 -6.43090 0.53109 0.58598 1.26287 1.34451 1.44255 1.89390 2.25706 2.56124 2.97455 2.98231 3.74512 3.80088 4.10287 4.20440 4.22146 4.24804 4.27315 4.34369 4.37337 4.39154 4.50399 4.57581 4.61883 4.71539 4.74706 4.82848 4.91001 4.99757 5.02256 5.08143 5.14965 5.16975 5.23709 5.25874 5.27026 5.41041 5.43229 5.48690 5.54635 5.68185 5.71061 5.74777 5.85137 6.16729 6.20758 6.59685 6.97733 7.21014 7.57365 8.77193 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027473 B = 0.003584 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.942238 B = 7810.994959 C = 8026.698233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.022 0.978 5 C -0.532 4.532 6 H 0.055 0.945 7 C 0.028 3.972 8 N -0.935 5.935 9 Si 0.937 3.063 10 H -0.261 1.261 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.705 5.705 14 C 0.502 3.498 15 O -0.574 6.574 16 C -0.125 4.125 17 C -0.023 4.023 18 H 0.071 0.929 19 C -0.120 4.120 20 C -0.139 4.139 21 C -0.074 4.074 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.125 4.125 26 C -0.129 4.129 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.269 0.731 33 H 0.404 0.596 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.085 7.843 -14.757 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.176 4.176 3 C 0.145 3.855 4 H 0.039 0.961 5 C -0.571 4.571 6 H 0.073 0.927 7 C -0.171 4.171 8 N -0.574 5.574 9 Si 0.764 3.236 10 H -0.187 1.187 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.455 6.455 16 C -0.164 4.164 17 C -0.042 4.042 18 H 0.090 0.910 19 C -0.157 4.157 20 C -0.197 4.197 21 C -0.074 4.074 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.150 4.150 25 C -0.143 4.143 26 C -0.147 4.147 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.239 0.761 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.144 0.856 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.467 7.768 -13.986 23.686 hybrid contribution 0.554 -0.504 0.720 1.039 sum -16.913 7.263 -13.266 22.689 Atomic orbital electron populations 1.21747 0.95097 1.00400 1.01690 1.22203 0.95932 0.98631 1.00806 1.18723 0.92925 0.89579 0.84230 0.96066 1.21335 0.90599 1.38324 1.06807 0.92657 1.25554 0.95710 0.95958 0.99884 1.69978 1.10284 1.46270 1.30879 0.86028 0.79308 0.79896 0.78327 1.18677 1.22171 1.18489 1.46073 1.16162 1.56423 1.16799 1.21150 0.81230 0.78121 0.90522 1.90627 1.52044 1.60523 1.42275 1.21743 0.98274 1.01784 0.94643 1.19818 0.94855 0.97519 0.92002 0.91034 1.21657 0.97927 0.97267 0.98896 1.21649 0.96118 1.00633 1.01277 1.19792 0.95792 0.96484 0.95357 1.21178 1.00314 0.96644 0.96155 1.21410 0.97287 1.00357 0.95206 1.21442 0.95747 0.97076 1.00781 1.21393 1.00457 0.97023 0.95393 1.21256 0.96795 1.00579 0.96104 0.92439 0.92556 0.94491 0.91504 0.94085 0.92138 0.76091 0.87425 0.87508 0.92318 0.91802 0.92485 0.93468 0.92782 0.85616 0.84456 0.84266 0.84458 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 8.52 71.98 0.61 -4.43 16 2 C -0.14 -5.89 5.11 30.59 0.16 -5.74 16 3 C 0.25 11.69 1.83 44.24 0.08 11.77 16 4 H 0.02 1.12 6.63 -2.39 -0.02 1.11 16 5 C -0.53 -29.00 9.31 25.60 0.24 -28.77 16 6 H 0.06 3.21 7.98 -2.91 -0.02 3.18 16 7 C 0.03 1.61 5.45 84.66 0.46 2.07 16 8 N -0.93 -56.36 13.96 21.45 0.30 -56.06 16 9 Si 0.94 45.13 24.41 68.60 1.67 46.81 16 10 H -0.26 -11.86 6.83 99.48 0.68 -11.18 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 12 H -0.26 -12.44 6.53 99.48 0.65 -11.80 16 13 N -0.71 -26.64 5.02 -446.12 -2.24 -28.88 16 14 C 0.50 17.19 6.08 87.66 0.53 17.72 16 15 O -0.57 -23.18 11.13 -3.02 -0.03 -23.21 16 16 C -0.12 -3.04 4.92 29.85 0.15 -2.89 16 17 C -0.02 -0.55 1.69 -11.54 -0.02 -0.57 16 18 H 0.07 1.90 7.69 -2.39 -0.02 1.88 16 19 C -0.12 -3.07 5.08 30.59 0.16 -2.91 16 20 C -0.14 -3.18 9.73 71.98 0.70 -2.48 16 21 C -0.07 -1.51 3.76 -19.86 -0.07 -1.59 16 22 C -0.12 -2.32 8.71 22.27 0.19 -2.13 16 23 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 24 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 25 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 26 C -0.13 -2.46 9.67 22.27 0.22 -2.24 16 27 H 0.06 2.12 5.65 -2.39 -0.01 2.11 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.51 7.85 -2.39 -0.02 1.49 16 30 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.04 1.86 3.22 -2.38 -0.01 1.85 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.40 13.51 8.54 -92.70 -0.79 12.72 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.11 2.26 7.58 -2.39 -0.02 2.25 16 36 H 0.06 1.90 5.88 -2.39 -0.01 1.88 16 37 H 0.06 1.48 7.21 -2.39 -0.02 1.46 16 38 H 0.06 1.20 7.38 -2.39 -0.02 1.18 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.13 2.15 7.13 -2.91 -0.02 2.13 16 42 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.12 2.17 7.95 -2.91 -0.02 2.15 16 Total: -1.00 -65.55 348.84 3.87 -61.68 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.10 Total: 27.16 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.07 Total: -27.49 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -1.94 Total: -84.94 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.03 Total: -23.21 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.67 Total: 46.81 kcal Total: -65.55 3.87 -61.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.300 kcal (2) G-P(sol) polarization free energy of solvation -65.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds