Wall clock time and date at job start Tue Mar 31 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47070 * 2 1 4 4 H 1.09002 * 109.46605 * 304.99588 * 3 2 1 5 5 C 1.50699 * 109.47053 * 184.99874 * 3 2 1 6 6 H 1.08001 * 120.00161 * 239.72406 * 5 3 2 7 7 C 1.37880 * 120.00027 * 60.00116 * 5 3 2 8 8 N 1.31508 * 120.00093 * 359.71778 * 7 5 3 9 9 Si 1.86797 * 119.99845 * 179.72613 * 7 5 3 10 10 H 1.48505 * 109.47530 * 59.99691 * 9 7 5 11 11 H 1.48503 * 109.47187 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47184 * 299.99632 * 9 7 5 13 13 N 1.46499 * 109.47062 * 64.99800 * 3 2 1 14 14 C 1.34775 * 119.99804 * 274.99654 * 13 3 2 15 15 O 1.21285 * 120.00127 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99903 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47008 * 185.76118 * 16 14 13 18 18 H 1.09001 * 109.47270 * 306.12259 * 17 16 14 19 19 C 1.53003 * 109.46998 * 186.12868 * 17 16 14 20 20 C 1.52998 * 109.47225 * 174.45266 * 19 17 16 21 21 C 1.50700 * 109.47533 * 66.12777 * 17 16 14 22 22 C 1.38234 * 119.99651 * 59.71998 * 21 17 16 23 23 C 1.38239 * 119.99646 * 179.78746 * 22 21 17 24 24 C 1.38234 * 119.99937 * 0.45059 * 23 22 21 25 25 C 1.38235 * 120.00100 * 359.80662 * 24 23 22 26 26 C 1.38229 * 119.99913 * 240.00183 * 21 17 16 27 27 H 1.08998 * 109.47581 * 300.00499 * 1 2 3 28 28 H 1.09007 * 109.46875 * 60.00593 * 1 2 3 29 29 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47497 * 240.00051 * 2 1 3 31 31 H 1.08995 * 109.47237 * 119.99635 * 2 1 3 32 32 H 0.97004 * 120.00030 * 180.02562 * 8 7 5 33 33 H 0.96989 * 120.00072 * 95.00359 * 13 3 2 34 34 H 1.08995 * 109.47315 * 305.76372 * 16 14 13 35 35 H 1.09002 * 109.46929 * 65.76455 * 16 14 13 36 36 H 1.09005 * 109.47171 * 294.45346 * 19 17 16 37 37 H 1.09003 * 109.46969 * 54.45193 * 19 17 16 38 38 H 1.09004 * 109.47253 * 305.46165 * 20 19 17 39 39 H 1.09005 * 109.47197 * 65.46481 * 20 19 17 40 40 H 1.08995 * 109.47291 * 185.46257 * 20 19 17 41 41 H 1.08001 * 120.00477 * 0.02562 * 22 21 17 42 42 H 1.07997 * 120.00211 * 180.27460 * 23 22 21 43 43 H 1.08003 * 120.00052 * 179.82904 * 24 23 22 44 44 H 1.08003 * 119.99949 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.00499 * 359.97438 * 26 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1470 1.8929 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4066 0.3322 -2.1704 9 14 6.0047 0.8875 -1.3850 10 1 6.6019 0.1579 -0.2377 11 1 6.3977 0.2219 -2.6530 12 1 6.4943 2.2895 -1.3890 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3668 15 8 -0.3396 2.6320 0.4342 16 6 0.0361 3.3377 2.6547 17 6 -1.4300 3.7672 2.5727 18 1 -1.5811 4.3758 1.6811 19 6 -1.7925 4.5838 3.8148 20 6 -3.2144 5.1295 3.6694 21 6 -2.3084 2.5448 2.5013 22 6 -2.2844 1.6157 3.5245 23 6 -3.0934 0.4966 3.4611 24 6 -3.9195 0.3019 2.3700 25 6 -3.9396 1.2283 1.3442 26 6 -3.1338 2.3497 1.4098 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.8297 -0.0663 -2.9470 33 1 2.2718 2.1233 1.9977 34 1 0.1651 2.6419 3.4836 35 1 0.6632 4.2147 2.8156 36 1 -1.7363 3.9468 4.6976 37 1 -1.0938 5.4137 3.9206 38 1 -3.2961 5.6867 2.7361 39 1 -3.9226 4.3009 3.6611 40 1 -3.4377 5.7898 4.5074 41 1 -1.6364 1.7661 4.3754 42 1 -3.0779 -0.2271 4.2626 43 1 -4.5495 -0.5739 2.3191 44 1 -4.5847 1.0760 0.4915 45 1 -3.1496 3.0735 0.6083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183939976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:12 Heat of formation + Delta-G solvation = -39.639863 kcal Electronic energy + Delta-G solvation = -23847.803258 eV Core-core repulsion = 20636.072957 eV Total energy + Delta-G solvation = -3211.730301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.81575 -38.45334 -35.81980 -34.74069 -32.31379 -31.15368 -30.67335 -30.59901 -29.25417 -26.91165 -24.57441 -22.82652 -22.79616 -22.09617 -20.38976 -19.52849 -19.16378 -16.96609 -16.81650 -15.62935 -15.54206 -15.19405 -14.59239 -14.56001 -14.27906 -14.09646 -13.84171 -13.23369 -13.01109 -12.93572 -12.61380 -12.36665 -12.15398 -12.03602 -11.62869 -11.39789 -11.25593 -11.10341 -11.05704 -10.99712 -10.92363 -10.76880 -10.45878 -10.41848 -10.28184 -10.07540 -9.55105 -9.00575 -8.85728 -8.61977 -8.46263 -8.33619 -7.70326 -6.08699 -4.18061 1.63702 1.70755 3.26686 3.32092 3.33134 3.56640 4.06084 4.16708 4.41370 4.79312 4.91753 5.12260 5.18591 5.20948 5.22333 5.28525 5.34999 5.50867 5.59125 5.66755 5.74225 5.80469 5.88684 5.93506 6.00319 6.04264 6.19792 6.24540 6.32070 6.40643 6.47396 6.55923 6.71695 6.76137 6.78008 6.97139 7.13580 7.27890 7.28780 7.45473 7.56792 7.67228 7.80691 7.96653 8.24467 8.77307 8.84035 9.26595 9.50192 10.96336 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.004370 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.120085 B = 6405.395372 C = 7139.600787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.273 3.727 4 H 0.047 0.953 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.713 5.713 14 C 0.500 3.500 15 O -0.542 6.542 16 C -0.139 4.139 17 C -0.034 4.034 18 H 0.087 0.913 19 C -0.116 4.116 20 C -0.150 4.150 21 C -0.054 4.054 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.122 4.122 26 C -0.086 4.086 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.017 0.983 30 H 0.097 0.903 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.574 4.728 12.447 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.573 4.573 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.361 5.361 14 C 0.285 3.715 15 O -0.421 6.421 16 C -0.179 4.179 17 C -0.053 4.053 18 H 0.105 0.895 19 C -0.153 4.153 20 C -0.207 4.207 21 C -0.054 4.054 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.140 4.140 26 C -0.104 4.104 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.115 0.885 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.217 0.783 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.098 4.592 11.557 17.350 hybrid contribution 1.459 -0.231 0.196 1.490 sum -10.639 4.362 11.753 16.442 Atomic orbital electron populations 1.21797 0.98123 0.97745 1.01362 1.21917 0.92728 0.99881 1.01972 1.18706 0.93900 0.89114 0.81209 0.93530 1.21223 0.90938 1.38817 1.06276 0.92280 1.24879 0.98463 0.94877 0.95429 1.69887 1.35138 1.37497 1.09456 0.86546 0.85066 0.78263 0.77423 1.20210 1.21160 1.20229 1.46487 1.14852 1.56359 1.18361 1.20306 0.82610 0.79437 0.89193 1.90653 1.51114 1.59699 1.40619 1.21820 0.96804 1.01533 0.97735 1.20014 0.92029 0.94127 0.99157 0.89469 1.21608 0.97180 0.99179 0.97366 1.21750 0.96820 1.00809 1.01340 1.19627 0.96060 0.95700 0.94032 1.20898 0.99600 0.94721 0.98761 1.20992 0.97273 0.97654 0.98373 1.21023 0.99880 0.99123 0.94684 1.21092 0.99691 0.94828 0.98375 1.20986 0.94942 0.97551 0.96885 0.93826 0.93432 0.96342 0.88533 0.95338 0.92586 0.78260 0.89808 0.89306 0.91882 0.91730 0.92704 0.92580 0.93109 0.86753 0.86781 0.86841 0.86669 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.88 2.24 -69.08 -0.16 6.73 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.95 11.28 55.43 0.63 -24.32 16 9 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 N -0.71 -14.65 5.02 -54.93 -0.28 -14.93 16 14 C 0.50 9.52 6.09 -10.98 -0.07 9.45 16 15 O -0.54 -11.97 11.62 5.55 0.06 -11.90 16 16 C -0.14 -1.90 5.07 -27.88 -0.14 -2.04 16 17 C -0.03 -0.45 1.68 -91.77 -0.15 -0.60 16 18 H 0.09 1.26 7.56 -51.93 -0.39 0.86 16 19 C -0.12 -1.16 5.30 -26.73 -0.14 -1.31 16 20 C -0.15 -1.45 9.64 37.16 0.36 -1.09 16 21 C -0.05 -0.76 2.97 -104.63 -0.31 -1.08 16 22 C -0.12 -1.62 8.58 -39.58 -0.34 -1.96 16 23 C -0.12 -1.62 10.05 -39.58 -0.40 -2.01 16 24 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 25 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 26 C -0.09 -1.29 8.83 -39.58 -0.35 -1.64 16 27 H 0.04 0.98 5.64 -51.93 -0.29 0.69 16 28 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 2.65 5.94 -51.93 -0.31 2.35 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.39 6.96 8.54 -40.82 -0.35 6.61 16 34 H 0.08 1.03 7.18 -51.93 -0.37 0.65 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.60 7.23 -51.93 -0.38 0.22 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.59 7.58 -51.93 -0.39 0.19 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.11 1.31 7.04 -52.49 -0.37 0.94 16 42 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.11 1.25 8.06 -52.48 -0.42 0.82 16 44 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 45 H 0.12 1.81 7.95 -52.49 -0.42 1.39 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -29.97 356.47 -9.37 -39.35 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.42 Total: 9.28 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -2.72 Total: -18.55 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.35 Total: -39.25 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.06 Total: -11.90 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.97 -9.37 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.294 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds