Wall clock time and date at job start Tue Mar 31 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.47006 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47006 * 179.97438 * 17 16 14 19 19 C 1.38253 * 120.00020 * 264.72968 * 18 17 16 20 20 C 1.38215 * 120.00115 * 179.74405 * 19 18 17 21 21 C 1.38254 * 119.99735 * 0.52901 * 20 19 18 22 22 C 1.50697 * 120.00033 * 179.76876 * 21 20 19 23 23 C 1.38214 * 120.00144 * 359.74516 * 21 20 19 24 24 C 1.38212 * 119.99803 * 84.99682 * 18 17 16 25 25 C 1.50699 * 120.00337 * 0.02562 * 24 18 17 26 26 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 27 27 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 30 30 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 31 31 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 33 33 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 34 34 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 35 35 H 1.09002 * 109.47281 * 299.99730 * 17 16 14 36 36 H 1.08997 * 109.47550 * 59.99777 * 17 16 14 37 37 H 1.08003 * 120.00030 * 359.97438 * 19 18 17 38 38 H 1.07997 * 120.00095 * 180.29440 * 20 19 18 39 39 H 1.08995 * 109.47619 * 269.97752 * 22 21 20 40 40 H 1.09003 * 109.47087 * 29.97788 * 22 21 20 41 41 H 1.09006 * 109.47385 * 149.96989 * 22 21 20 42 42 H 1.07998 * 119.99964 * 180.02562 * 23 21 20 43 43 H 1.08999 * 109.46978 * 89.99832 * 25 24 18 44 44 H 1.08997 * 109.47244 * 209.99450 * 25 24 18 45 45 H 1.09000 * 109.46843 * 329.99719 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3826 3.8941 -2.5214 18 6 -1.7809 4.5688 -3.8087 19 6 -1.6199 5.9344 -3.9520 20 6 -1.9802 6.5525 -5.1346 21 6 -2.5118 5.8067 -6.1702 22 6 -2.9095 6.4813 -7.4578 23 6 -2.6780 4.4423 -6.0250 24 6 -2.3122 3.8232 -4.8441 25 6 -2.4938 2.3356 -4.6855 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0608 2.9500 32 1 2.2720 2.1231 -1.9978 33 1 0.7280 4.1540 -2.8668 34 1 0.0680 2.6143 -3.4687 35 1 -2.0738 3.0783 -2.3094 36 1 -1.4145 4.6181 -1.7072 37 1 -1.2091 6.5178 -3.1412 38 1 -1.8500 7.6185 -5.2482 39 1 -3.9503 6.7988 -7.3952 40 1 -2.2737 7.3510 -7.6238 41 1 -2.7920 5.7821 -8.2857 42 1 -3.0929 3.8597 -6.8341 43 1 -3.4825 2.1321 -4.2741 44 1 -2.3984 1.8522 -5.6578 45 1 -1.7320 1.9466 -4.0100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183953962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:44 Heat of formation + Delta-G solvation = -63.144754 kcal Electronic energy + Delta-G solvation = -22683.747383 eV Core-core repulsion = 19470.997833 eV Total energy + Delta-G solvation = -3212.749550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.96943 -40.28204 -37.04090 -35.66544 -34.26809 -33.37436 -32.87195 -31.85661 -29.13726 -28.04584 -27.66601 -25.19234 -24.20888 -22.91627 -21.88382 -21.02585 -20.76742 -18.86886 -17.56532 -17.21915 -17.05710 -16.42569 -16.23272 -16.04073 -15.59479 -15.08096 -14.70751 -14.60396 -14.52863 -14.01225 -13.94443 -13.73180 -13.45552 -13.45011 -13.19498 -13.13966 -13.05500 -12.85580 -12.78160 -12.69708 -12.22217 -12.15410 -12.09591 -11.99295 -11.70156 -11.63756 -11.56318 -11.02686 -10.63111 -10.47851 -9.60885 -9.57559 -9.25615 -8.15849 -6.32938 0.44330 0.52697 1.43398 1.44718 1.56397 1.92997 2.37103 2.67570 2.88862 3.13594 3.82643 3.89724 4.06251 4.09978 4.11594 4.20393 4.37898 4.50345 4.51420 4.54580 4.59102 4.65583 4.73231 4.80239 4.81015 4.85602 4.88436 4.99330 5.02818 5.07535 5.08619 5.21097 5.28138 5.34764 5.43344 5.45965 5.57862 5.60956 5.66795 5.74467 5.81771 5.82858 5.95816 6.18819 6.19628 6.76389 7.05416 7.34883 7.65616 8.89618 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027772 B = 0.003031 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.973552 B = 9236.169645 C = 9720.777114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.004 1.004 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.709 5.709 14 C 0.496 3.504 15 O -0.589 6.589 16 C -0.121 4.121 17 C -0.055 4.055 18 C -0.098 4.098 19 C -0.120 4.120 20 C -0.133 4.133 21 C -0.096 4.096 22 C -0.111 4.111 23 C -0.128 4.128 24 C -0.086 4.086 25 C -0.120 4.120 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.137 0.863 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.137 0.863 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.121 8.835 -19.624 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.470 6.470 16 C -0.160 4.160 17 C -0.093 4.093 18 C -0.099 4.099 19 C -0.138 4.138 20 C -0.151 4.151 21 C -0.096 4.096 22 C -0.168 4.168 23 C -0.146 4.146 24 C -0.086 4.086 25 C -0.177 4.177 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.237 0.763 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.155 0.845 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.634 8.711 -18.790 23.282 hybrid contribution 1.181 -0.134 0.597 1.330 sum -9.453 8.577 -18.193 22.225 Atomic orbital electron populations 1.21671 0.96900 0.99070 1.00321 1.21774 0.93827 0.99207 1.01170 1.18342 0.93512 0.89188 0.81624 0.98579 1.21628 0.91586 1.38672 1.06572 0.91146 1.25778 1.03270 0.94465 0.95081 1.70064 1.36946 1.38512 1.09894 0.85337 0.79238 0.77815 0.78181 1.18449 1.21069 1.20456 1.46308 1.15819 1.56201 1.17432 1.21257 0.81576 0.78401 0.90406 1.90651 1.52411 1.61268 1.42701 1.21621 0.98243 1.01662 0.94522 1.20161 0.95031 0.99891 0.94212 1.19759 1.00648 0.94090 0.95359 1.21233 1.00115 0.94078 0.98397 1.21240 1.00235 1.00565 0.93078 1.20247 0.98366 0.93939 0.97049 1.20815 1.02118 1.00735 0.93094 1.21141 1.01382 0.94578 0.97510 1.19979 0.98325 0.96655 0.93680 1.20903 1.02535 0.90933 1.03288 0.95717 0.93486 0.93673 0.94085 0.91217 0.92659 0.76280 0.87708 0.87355 0.91276 0.91889 0.85643 0.84544 0.90507 0.90773 0.90729 0.84504 0.90910 0.90033 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.51 71.98 0.61 -4.91 16 2 C -0.12 -5.98 5.45 30.60 0.17 -5.81 16 3 C 0.28 14.23 2.24 44.25 0.10 14.33 16 4 H 0.00 -0.23 7.58 -2.39 -0.02 -0.24 16 5 C -0.55 -28.99 8.73 25.60 0.22 -28.76 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -52.72 11.30 21.45 0.24 -52.48 16 9 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.71 -28.93 5.02 -446.09 -2.24 -31.17 16 14 C 0.50 19.05 6.40 87.66 0.56 19.61 16 15 O -0.59 -27.49 13.12 -3.02 -0.04 -27.53 16 16 C -0.12 -3.27 5.49 29.85 0.16 -3.11 16 17 C -0.06 -1.49 3.94 29.85 0.12 -1.37 16 18 C -0.10 -2.32 5.13 -19.87 -0.10 -2.42 16 19 C -0.12 -2.62 9.68 22.27 0.22 -2.40 16 20 C -0.13 -2.49 9.70 22.27 0.22 -2.27 16 21 C -0.10 -1.68 5.88 -19.87 -0.12 -1.79 16 22 C -0.11 -1.26 10.01 71.23 0.71 -0.54 16 23 C -0.13 -2.37 9.36 22.27 0.21 -2.16 16 24 C -0.09 -1.84 5.88 -19.87 -0.12 -1.95 16 25 C -0.12 -2.26 9.22 71.24 0.66 -1.60 16 26 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 27 H 0.05 2.02 5.64 -2.39 -0.01 2.00 16 28 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 3.88 5.95 -2.39 -0.01 3.86 16 31 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.40 13.92 8.54 -92.71 -0.79 13.13 16 33 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.11 2.50 6.91 -2.39 -0.02 2.48 16 35 H 0.07 2.01 6.95 -2.39 -0.02 1.99 16 36 H 0.06 1.87 8.01 -2.39 -0.02 1.85 16 37 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 41 H 0.07 0.71 8.09 -2.38 -0.02 0.69 16 42 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.22 8.09 -2.39 -0.02 1.21 16 45 H 0.06 1.32 5.43 -2.39 -0.01 1.31 16 Total: -1.00 -66.27 359.24 4.24 -62.03 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.18 Total: 28.84 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 4.07 Total: -23.97 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -2.00 Total: -83.65 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.04 Total: -27.53 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -66.27 4.24 -62.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183953962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.114 kcal (2) G-P(sol) polarization free energy of solvation -66.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds