Wall clock time and date at job start Tue Mar 31 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.47006 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47006 * 179.97438 * 17 16 14 19 19 C 1.38253 * 120.00020 * 264.72968 * 18 17 16 20 20 C 1.38215 * 120.00115 * 179.74405 * 19 18 17 21 21 C 1.38254 * 119.99735 * 0.52901 * 20 19 18 22 22 C 1.50697 * 120.00033 * 179.76876 * 21 20 19 23 23 C 1.38214 * 120.00144 * 359.74516 * 21 20 19 24 24 C 1.38212 * 119.99803 * 84.99682 * 18 17 16 25 25 C 1.50699 * 120.00337 * 0.02562 * 24 18 17 26 26 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 27 27 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 30 30 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 31 31 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 33 33 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 34 34 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 35 35 H 1.09002 * 109.47281 * 299.99730 * 17 16 14 36 36 H 1.08997 * 109.47550 * 59.99777 * 17 16 14 37 37 H 1.08003 * 120.00030 * 359.97438 * 19 18 17 38 38 H 1.07997 * 120.00095 * 180.29440 * 20 19 18 39 39 H 1.08995 * 109.47619 * 269.97752 * 22 21 20 40 40 H 1.09003 * 109.47087 * 29.97788 * 22 21 20 41 41 H 1.09006 * 109.47385 * 149.96989 * 22 21 20 42 42 H 1.07998 * 119.99964 * 180.02562 * 23 21 20 43 43 H 1.08999 * 109.46978 * 89.99832 * 25 24 18 44 44 H 1.08997 * 109.47244 * 209.99450 * 25 24 18 45 45 H 1.09000 * 109.46843 * 329.99719 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3826 3.8941 -2.5214 18 6 -1.7809 4.5688 -3.8087 19 6 -1.6199 5.9344 -3.9520 20 6 -1.9802 6.5525 -5.1346 21 6 -2.5118 5.8067 -6.1702 22 6 -2.9095 6.4813 -7.4578 23 6 -2.6780 4.4423 -6.0250 24 6 -2.3122 3.8232 -4.8441 25 6 -2.4938 2.3356 -4.6855 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0608 2.9500 32 1 2.2720 2.1231 -1.9978 33 1 0.7280 4.1540 -2.8668 34 1 0.0680 2.6143 -3.4687 35 1 -2.0738 3.0783 -2.3094 36 1 -1.4145 4.6181 -1.7072 37 1 -1.2091 6.5178 -3.1412 38 1 -1.8500 7.6185 -5.2482 39 1 -3.9503 6.7988 -7.3952 40 1 -2.2737 7.3510 -7.6238 41 1 -2.7920 5.7821 -8.2857 42 1 -3.0929 3.8597 -6.8341 43 1 -3.4825 2.1321 -4.2741 44 1 -2.3984 1.8522 -5.6578 45 1 -1.7320 1.9466 -4.0100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183953962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:44 Heat of formation + Delta-G solvation = -47.443020 kcal Electronic energy + Delta-G solvation = -22683.066504 eV Core-core repulsion = 19470.997833 eV Total energy + Delta-G solvation = -3212.068671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91658 -38.87501 -35.34318 -34.56867 -32.49258 -32.33022 -31.39323 -30.57210 -27.55434 -27.20918 -26.44677 -23.67473 -22.72703 -22.05998 -20.27059 -19.83719 -19.24709 -17.11788 -16.18484 -16.06065 -15.33658 -15.24866 -14.88302 -14.73593 -14.35902 -14.05868 -13.50186 -13.29694 -13.19544 -13.06879 -12.77173 -12.60956 -12.45723 -12.12448 -12.08138 -11.84039 -11.46615 -11.38867 -11.24191 -11.11030 -10.94780 -10.84553 -10.81651 -10.66464 -10.29568 -10.14091 -9.61136 -9.03299 -8.95398 -8.79658 -8.49406 -8.39857 -7.77193 -6.11458 -4.20569 1.26735 1.33449 3.23709 3.31704 3.34305 3.48172 3.62353 4.16725 4.40202 4.65943 4.72227 4.87464 4.97734 5.08036 5.19843 5.22348 5.29536 5.34649 5.36620 5.46925 5.56544 5.59740 5.63339 5.68802 5.82810 5.91510 5.99068 6.05955 6.20152 6.37071 6.40806 6.43288 6.47697 6.50241 6.68161 6.69518 6.98541 7.05799 7.22094 7.39595 7.50562 7.64182 7.76171 7.92800 8.20330 8.72315 8.80445 9.20063 9.47352 10.93887 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027772 B = 0.003031 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.973552 B = 9236.169645 C = 9720.777114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.711 5.711 14 C 0.499 3.501 15 O -0.551 6.551 16 C -0.137 4.137 17 C -0.064 4.064 18 C -0.082 4.082 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.094 4.094 22 C -0.112 4.112 23 C -0.121 4.121 24 C -0.077 4.077 25 C -0.121 4.121 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.021 0.979 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.263 0.737 32 H 0.388 0.612 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.118 0.882 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 8.227 -16.778 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.430 6.430 16 C -0.177 4.177 17 C -0.102 4.102 18 C -0.082 4.082 19 C -0.127 4.127 20 C -0.144 4.144 21 C -0.094 4.094 22 C -0.169 4.169 23 C -0.139 4.139 24 C -0.077 4.077 25 C -0.178 4.178 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.220 0.780 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.136 0.864 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.009 8.088 -15.901 20.964 hybrid contribution 1.373 0.004 -0.270 1.399 sum -9.637 8.093 -16.172 20.491 Atomic orbital electron populations 1.21834 0.98357 0.97932 1.01238 1.21927 0.92614 0.99888 1.02184 1.18764 0.94115 0.89165 0.81211 0.93388 1.21287 0.90835 1.38792 1.06196 0.92102 1.24895 0.98564 0.94870 0.95424 1.69913 1.34982 1.37754 1.09348 0.86416 0.84967 0.77755 0.78099 1.19758 1.20902 1.20896 1.46514 1.14787 1.56079 1.18438 1.20394 0.82706 0.79330 0.89165 1.90662 1.51454 1.60092 1.40800 1.21683 0.97639 1.01154 0.97258 1.20318 0.95641 1.00623 0.93593 1.19876 0.98890 0.93617 0.95806 1.21080 0.99797 0.94220 0.97614 1.20971 1.00519 0.99480 0.93433 1.19854 0.99524 0.93881 0.96125 1.20762 1.01457 1.00343 0.94317 1.20868 1.01581 0.94045 0.97414 1.19799 0.98359 0.96106 0.93476 1.20896 1.02818 0.91434 1.02606 0.93183 0.94254 0.95958 0.95124 0.88382 0.92658 0.78048 0.89545 0.89619 0.90096 0.90329 0.85963 0.86379 0.91426 0.91715 0.91745 0.86378 0.91087 0.91715 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.59 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.77 11.30 55.43 0.63 -24.14 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.71 -14.51 5.02 -54.93 -0.28 -14.79 16 14 C 0.50 9.55 6.40 -10.98 -0.07 9.48 16 15 O -0.55 -12.46 13.12 5.56 0.07 -12.38 16 16 C -0.14 -1.93 5.49 -27.88 -0.15 -2.08 16 17 C -0.06 -0.87 3.94 -27.88 -0.11 -0.98 16 18 C -0.08 -1.00 5.13 -104.62 -0.54 -1.54 16 19 C -0.11 -1.25 9.68 -39.58 -0.38 -1.63 16 20 C -0.13 -1.30 9.70 -39.58 -0.38 -1.69 16 21 C -0.09 -0.94 5.88 -104.63 -0.62 -1.55 16 22 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 23 C -0.12 -1.26 9.36 -39.58 -0.37 -1.63 16 24 C -0.08 -0.89 5.88 -104.62 -0.62 -1.50 16 25 C -0.12 -1.23 9.22 36.00 0.33 -0.90 16 26 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 27 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.34 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 6.92 8.54 -40.82 -0.35 6.57 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.08 6.91 -51.93 -0.36 0.72 16 35 H 0.08 1.16 6.95 -51.93 -0.36 0.80 16 36 H 0.08 1.13 8.01 -51.93 -0.42 0.72 16 37 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 41 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.07 0.82 5.43 -51.93 -0.28 0.54 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -30.02 359.24 -9.46 -39.48 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.35 Total: 7.33 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.92 Total: -16.52 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.35 Total: -38.93 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.02 -9.46 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183953962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.958 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds