Wall clock time and date at job start Tue Mar 31 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 6 6 C 1.50700 * 109.47318 * 64.99944 * 5 3 2 7 7 O 1.21283 * 119.99679 * 359.97438 * 6 5 3 8 8 N 1.34775 * 119.99937 * 180.02562 * 6 5 3 9 9 C 1.46496 * 119.99911 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47183 * 34.99404 * 9 8 6 11 11 C 1.50705 * 109.47344 * 154.99573 * 9 8 6 12 12 H 1.07996 * 119.99441 * 359.97438 * 11 9 8 13 13 C 1.37871 * 119.99927 * 179.97438 * 11 9 8 14 14 N 1.31518 * 120.00338 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99954 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47120 * 89.99663 * 15 13 11 17 17 H 1.48498 * 109.47159 * 210.00059 * 15 13 11 18 18 H 1.48505 * 109.47089 * 329.99900 * 15 13 11 19 19 C 1.53001 * 109.47004 * 274.99783 * 9 8 6 20 20 C 1.52990 * 109.47641 * 64.99887 * 19 9 8 21 21 C 1.50697 * 109.47204 * 65.00067 * 3 2 1 22 22 C 1.38230 * 120.00236 * 59.72651 * 21 3 2 23 23 C 1.38233 * 120.00241 * 179.80600 * 22 21 3 24 24 C 1.38235 * 119.99681 * 0.40237 * 23 22 21 25 25 C 1.38238 * 120.00214 * 359.85149 * 24 23 22 26 26 C 1.38236 * 119.99502 * 239.99702 * 21 3 2 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 32 32 H 1.09004 * 109.46733 * 184.99994 * 5 3 2 33 33 H 1.09000 * 109.46628 * 304.99786 * 5 3 2 34 34 H 0.97000 * 120.00041 * 359.97438 * 8 6 5 35 35 H 0.97002 * 119.99599 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47267 * 185.00658 * 19 9 8 37 37 H 1.09001 * 109.46843 * 304.99633 * 19 9 8 38 38 H 1.09009 * 109.47327 * 300.00175 * 20 19 9 39 39 H 1.09001 * 109.47209 * 59.99970 * 20 19 9 40 40 H 1.09002 * 109.47728 * 180.02562 * 20 19 9 41 41 H 1.08005 * 119.99973 * 359.97438 * 22 21 3 42 42 H 1.07992 * 120.00440 * 180.22676 * 23 22 21 43 43 H 1.08000 * 120.00238 * 179.83218 * 24 23 22 44 44 H 1.07998 * 120.00150 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.00337 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 6 3.9589 0.8821 -1.4673 7 8 3.1043 0.5156 -2.2459 8 7 5.2611 0.7856 -1.8013 9 6 5.6441 0.2396 -3.1056 10 1 4.9076 0.5339 -3.8533 11 6 6.9978 0.7746 -3.4963 12 1 7.5202 1.4537 -2.8389 13 6 7.5691 0.3970 -4.6929 14 7 6.9331 -0.4305 -5.4932 15 14 9.2473 1.0595 -5.1768 16 1 10.3043 0.1482 -4.6696 17 1 9.3372 1.1469 -6.6565 18 1 9.4345 2.4104 -4.5890 19 6 5.7038 -1.2870 -3.0219 20 6 4.3031 -1.8379 -2.7481 21 6 1.6413 2.1163 1.2877 22 6 2.0720 1.6049 2.4975 23 6 1.7097 2.2252 3.6785 24 6 0.9097 3.3522 3.6500 25 6 0.4745 3.8606 2.4403 26 6 0.8402 3.2425 1.2592 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9355 2.4655 -0.0367 33 1 3.9953 0.8311 0.6659 34 1 5.9446 1.0784 -1.1784 35 1 7.3354 -0.6964 -6.3349 36 1 6.0742 -1.6884 -3.9651 37 1 6.3741 -1.5805 -2.2140 38 1 3.9327 -1.4365 -1.8047 39 1 3.6328 -1.5443 -3.5559 40 1 4.3456 -2.9255 -2.6879 41 1 2.6940 0.7222 2.5200 42 1 2.0492 1.8279 4.6235 43 1 0.6243 3.8354 4.5727 44 1 -0.1508 4.7408 2.4181 45 1 0.5004 3.6397 0.3141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183939939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:07 Heat of formation + Delta-G solvation = -41.341546 kcal Electronic energy + Delta-G solvation = -23228.041690 eV Core-core repulsion = 20016.237599 eV Total energy + Delta-G solvation = -3211.804092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92323 -38.79800 -35.83323 -34.66519 -32.37420 -31.21049 -30.97347 -30.63674 -29.40168 -26.94075 -24.54396 -22.93587 -22.88784 -22.27559 -20.50486 -19.60204 -19.21277 -17.28398 -16.74326 -15.79590 -15.46268 -15.05582 -14.91262 -14.75226 -14.32780 -14.24157 -13.62528 -13.44466 -13.15046 -13.00264 -12.67771 -12.53760 -12.46452 -11.94786 -11.67646 -11.44198 -11.28711 -11.24264 -11.06043 -10.98293 -10.82566 -10.78526 -10.45661 -10.39354 -10.30273 -10.10651 -9.60700 -9.03008 -8.97638 -8.87747 -8.66200 -8.47641 -7.76582 -6.11407 -4.20677 1.31681 1.34413 3.24310 3.31440 3.33452 3.47766 3.72777 4.14506 4.39069 4.74665 4.82773 4.93639 5.03498 5.09881 5.19655 5.23007 5.38501 5.46803 5.49589 5.57250 5.68882 5.71468 5.93797 5.94169 5.97825 6.08809 6.15144 6.26568 6.38707 6.40637 6.42305 6.45327 6.47054 6.63818 6.69031 6.74545 6.96188 7.06583 7.21999 7.39607 7.50801 7.63954 7.76080 7.92829 8.20475 8.72346 8.80303 9.20257 9.47289 10.93772 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.003504 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.381497 B = 7988.357714 C = 8608.113167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C -0.031 4.031 4 H 0.086 0.914 5 C -0.136 4.136 6 C 0.501 3.499 7 O -0.546 6.546 8 N -0.711 5.711 9 C 0.270 3.730 10 H 0.048 0.952 11 C -0.534 4.534 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.882 5.882 15 Si 0.900 3.100 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.127 4.127 20 C -0.137 4.137 21 C -0.064 4.064 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.117 4.117 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.387 0.613 35 H 0.264 0.736 36 H 0.098 0.902 37 H 0.029 0.971 38 H 0.040 0.960 39 H 0.049 0.951 40 H 0.021 0.979 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 4.446 16.084 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.050 4.050 4 H 0.104 0.896 5 C -0.177 4.177 6 C 0.286 3.714 7 O -0.426 6.426 8 N -0.358 5.358 9 C 0.169 3.831 10 H 0.066 0.934 11 C -0.572 4.572 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.520 5.520 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.166 4.166 20 C -0.194 4.194 21 C -0.064 4.064 22 C -0.134 4.134 23 C -0.138 4.138 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.135 4.135 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.219 0.781 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.568 4.080 15.305 19.041 hybrid contribution 1.328 0.511 0.115 1.427 sum -9.240 4.591 15.419 18.553 Atomic orbital electron populations 1.21713 0.96254 1.01034 1.01305 1.21727 0.95722 0.95229 1.03163 1.19959 0.93997 0.96955 0.94099 0.89596 1.21762 0.96505 1.02564 0.96834 1.20332 0.83583 0.79198 0.88308 1.90633 1.49746 1.49835 1.52361 1.46520 1.05858 1.62781 1.20659 1.18749 0.95508 0.89777 0.79106 0.93379 1.21254 1.02834 1.28485 1.04665 0.92172 1.24885 0.97875 0.94867 0.96071 1.69898 1.37959 1.33022 1.11095 0.86475 0.83770 0.79286 0.77731 1.20575 1.21092 1.19886 1.21925 0.93959 0.98326 1.02398 1.21844 0.99196 0.97337 1.01010 1.19986 0.96381 0.94964 0.95039 1.21036 1.00331 1.00024 0.91962 1.21118 0.98491 0.96165 0.98030 1.21091 0.99049 0.97058 0.97756 1.21119 1.00190 0.99878 0.92624 1.21126 0.98400 0.95741 0.98270 0.92779 0.93238 0.93376 0.88923 0.92882 0.89555 0.89642 0.78095 0.92608 0.88403 0.95175 0.94146 0.93167 0.96015 0.86121 0.86372 0.86530 0.86377 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.73 37.16 0.36 -1.44 16 2 C -0.12 -1.65 5.08 -26.73 -0.14 -1.79 16 3 C -0.03 -0.42 1.69 -91.77 -0.15 -0.57 16 4 H 0.09 1.26 7.69 -51.93 -0.40 0.86 16 5 C -0.14 -1.89 4.92 -27.88 -0.14 -2.03 16 6 C 0.50 9.34 6.08 -10.99 -0.07 9.27 16 7 O -0.55 -11.84 11.12 5.55 0.06 -11.78 16 8 N -0.71 -14.30 5.02 -54.93 -0.28 -14.58 16 9 C 0.27 6.70 2.24 -69.08 -0.15 6.55 16 10 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 11 C -0.53 -14.01 8.73 -34.44 -0.30 -14.32 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 14 N -0.88 -24.65 11.29 55.43 0.63 -24.02 16 15 Si 0.90 20.57 29.54 -169.99 -5.02 15.54 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C -0.13 -3.06 5.45 -26.74 -0.15 -3.21 16 20 C -0.14 -2.99 8.51 37.15 0.32 -2.68 16 21 C -0.06 -0.75 3.76 -104.63 -0.39 -1.14 16 22 C -0.12 -1.25 8.71 -39.59 -0.34 -1.60 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.12 -1.30 9.67 -39.58 -0.38 -1.68 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.56 7.38 -51.93 -0.38 0.18 16 30 H 0.09 1.54 5.88 -51.93 -0.31 1.24 16 31 H 0.05 0.66 7.21 -51.93 -0.37 0.29 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.04 7.59 -51.93 -0.39 0.65 16 34 H 0.39 6.84 8.54 -40.82 -0.35 6.49 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.84 5.64 -51.92 -0.29 0.55 16 39 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.12 1.20 7.13 -52.48 -0.37 0.83 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.12 1.24 7.95 -52.48 -0.42 0.82 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -29.10 355.59 -9.40 -38.50 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.32 Total: 8.73 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -2.83 Total: -17.75 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.35 Total: -38.61 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.06 Total: -11.78 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.10 -9.40 -38.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.839 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds