Wall clock time and date at job start Tue Mar 31 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46965 * 2 1 4 4 H 1.09002 * 109.46980 * 56.31261 * 3 2 1 5 5 C 1.50697 * 109.47214 * 176.31368 * 3 2 1 6 6 H 1.08000 * 120.00057 * 119.99945 * 5 3 2 7 7 C 1.37878 * 119.99767 * 299.99942 * 5 3 2 8 8 N 1.31505 * 120.00233 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99567 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47329 * 60.00242 * 9 7 5 11 11 H 1.48503 * 109.46898 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47099 * 299.99563 * 9 7 5 13 13 N 1.46501 * 109.46658 * 296.31052 * 3 2 1 14 14 C 1.34780 * 119.99474 * 107.44442 * 13 3 2 15 15 O 1.21281 * 120.00321 * 355.16278 * 14 13 3 16 16 C 1.50695 * 119.99948 * 175.16568 * 14 13 3 17 17 C 1.52999 * 109.47460 * 185.17574 * 16 14 13 18 18 H 1.08991 * 109.47332 * 305.78224 * 17 16 14 19 19 C 1.53005 * 109.47285 * 185.77814 * 17 16 14 20 20 C 1.53000 * 109.46736 * 65.69334 * 19 17 16 21 21 C 1.50703 * 109.46994 * 65.78054 * 17 16 14 22 22 C 1.38233 * 120.00375 * 240.00116 * 21 17 16 23 23 C 1.38230 * 120.00263 * 180.02562 * 22 21 17 24 24 C 1.38240 * 119.99996 * 359.95438 * 23 22 21 25 25 C 1.38229 * 119.99862 * 359.97438 * 24 23 22 26 26 C 1.38237 * 119.99752 * 59.97933 * 21 17 16 27 27 H 1.09001 * 109.47566 * 306.51365 * 1 2 3 28 28 H 1.09003 * 109.47465 * 66.51769 * 1 2 3 29 29 H 1.09007 * 109.46696 * 186.51482 * 1 2 3 30 30 H 1.08993 * 109.47458 * 239.99655 * 2 1 3 31 31 H 1.08999 * 109.47501 * 119.99620 * 2 1 3 32 32 H 0.97002 * 120.00018 * 180.02562 * 8 7 5 33 33 H 0.96995 * 120.00424 * 287.44528 * 13 3 2 34 34 H 1.09003 * 109.47410 * 65.17444 * 16 14 13 35 35 H 1.09003 * 109.47252 * 305.18073 * 16 14 13 36 36 H 1.08995 * 109.47078 * 185.68780 * 19 17 16 37 37 H 1.08996 * 109.47062 * 305.69357 * 19 17 16 38 38 H 1.09002 * 109.46964 * 300.58285 * 20 19 17 39 39 H 1.08999 * 109.47770 * 60.58591 * 20 19 17 40 40 H 1.09002 * 109.47201 * 180.58478 * 20 19 17 41 41 H 1.07996 * 119.99270 * 359.97438 * 22 21 17 42 42 H 1.07994 * 120.00143 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99561 * 179.72436 * 24 23 22 44 44 H 1.08005 * 119.99968 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00385 * 359.97438 * 26 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6236 1.9751 0.8551 5 6 3.5441 1.4436 0.0913 6 1 4.1325 1.8942 -0.6943 7 6 4.1692 0.8694 1.1779 8 7 3.4527 0.3212 2.1348 9 14 6.0338 0.8713 1.2914 10 1 6.5282 2.2715 1.2918 11 1 6.4539 0.1982 2.5467 12 1 6.6014 0.1461 0.1264 13 7 1.6254 2.1069 -1.2382 14 6 0.6524 3.0391 -1.2095 15 8 0.0595 3.2653 -0.1760 16 6 0.3009 3.8002 -2.4618 17 6 -0.7343 4.8770 -2.1306 18 1 -1.5890 4.4186 -1.6334 19 6 -1.1979 5.5533 -3.4224 20 6 -1.9519 4.5402 -4.2861 21 6 -0.1153 5.9055 -1.2194 22 6 -0.6534 6.1320 0.0337 23 6 -0.0860 7.0757 0.8692 24 6 1.0201 7.7924 0.4522 25 6 1.5591 7.5648 -0.8002 26 6 0.9908 6.6221 -1.6364 27 1 -0.3634 0.6115 0.8259 28 1 -0.3634 0.4095 -0.9426 29 1 -0.3633 -1.0211 0.1166 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8925 -0.0825 2.8993 33 1 2.0513 1.8760 -2.0785 34 1 -0.1127 3.1135 -3.2004 35 1 1.1979 4.2702 -2.8650 36 1 -1.8578 6.3862 -3.1798 37 1 -0.3312 5.9237 -3.9698 38 1 -1.2952 3.7022 -4.5200 39 1 -2.8244 4.1774 -3.7427 40 1 -2.2732 5.0191 -5.2110 41 1 -1.5176 5.5722 0.3593 42 1 -0.5066 7.2530 1.8480 43 1 1.4607 8.5328 1.1033 44 1 2.4230 8.1250 -1.1262 45 1 1.4117 6.4446 -2.6151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183939959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:09 Heat of formation + Delta-G solvation = -41.933830 kcal Electronic energy + Delta-G solvation = -23595.621354 eV Core-core repulsion = 20383.791579 eV Total energy + Delta-G solvation = -3211.829775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.72876 -38.36664 -35.90574 -34.84732 -32.29268 -31.06604 -30.89541 -30.57605 -28.96396 -26.82426 -25.03482 -22.96111 -22.56781 -21.79367 -20.55084 -19.53008 -19.19259 -17.02008 -16.71811 -15.82245 -15.40220 -15.21581 -14.66296 -14.43506 -14.27483 -13.89534 -13.61251 -13.29908 -13.05111 -12.82974 -12.81340 -12.53252 -12.21897 -11.91640 -11.79941 -11.45429 -11.39479 -11.21103 -11.04426 -10.97407 -10.83062 -10.74857 -10.43997 -10.33454 -10.23357 -10.04107 -9.70728 -9.16761 -8.86298 -8.57639 -8.39966 -8.31360 -7.72356 -6.05727 -4.14083 1.67476 1.75031 3.28526 3.33692 3.35094 3.57467 4.09624 4.20507 4.43886 4.77930 4.92035 5.08610 5.21829 5.25035 5.26873 5.36439 5.37362 5.50779 5.57133 5.63202 5.78584 5.80807 5.87621 5.92369 5.99744 6.04988 6.22336 6.30671 6.32015 6.33482 6.34591 6.42879 6.58015 6.75909 6.81789 6.96336 6.99829 7.17185 7.32594 7.33053 7.54155 7.66601 7.76894 8.05112 8.24257 8.76458 8.86777 9.27274 9.53715 10.99202 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.005063 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.206570 B = 5528.606674 C = 6519.341664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.266 3.734 4 H 0.059 0.941 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.713 5.713 14 C 0.503 3.497 15 O -0.547 6.547 16 C -0.139 4.139 17 C -0.032 4.032 18 H 0.086 0.914 19 C -0.115 4.115 20 C -0.155 4.155 21 C -0.061 4.061 22 C -0.086 4.086 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.120 4.120 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.100 0.900 32 H 0.263 0.737 33 H 0.384 0.616 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 10.193 -10.377 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.164 3.836 4 H 0.077 0.923 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.360 5.360 14 C 0.288 3.712 15 O -0.425 6.425 16 C -0.179 4.179 17 C -0.051 4.051 18 H 0.104 0.896 19 C -0.152 4.152 20 C -0.212 4.212 21 C -0.061 4.061 22 C -0.104 4.104 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.143 4.143 26 C -0.138 4.138 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.216 0.784 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.108 10.248 -9.418 16.108 hybrid contribution 1.453 -0.261 -0.244 1.497 sum -6.655 9.988 -9.662 15.408 Atomic orbital electron populations 1.21732 0.98885 0.98801 1.00169 1.21916 0.92159 1.00177 1.02417 1.18791 0.93642 0.88849 0.82279 0.92342 1.21309 0.91120 1.37968 1.06505 0.92419 1.24879 0.98412 0.94997 0.95392 1.69869 1.35190 1.37685 1.09575 0.86576 0.85305 0.78248 0.77361 1.20284 1.21172 1.20241 1.46372 1.37074 1.39984 1.12559 1.20333 0.80544 0.80433 0.89924 1.90634 1.52100 1.66786 1.33005 1.21866 1.00230 0.98165 0.97686 1.19964 0.97776 0.93051 0.94331 0.89566 1.21584 1.00133 0.98296 0.95231 1.21851 1.00504 0.99439 0.99421 1.19678 0.95539 0.95911 0.94965 1.20986 1.00024 0.96227 0.93191 1.21097 0.96740 0.96873 0.99363 1.21039 0.96867 1.00338 0.96378 1.21009 0.99771 0.98861 0.94629 1.20909 0.96334 0.96875 0.99669 0.93288 0.95040 0.95199 0.94962 0.88225 0.92650 0.78423 0.89242 0.89680 0.91776 0.91864 0.92355 0.92623 0.92904 0.86265 0.86589 0.86753 0.86683 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.55 37.16 0.35 -2.59 16 2 C -0.13 -3.05 5.44 -26.73 -0.15 -3.19 16 3 C 0.27 6.71 2.26 -69.08 -0.16 6.55 16 4 H 0.06 1.73 7.05 -51.93 -0.37 1.37 16 5 C -0.53 -14.29 8.83 -34.44 -0.30 -14.59 16 6 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 8 N -0.89 -25.13 11.30 55.43 0.63 -24.50 16 9 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.71 -14.65 4.47 -54.93 -0.25 -14.90 16 14 C 0.50 9.77 7.07 -10.99 -0.08 9.69 16 15 O -0.55 -12.50 13.84 5.56 0.08 -12.42 16 16 C -0.14 -1.95 4.96 -27.89 -0.14 -2.09 16 17 C -0.03 -0.43 1.68 -91.77 -0.15 -0.59 16 18 H 0.09 1.26 7.58 -51.93 -0.39 0.86 16 19 C -0.11 -1.18 5.13 -26.73 -0.14 -1.32 16 20 C -0.15 -1.40 9.70 37.16 0.36 -1.04 16 21 C -0.06 -0.92 3.84 -104.62 -0.40 -1.32 16 22 C -0.09 -1.37 8.80 -39.59 -0.35 -1.72 16 23 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 24 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 25 C -0.12 -1.74 10.05 -39.58 -0.40 -2.13 16 26 C -0.12 -1.70 8.70 -39.58 -0.34 -2.05 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.62 7.64 -51.93 -0.40 0.22 16 29 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 2.66 5.98 -51.93 -0.31 2.34 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 33 H 0.38 6.87 8.82 -40.82 -0.36 6.51 16 34 H 0.09 1.06 6.33 -51.93 -0.33 0.73 16 35 H 0.08 1.10 7.20 -51.93 -0.37 0.72 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.60 7.60 -51.93 -0.39 0.21 16 38 H 0.06 0.52 6.44 -51.93 -0.33 0.18 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.12 1.87 7.95 -52.49 -0.42 1.45 16 42 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 45 H 0.12 1.40 7.14 -52.49 -0.37 1.03 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -30.61 360.74 -9.31 -39.92 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.40 Total: 9.55 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -2.78 Total: -19.12 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.38 Total: -39.40 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.61 -9.31 -39.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.019 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds