Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47070 * 2 1 4 4 H 1.09002 * 109.46605 * 304.99588 * 3 2 1 5 5 C 1.50699 * 109.47053 * 184.99874 * 3 2 1 6 6 H 1.08001 * 120.00161 * 239.72406 * 5 3 2 7 7 C 1.37880 * 120.00027 * 60.00116 * 5 3 2 8 8 N 1.31508 * 120.00093 * 359.71778 * 7 5 3 9 9 Si 1.86797 * 119.99845 * 179.72613 * 7 5 3 10 10 H 1.48505 * 109.47530 * 59.99691 * 9 7 5 11 11 H 1.48503 * 109.47187 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47184 * 299.99632 * 9 7 5 13 13 N 1.46499 * 109.47062 * 64.99800 * 3 2 1 14 14 C 1.34775 * 119.99804 * 274.99654 * 13 3 2 15 15 O 1.21285 * 120.00127 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99903 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47008 * 185.76118 * 16 14 13 18 18 H 1.09001 * 109.47270 * 306.12259 * 17 16 14 19 19 C 1.53003 * 109.46998 * 186.12868 * 17 16 14 20 20 C 1.52998 * 109.47225 * 174.45266 * 19 17 16 21 21 C 1.50700 * 109.47533 * 66.12777 * 17 16 14 22 22 C 1.38234 * 119.99651 * 59.71998 * 21 17 16 23 23 C 1.38239 * 119.99646 * 179.78746 * 22 21 17 24 24 C 1.38234 * 119.99937 * 0.45059 * 23 22 21 25 25 C 1.38235 * 120.00100 * 359.80662 * 24 23 22 26 26 C 1.38229 * 119.99913 * 240.00183 * 21 17 16 27 27 H 1.08998 * 109.47581 * 300.00499 * 1 2 3 28 28 H 1.09007 * 109.46875 * 60.00593 * 1 2 3 29 29 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47497 * 240.00051 * 2 1 3 31 31 H 1.08995 * 109.47237 * 119.99635 * 2 1 3 32 32 H 0.97004 * 120.00030 * 180.02562 * 8 7 5 33 33 H 0.96989 * 120.00072 * 95.00359 * 13 3 2 34 34 H 1.08995 * 109.47315 * 305.76372 * 16 14 13 35 35 H 1.09002 * 109.46929 * 65.76455 * 16 14 13 36 36 H 1.09005 * 109.47171 * 294.45346 * 19 17 16 37 37 H 1.09003 * 109.46969 * 54.45193 * 19 17 16 38 38 H 1.09004 * 109.47253 * 305.46165 * 20 19 17 39 39 H 1.09005 * 109.47197 * 65.46481 * 20 19 17 40 40 H 1.08995 * 109.47291 * 185.46257 * 20 19 17 41 41 H 1.08001 * 120.00477 * 0.02562 * 22 21 17 42 42 H 1.07997 * 120.00211 * 180.27460 * 23 22 21 43 43 H 1.08003 * 120.00052 * 179.82904 * 24 23 22 44 44 H 1.08003 * 119.99949 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.00499 * 359.97438 * 26 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1470 1.8929 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4066 0.3322 -2.1704 9 14 6.0047 0.8875 -1.3850 10 1 6.6019 0.1579 -0.2377 11 1 6.3977 0.2219 -2.6530 12 1 6.4943 2.2895 -1.3890 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3668 15 8 -0.3396 2.6320 0.4342 16 6 0.0361 3.3377 2.6547 17 6 -1.4300 3.7672 2.5727 18 1 -1.5811 4.3758 1.6811 19 6 -1.7925 4.5838 3.8148 20 6 -3.2144 5.1295 3.6694 21 6 -2.3084 2.5448 2.5013 22 6 -2.2844 1.6157 3.5245 23 6 -3.0934 0.4966 3.4611 24 6 -3.9195 0.3019 2.3700 25 6 -3.9396 1.2283 1.3442 26 6 -3.1338 2.3497 1.4098 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.8297 -0.0663 -2.9470 33 1 2.2718 2.1233 1.9977 34 1 0.1651 2.6419 3.4836 35 1 0.6632 4.2147 2.8156 36 1 -1.7363 3.9468 4.6976 37 1 -1.0938 5.4137 3.9206 38 1 -3.2961 5.6867 2.7361 39 1 -3.9226 4.3009 3.6611 40 1 -3.4377 5.7898 4.5074 41 1 -1.6364 1.7661 4.3754 42 1 -3.0779 -0.2271 4.2626 43 1 -4.5495 -0.5739 2.3191 44 1 -4.5847 1.0760 0.4915 45 1 -3.1496 3.0735 0.6083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183939976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = -55.532885 kcal Electronic energy + Delta-G solvation = -23848.492431 eV Core-core repulsion = 20636.072957 eV Total energy + Delta-G solvation = -3212.419474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07373 -39.81839 -37.16069 -36.27829 -34.22447 -32.88561 -31.68766 -31.66444 -30.48335 -28.80043 -25.83959 -24.67122 -23.75757 -23.09890 -22.03970 -21.01609 -20.55870 -18.76831 -17.82901 -17.27532 -17.12821 -16.58554 -16.07883 -15.97978 -15.52118 -15.12784 -14.93675 -14.65613 -14.54518 -14.17217 -14.10307 -13.58369 -13.48059 -13.29039 -13.17058 -13.04147 -12.89526 -12.67279 -12.58302 -12.18794 -12.16828 -12.10877 -11.91996 -11.84726 -11.55084 -11.43467 -11.35851 -11.02882 -10.56115 -10.37806 -9.67118 -9.51345 -9.38694 -8.14181 -6.31661 0.60552 0.65513 1.44555 1.46310 1.54034 2.06550 2.38559 2.79508 3.01734 3.14898 3.81991 3.89073 4.05169 4.22131 4.24483 4.35773 4.40727 4.48398 4.50607 4.58413 4.60059 4.71523 4.74404 4.76555 4.81414 4.92253 5.02830 5.09481 5.13466 5.16100 5.26467 5.28881 5.32264 5.41069 5.47367 5.49206 5.58952 5.69546 5.70788 5.73795 5.83638 5.92865 5.99922 6.21056 6.26957 6.78091 7.14577 7.36741 7.76239 8.90633 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.004370 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.120085 B = 6405.395372 C = 7139.600787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C 0.282 3.718 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.713 5.713 14 C 0.492 3.508 15 O -0.577 6.577 16 C -0.127 4.127 17 C -0.032 4.032 18 H 0.063 0.937 19 C -0.108 4.108 20 C -0.148 4.148 21 C -0.062 4.062 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.112 4.112 27 H 0.049 0.951 28 H 0.020 0.980 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.068 0.932 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.689 4.820 15.452 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.157 4.157 3 C 0.179 3.821 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.362 5.362 14 C 0.280 3.720 15 O -0.457 6.457 16 C -0.166 4.166 17 C -0.051 4.051 18 H 0.081 0.919 19 C -0.145 4.145 20 C -0.206 4.206 21 C -0.062 4.062 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.156 4.156 25 C -0.155 4.155 26 C -0.130 4.130 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.235 0.765 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.152 0.848 44 H 0.140 0.860 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.217 4.704 14.604 19.006 hybrid contribution 1.106 -0.243 -0.776 1.373 sum -10.112 4.460 13.828 17.702 Atomic orbital electron populations 1.21587 0.96854 0.98382 1.00296 1.21758 0.93673 0.99487 1.00805 1.18229 0.93271 0.88882 0.81758 0.98837 1.21593 0.91711 1.38647 1.06677 0.91127 1.25771 1.03217 0.94447 0.95074 1.70053 1.37086 1.38328 1.09986 0.85457 0.79273 0.78439 0.77507 1.18927 1.21315 1.19624 1.46286 1.16035 1.56654 1.17255 1.21296 0.81418 0.78583 0.90727 1.90656 1.51936 1.60635 1.42496 1.21833 0.97464 1.02495 0.94836 1.20007 0.91416 0.93838 0.99826 0.91867 1.21575 0.97501 0.99413 0.96047 1.21730 0.96528 1.00610 1.01714 1.19797 0.95956 0.96460 0.93957 1.21200 0.99970 0.94441 0.99060 1.21377 0.96532 0.97993 0.98765 1.21327 1.00301 0.99494 0.94473 1.21305 0.99937 0.95003 0.99295 1.21042 0.96577 0.98057 0.97362 0.93216 0.96074 0.94687 0.91446 0.94505 0.92735 0.76500 0.87237 0.86604 0.90381 0.90103 0.93512 0.93760 0.91315 0.84369 0.84238 0.84797 0.86003 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.33 8.51 71.98 0.61 -4.71 16 2 C -0.12 -5.96 5.45 30.60 0.17 -5.80 16 3 C 0.28 14.56 2.24 44.25 0.10 14.66 16 4 H -0.01 -0.39 7.58 -2.39 -0.02 -0.40 16 5 C -0.55 -29.15 8.73 25.60 0.22 -28.92 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.01 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -53.15 11.28 21.45 0.24 -52.90 16 9 Si 0.97 42.30 29.54 68.60 2.03 44.33 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.71 -28.90 5.02 -446.08 -2.24 -31.14 16 14 C 0.49 18.50 6.09 87.66 0.53 19.03 16 15 O -0.58 -26.23 11.62 -3.05 -0.04 -26.27 16 16 C -0.13 -3.15 5.07 29.85 0.15 -3.00 16 17 C -0.03 -0.78 1.68 -11.54 -0.02 -0.80 16 18 H 0.06 1.85 7.56 -2.39 -0.02 1.83 16 19 C -0.11 -1.86 5.30 30.59 0.16 -1.70 16 20 C -0.15 -2.62 9.64 71.98 0.69 -1.93 16 21 C -0.06 -1.69 2.97 -19.87 -0.06 -1.75 16 22 C -0.13 -3.11 8.58 22.27 0.19 -2.92 16 23 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 24 C -0.14 -3.47 10.05 22.27 0.22 -3.24 16 25 C -0.14 -3.92 10.05 22.27 0.22 -3.69 16 26 C -0.11 -3.49 8.83 22.27 0.20 -3.29 16 27 H 0.05 2.24 5.64 -2.39 -0.01 2.22 16 28 H 0.02 1.05 7.85 -2.38 -0.02 1.04 16 29 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 3.82 5.94 -2.39 -0.01 3.81 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.40 13.71 8.54 -92.72 -0.79 12.92 16 34 H 0.11 2.22 7.18 -2.39 -0.02 2.21 16 35 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.08 1.15 7.23 -2.38 -0.02 1.13 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.04 0.88 7.58 -2.38 -0.02 0.86 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.14 2.59 7.04 -2.91 -0.02 2.57 16 42 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.12 3.12 8.06 -2.91 -0.02 3.09 16 45 H 0.10 3.36 7.95 -2.91 -0.02 3.34 16 Total: -1.00 -67.24 356.47 4.24 -63.01 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.17 Total: 32.59 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 4.07 Total: -29.62 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -2.00 Total: -84.04 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.04 Total: -26.27 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -67.24 4.24 -63.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.474 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds