Wall clock time and date at job start Tue Mar 31 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 6 6 C 1.50700 * 109.47318 * 64.99944 * 5 3 2 7 7 O 1.21283 * 119.99679 * 359.97438 * 6 5 3 8 8 N 1.34775 * 119.99937 * 180.02562 * 6 5 3 9 9 C 1.46496 * 119.99911 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47183 * 34.99404 * 9 8 6 11 11 C 1.50705 * 109.47344 * 154.99573 * 9 8 6 12 12 H 1.07996 * 119.99441 * 359.97438 * 11 9 8 13 13 C 1.37871 * 119.99927 * 179.97438 * 11 9 8 14 14 N 1.31518 * 120.00338 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99954 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47120 * 89.99663 * 15 13 11 17 17 H 1.48498 * 109.47159 * 210.00059 * 15 13 11 18 18 H 1.48505 * 109.47089 * 329.99900 * 15 13 11 19 19 C 1.53001 * 109.47004 * 274.99783 * 9 8 6 20 20 C 1.52990 * 109.47641 * 64.99887 * 19 9 8 21 21 C 1.50697 * 109.47204 * 65.00067 * 3 2 1 22 22 C 1.38230 * 120.00236 * 59.72651 * 21 3 2 23 23 C 1.38233 * 120.00241 * 179.80600 * 22 21 3 24 24 C 1.38235 * 119.99681 * 0.40237 * 23 22 21 25 25 C 1.38238 * 120.00214 * 359.85149 * 24 23 22 26 26 C 1.38236 * 119.99502 * 239.99702 * 21 3 2 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 32 32 H 1.09004 * 109.46733 * 184.99994 * 5 3 2 33 33 H 1.09000 * 109.46628 * 304.99786 * 5 3 2 34 34 H 0.97000 * 120.00041 * 359.97438 * 8 6 5 35 35 H 0.97002 * 119.99599 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47267 * 185.00658 * 19 9 8 37 37 H 1.09001 * 109.46843 * 304.99633 * 19 9 8 38 38 H 1.09009 * 109.47327 * 300.00175 * 20 19 9 39 39 H 1.09001 * 109.47209 * 59.99970 * 20 19 9 40 40 H 1.09002 * 109.47728 * 180.02562 * 20 19 9 41 41 H 1.08005 * 119.99973 * 359.97438 * 22 21 3 42 42 H 1.07992 * 120.00440 * 180.22676 * 23 22 21 43 43 H 1.08000 * 120.00238 * 179.83218 * 24 23 22 44 44 H 1.07998 * 120.00150 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.00337 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 6 3.9589 0.8821 -1.4673 7 8 3.1043 0.5156 -2.2459 8 7 5.2611 0.7856 -1.8013 9 6 5.6441 0.2396 -3.1056 10 1 4.9076 0.5339 -3.8533 11 6 6.9978 0.7746 -3.4963 12 1 7.5202 1.4537 -2.8389 13 6 7.5691 0.3970 -4.6929 14 7 6.9331 -0.4305 -5.4932 15 14 9.2473 1.0595 -5.1768 16 1 10.3043 0.1482 -4.6696 17 1 9.3372 1.1469 -6.6565 18 1 9.4345 2.4104 -4.5890 19 6 5.7038 -1.2870 -3.0219 20 6 4.3031 -1.8379 -2.7481 21 6 1.6413 2.1163 1.2877 22 6 2.0720 1.6049 2.4975 23 6 1.7097 2.2252 3.6785 24 6 0.9097 3.3522 3.6500 25 6 0.4745 3.8606 2.4403 26 6 0.8402 3.2425 1.2592 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9355 2.4655 -0.0367 33 1 3.9953 0.8311 0.6659 34 1 5.9446 1.0784 -1.1784 35 1 7.3354 -0.6964 -6.3349 36 1 6.0742 -1.6884 -3.9651 37 1 6.3741 -1.5805 -2.2140 38 1 3.9327 -1.4365 -1.8047 39 1 3.6328 -1.5443 -3.5559 40 1 4.3456 -2.9255 -2.6879 41 1 2.6940 0.7222 2.5200 42 1 2.0492 1.8279 4.6235 43 1 0.6243 3.8354 4.5727 44 1 -0.1508 4.7408 2.4181 45 1 0.5004 3.6397 0.3141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183939939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:07 Heat of formation + Delta-G solvation = -56.294962 kcal Electronic energy + Delta-G solvation = -23228.690119 eV Core-core repulsion = 20016.237599 eV Total energy + Delta-G solvation = -3212.452520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09793 -40.01864 -37.25289 -36.13623 -34.25879 -32.93884 -31.73762 -31.67883 -30.55774 -28.80444 -25.82236 -24.70416 -23.78452 -23.12165 -22.08795 -21.09115 -20.60274 -18.84243 -17.90614 -17.19665 -17.10499 -16.44974 -16.18897 -15.93650 -15.71502 -15.19820 -14.95228 -14.59322 -14.54284 -14.24711 -14.11832 -13.64892 -13.54873 -13.34577 -13.22334 -13.13444 -12.89522 -12.70938 -12.64733 -12.21663 -12.15412 -12.05931 -11.88930 -11.81378 -11.57156 -11.47587 -11.40302 -11.01928 -10.56764 -10.34780 -9.73350 -9.53558 -9.50904 -8.15077 -6.32231 0.53326 0.58567 1.44328 1.44952 1.55240 1.97386 2.37767 2.72959 2.98638 3.14172 3.76998 3.82100 4.12073 4.20544 4.24176 4.31499 4.38037 4.38928 4.51973 4.57050 4.60139 4.62746 4.71671 4.74273 4.79366 4.88757 4.99117 5.08898 5.09827 5.17125 5.24144 5.26340 5.30290 5.41910 5.45795 5.52165 5.58882 5.67196 5.70566 5.71968 5.83449 5.85581 5.97879 6.20307 6.21254 6.77224 7.09132 7.35815 7.69675 8.89937 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.003504 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.381497 B = 7988.357714 C = 8608.113167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C -0.024 4.024 4 H 0.063 0.937 5 C -0.123 4.123 6 C 0.497 3.503 7 O -0.579 6.579 8 N -0.710 5.710 9 C 0.279 3.721 10 H -0.004 1.004 11 C -0.548 4.548 12 H 0.070 0.930 13 C 0.015 3.985 14 N -0.915 5.915 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.074 4.074 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.132 4.132 25 C -0.125 4.125 26 C -0.132 4.132 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.402 0.598 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.024 0.976 40 H 0.042 0.958 41 H 0.129 0.871 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 5.306 18.990 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.043 4.043 4 H 0.082 0.918 5 C -0.163 4.163 6 C 0.284 3.716 7 O -0.460 6.460 8 N -0.359 5.359 9 C 0.176 3.824 10 H 0.014 0.986 11 C -0.587 4.587 12 H 0.088 0.912 13 C -0.185 4.185 14 N -0.553 5.553 15 Si 0.793 3.207 16 H -0.197 1.197 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.159 4.159 20 C -0.179 4.179 21 C -0.074 4.074 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.150 4.150 25 C -0.143 4.143 26 C -0.150 4.150 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.236 0.764 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.147 0.853 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.155 0.845 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.070 4.955 18.249 21.424 hybrid contribution 1.089 0.268 -0.761 1.355 sum -8.981 5.223 17.488 20.342 Atomic orbital electron populations 1.21653 0.95430 1.01437 1.01213 1.21653 0.96504 0.95340 1.02096 1.19811 0.93291 0.96631 0.94568 0.91820 1.21733 0.97167 1.03419 0.93957 1.21178 0.82478 0.78195 0.89723 1.90633 1.50510 1.50978 1.53909 1.46313 1.07098 1.63156 1.19379 1.18299 0.93640 0.90322 0.80170 0.98569 1.21615 1.03363 1.28596 1.05077 0.91214 1.25762 1.01605 0.95061 0.96100 1.70055 1.39645 1.34211 1.11430 0.85402 0.79229 0.78987 0.77057 1.19695 1.21319 1.18959 1.21768 0.95126 0.97938 1.01111 1.21674 0.97293 0.98546 1.00394 1.19793 0.97680 0.95572 0.94379 1.21179 1.00579 1.00445 0.91928 1.21422 0.98063 0.96056 0.98539 1.21446 0.98231 0.96818 0.98519 1.21383 1.00179 1.00366 0.92341 1.21250 0.98813 0.95985 0.98984 0.93845 0.92582 0.92417 0.92262 0.91416 0.87964 0.87077 0.76410 0.92688 0.91319 0.94247 0.93205 0.95691 0.93919 0.85325 0.84183 0.84148 0.84546 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.73 71.98 0.70 -2.71 16 2 C -0.12 -3.19 5.08 30.59 0.16 -3.03 16 3 C -0.02 -0.63 1.69 -11.54 -0.02 -0.65 16 4 H 0.06 1.92 7.69 -2.39 -0.02 1.91 16 5 C -0.12 -3.25 4.92 29.85 0.15 -3.10 16 6 C 0.50 18.64 6.08 87.66 0.53 19.18 16 7 O -0.58 -26.09 11.12 -3.04 -0.03 -26.12 16 8 N -0.71 -28.66 5.02 -446.10 -2.24 -30.90 16 9 C 0.28 14.25 2.24 44.25 0.10 14.35 16 10 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 11 C -0.55 -29.04 8.73 25.60 0.22 -28.82 16 12 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 13 C 0.01 0.79 5.29 84.65 0.45 1.24 16 14 N -0.91 -52.60 11.29 21.45 0.24 -52.36 16 15 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 19 C -0.12 -5.93 5.45 30.59 0.17 -5.76 16 20 C -0.12 -5.44 8.51 71.98 0.61 -4.83 16 21 C -0.07 -1.62 3.76 -19.87 -0.07 -1.70 16 22 C -0.12 -2.35 8.71 22.27 0.19 -2.15 16 23 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 24 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 25 C -0.12 -2.16 10.05 22.27 0.22 -1.93 16 26 C -0.13 -2.76 9.67 22.27 0.22 -2.54 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.29 7.38 -2.39 -0.02 1.27 16 30 H 0.06 2.01 5.88 -2.39 -0.01 2.00 16 31 H 0.07 1.59 7.21 -2.39 -0.02 1.57 16 32 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 33 H 0.11 2.41 7.59 -2.39 -0.02 2.39 16 34 H 0.40 13.77 8.54 -92.71 -0.79 12.98 16 35 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 36 H 0.07 3.81 5.95 -2.39 -0.01 3.80 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 2.10 5.64 -2.38 -0.01 2.09 16 39 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.13 2.17 7.13 -2.91 -0.02 2.15 16 42 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.12 2.41 7.95 -2.91 -0.02 2.39 16 Total: -1.00 -64.80 355.59 4.24 -60.56 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.17 Total: 30.64 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 4.07 Total: -26.06 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -2.00 Total: -83.26 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.03 Total: -26.12 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -64.80 4.24 -60.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.265 kcal (2) G-P(sol) polarization free energy of solvation -64.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds