Wall clock time and date at job start Tue Mar 31 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46965 * 2 1 4 4 H 1.09002 * 109.46980 * 56.31261 * 3 2 1 5 5 C 1.50697 * 109.47214 * 176.31368 * 3 2 1 6 6 H 1.08000 * 120.00057 * 119.99945 * 5 3 2 7 7 C 1.37878 * 119.99767 * 299.99942 * 5 3 2 8 8 N 1.31505 * 120.00233 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99567 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47329 * 60.00242 * 9 7 5 11 11 H 1.48503 * 109.46898 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47099 * 299.99563 * 9 7 5 13 13 N 1.46501 * 109.46658 * 296.31052 * 3 2 1 14 14 C 1.34780 * 119.99474 * 107.44442 * 13 3 2 15 15 O 1.21281 * 120.00321 * 355.16278 * 14 13 3 16 16 C 1.50695 * 119.99948 * 175.16568 * 14 13 3 17 17 C 1.52999 * 109.47460 * 185.17574 * 16 14 13 18 18 H 1.08991 * 109.47332 * 305.78224 * 17 16 14 19 19 C 1.53005 * 109.47285 * 185.77814 * 17 16 14 20 20 C 1.53000 * 109.46736 * 65.69334 * 19 17 16 21 21 C 1.50703 * 109.46994 * 65.78054 * 17 16 14 22 22 C 1.38233 * 120.00375 * 240.00116 * 21 17 16 23 23 C 1.38230 * 120.00263 * 180.02562 * 22 21 17 24 24 C 1.38240 * 119.99996 * 359.95438 * 23 22 21 25 25 C 1.38229 * 119.99862 * 359.97438 * 24 23 22 26 26 C 1.38237 * 119.99752 * 59.97933 * 21 17 16 27 27 H 1.09001 * 109.47566 * 306.51365 * 1 2 3 28 28 H 1.09003 * 109.47465 * 66.51769 * 1 2 3 29 29 H 1.09007 * 109.46696 * 186.51482 * 1 2 3 30 30 H 1.08993 * 109.47458 * 239.99655 * 2 1 3 31 31 H 1.08999 * 109.47501 * 119.99620 * 2 1 3 32 32 H 0.97002 * 120.00018 * 180.02562 * 8 7 5 33 33 H 0.96995 * 120.00424 * 287.44528 * 13 3 2 34 34 H 1.09003 * 109.47410 * 65.17444 * 16 14 13 35 35 H 1.09003 * 109.47252 * 305.18073 * 16 14 13 36 36 H 1.08995 * 109.47078 * 185.68780 * 19 17 16 37 37 H 1.08996 * 109.47062 * 305.69357 * 19 17 16 38 38 H 1.09002 * 109.46964 * 300.58285 * 20 19 17 39 39 H 1.08999 * 109.47770 * 60.58591 * 20 19 17 40 40 H 1.09002 * 109.47201 * 180.58478 * 20 19 17 41 41 H 1.07996 * 119.99270 * 359.97438 * 22 21 17 42 42 H 1.07994 * 120.00143 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99561 * 179.72436 * 24 23 22 44 44 H 1.08005 * 119.99968 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00385 * 359.97438 * 26 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6236 1.9751 0.8551 5 6 3.5441 1.4436 0.0913 6 1 4.1325 1.8942 -0.6943 7 6 4.1692 0.8694 1.1779 8 7 3.4527 0.3212 2.1348 9 14 6.0338 0.8713 1.2914 10 1 6.5282 2.2715 1.2918 11 1 6.4539 0.1982 2.5467 12 1 6.6014 0.1461 0.1264 13 7 1.6254 2.1069 -1.2382 14 6 0.6524 3.0391 -1.2095 15 8 0.0595 3.2653 -0.1760 16 6 0.3009 3.8002 -2.4618 17 6 -0.7343 4.8770 -2.1306 18 1 -1.5890 4.4186 -1.6334 19 6 -1.1979 5.5533 -3.4224 20 6 -1.9519 4.5402 -4.2861 21 6 -0.1153 5.9055 -1.2194 22 6 -0.6534 6.1320 0.0337 23 6 -0.0860 7.0757 0.8692 24 6 1.0201 7.7924 0.4522 25 6 1.5591 7.5648 -0.8002 26 6 0.9908 6.6221 -1.6364 27 1 -0.3634 0.6115 0.8259 28 1 -0.3634 0.4095 -0.9426 29 1 -0.3633 -1.0211 0.1166 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8925 -0.0825 2.8993 33 1 2.0513 1.8760 -2.0785 34 1 -0.1127 3.1135 -3.2004 35 1 1.1979 4.2702 -2.8650 36 1 -1.8578 6.3862 -3.1798 37 1 -0.3312 5.9237 -3.9698 38 1 -1.2952 3.7022 -4.5200 39 1 -2.8244 4.1774 -3.7427 40 1 -2.2732 5.0191 -5.2110 41 1 -1.5176 5.5722 0.3593 42 1 -0.5066 7.2530 1.8480 43 1 1.4607 8.5328 1.1033 44 1 2.4230 8.1250 -1.1262 45 1 1.4117 6.4446 -2.6151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183939959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:09 Heat of formation + Delta-G solvation = -58.225796 kcal Electronic energy + Delta-G solvation = -23596.327827 eV Core-core repulsion = 20383.791579 eV Total energy + Delta-G solvation = -3212.536248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01839 -39.77356 -37.26297 -36.40225 -34.24243 -32.80044 -31.90041 -31.68429 -30.26669 -28.65010 -26.18070 -24.82978 -23.62408 -22.81033 -22.14985 -21.23760 -20.44599 -18.80165 -17.81637 -17.51299 -17.08634 -16.50245 -16.18255 -15.78171 -15.57682 -15.13491 -14.90676 -14.60379 -14.44828 -14.25856 -14.11301 -13.95374 -13.37957 -13.31680 -13.16105 -13.07023 -12.88627 -12.69932 -12.62738 -12.43706 -12.15906 -12.01744 -11.90653 -11.72249 -11.63455 -11.48360 -11.27716 -11.15115 -10.59185 -10.35808 -9.70941 -9.54096 -9.42067 -8.12891 -6.29602 0.56446 0.61523 1.42208 1.44192 1.51590 2.04316 2.39490 2.78898 2.97565 3.15338 3.77178 3.89030 4.02386 4.20810 4.21540 4.32850 4.38504 4.47123 4.53946 4.54650 4.57258 4.67006 4.70626 4.72882 4.76901 4.85626 5.03174 5.07416 5.12090 5.20053 5.24623 5.26750 5.30716 5.39289 5.41185 5.53802 5.58376 5.66174 5.69375 5.72719 5.80469 5.88305 6.09956 6.22277 6.23760 6.80328 7.11056 7.37961 7.75830 8.90983 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.005063 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.206570 B = 5528.606674 C = 6519.341664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.276 3.724 4 H 0.003 0.997 5 C -0.546 4.546 6 H 0.063 0.937 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.963 3.037 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.263 1.263 13 N -0.711 5.711 14 C 0.495 3.505 15 O -0.586 6.586 16 C -0.126 4.126 17 C -0.029 4.029 18 H 0.065 0.935 19 C -0.106 4.106 20 C -0.154 4.154 21 C -0.072 4.072 22 C -0.115 4.115 23 C -0.140 4.140 24 C -0.139 4.139 25 C -0.132 4.132 26 C -0.128 4.128 27 H 0.022 0.978 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.263 0.737 33 H 0.401 0.599 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.136 0.864 44 H 0.141 0.859 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.620 10.746 -13.120 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.021 0.979 5 C -0.584 4.584 6 H 0.081 0.919 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.788 3.212 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.187 1.187 13 N -0.360 5.360 14 C 0.283 3.717 15 O -0.467 6.467 16 C -0.166 4.166 17 C -0.048 4.048 18 H 0.083 0.917 19 C -0.143 4.143 20 C -0.211 4.211 21 C -0.072 4.072 22 C -0.133 4.133 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.146 4.146 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.235 0.765 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.159 0.841 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.009 10.808 -12.206 17.746 hybrid contribution 1.066 -0.398 0.658 1.314 sum -5.943 10.410 -11.548 16.645 Atomic orbital electron populations 1.21573 0.97008 0.99811 0.99822 1.21744 0.93767 0.99077 1.01429 1.18322 0.92768 0.89165 0.82558 0.97858 1.21661 0.92160 1.37834 1.06772 0.91876 1.25725 1.03001 0.94641 0.95057 1.70029 1.36980 1.38391 1.10064 0.85540 0.79762 0.78201 0.77684 1.20173 1.21103 1.18750 1.46166 1.37755 1.40337 1.11708 1.21319 0.79316 0.79797 0.91310 1.90632 1.53237 1.67607 1.35187 1.21873 1.01412 0.98198 0.95101 1.19960 0.96721 0.92596 0.95514 0.91663 1.21521 1.00819 0.98304 0.93667 1.21855 1.00219 0.99349 0.99716 1.19947 0.96016 0.96440 0.94845 1.21109 1.00550 0.97213 0.94475 1.21350 0.97438 0.97083 0.99888 1.21370 0.96557 1.00643 0.97160 1.21419 1.00326 0.98783 0.94403 1.21233 0.95938 0.96624 1.00821 0.95908 0.93576 0.92865 0.93685 0.91288 0.92774 0.76527 0.86185 0.87583 0.91837 0.90313 0.91777 0.93291 0.91273 0.87636 0.85683 0.84623 0.84133 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 9.55 71.98 0.69 -4.62 16 2 C -0.12 -5.84 5.44 30.60 0.17 -5.67 16 3 C 0.28 14.17 2.26 44.25 0.10 14.27 16 4 H 0.00 0.21 7.05 -2.39 -0.02 0.20 16 5 C -0.55 -29.54 8.83 25.60 0.23 -29.32 16 6 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 7 C 0.02 0.85 5.30 84.66 0.45 1.30 16 8 N -0.92 -53.31 11.30 21.45 0.24 -53.07 16 9 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 N -0.71 -28.84 4.47 -446.09 -1.99 -30.83 16 14 C 0.50 19.06 7.07 87.65 0.62 19.68 16 15 O -0.59 -27.72 13.84 -3.03 -0.04 -27.76 16 16 C -0.13 -3.25 4.96 29.85 0.15 -3.10 16 17 C -0.03 -0.74 1.68 -11.54 -0.02 -0.76 16 18 H 0.06 1.93 7.58 -2.39 -0.02 1.91 16 19 C -0.11 -1.90 5.13 30.60 0.16 -1.74 16 20 C -0.15 -2.33 9.70 71.98 0.70 -1.63 16 21 C -0.07 -2.15 3.84 -19.86 -0.08 -2.23 16 22 C -0.12 -3.83 8.80 22.27 0.20 -3.64 16 23 C -0.14 -4.29 10.05 22.27 0.22 -4.06 16 24 C -0.14 -3.85 10.05 22.27 0.22 -3.62 16 25 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 26 C -0.13 -3.41 8.70 22.27 0.19 -3.22 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.79 7.64 -2.39 -0.02 1.77 16 29 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 3.78 5.98 -2.39 -0.01 3.76 16 32 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.40 13.57 8.82 -92.71 -0.82 12.75 16 34 H 0.12 2.40 6.33 -2.39 -0.02 2.38 16 35 H 0.11 2.34 7.20 -2.39 -0.02 2.32 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.20 7.60 -2.39 -0.02 1.18 16 38 H 0.06 0.90 6.44 -2.39 -0.02 0.88 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 3.63 7.95 -2.91 -0.02 3.61 16 42 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 44 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 45 H 0.14 2.91 7.14 -2.91 -0.02 2.89 16 Total: -1.00 -68.90 360.74 4.60 -64.31 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.15 Total: 33.84 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 4.22 Total: -31.58 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -1.75 Total: -83.90 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.04 Total: -27.76 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -68.90 4.60 -64.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.080 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds