Wall clock time and date at job start Tue Mar 31 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47173 * 180.02562 * 17 16 14 19 19 C 1.38260 * 119.99812 * 264.72595 * 18 17 16 20 20 C 1.38213 * 119.99958 * 179.74569 * 19 18 17 21 21 C 1.38254 * 119.99812 * 0.52877 * 20 19 18 22 22 C 1.50700 * 119.99836 * 179.77250 * 21 20 19 23 23 C 1.38212 * 120.00333 * 359.74578 * 21 20 19 24 24 C 1.38209 * 120.00291 * 84.99971 * 18 17 16 25 25 C 1.50704 * 119.99924 * 0.02562 * 24 18 17 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 33 33 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 34 34 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 35 35 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 36 36 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 37 37 H 1.08009 * 120.00018 * 359.97438 * 19 18 17 38 38 H 1.08001 * 120.00156 * 180.29895 * 20 19 18 39 39 H 1.08999 * 109.46950 * 269.97772 * 22 21 20 40 40 H 1.08996 * 109.47286 * 29.97180 * 22 21 20 41 41 H 1.08998 * 109.47091 * 149.97425 * 22 21 20 42 42 H 1.07993 * 120.00133 * 180.02562 * 23 21 20 43 43 H 1.08988 * 109.47121 * 90.00091 * 25 24 18 44 44 H 1.09004 * 109.47167 * 210.00310 * 25 24 18 45 45 H 1.09000 * 109.46756 * 329.99892 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 6 -1.7555 4.5595 3.8415 19 6 -2.4727 3.8602 4.7945 20 6 -2.8259 4.4737 5.9816 21 6 -2.4714 5.7901 6.2115 22 6 -2.8609 6.4607 7.5036 23 6 -1.7593 6.4910 5.2565 24 6 -1.4011 5.8754 4.0714 25 6 -0.6251 6.6398 3.0299 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0905 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -1.4015 4.6154 1.7380 36 1 -2.0586 3.0742 2.3391 37 1 -2.7539 2.8333 4.6128 38 1 -3.3820 3.9260 6.7280 39 1 -3.8356 6.9346 7.3876 40 1 -2.9111 5.7165 8.2984 41 1 -2.1178 7.2159 7.7594 42 1 -1.4820 7.5191 5.4363 43 1 -1.3190 7.1359 2.3514 44 1 0.0014 7.3860 3.5185 45 1 0.0035 5.9502 2.4665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183953980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:46 Heat of formation + Delta-G solvation = -47.446560 kcal Electronic energy + Delta-G solvation = -22748.702734 eV Core-core repulsion = 19536.633909 eV Total energy + Delta-G solvation = -3212.068825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98943 -39.06920 -35.55625 -34.68089 -32.55688 -32.40520 -31.71358 -30.87295 -27.71025 -27.27518 -26.60218 -23.59740 -22.30009 -22.11351 -20.51530 -19.94433 -19.49143 -17.78467 -16.51425 -16.22944 -15.54764 -15.48301 -15.00629 -14.81322 -14.25051 -13.95169 -13.47677 -13.37478 -13.27374 -13.13361 -12.90309 -12.64791 -12.51386 -12.33746 -12.22339 -12.12927 -12.04100 -11.71515 -11.42543 -11.18818 -10.98185 -10.86574 -10.74597 -10.67546 -10.45727 -9.80487 -9.69621 -9.16337 -8.88285 -8.84746 -8.51677 -8.46754 -8.05536 -6.55605 -4.23358 1.21613 1.28605 3.29312 3.36194 3.45349 3.56772 3.59369 4.04982 4.40957 4.61542 4.66958 4.81932 4.90037 5.02603 5.16446 5.19270 5.20351 5.27201 5.33261 5.41218 5.48770 5.55850 5.57794 5.63157 5.74713 5.82393 5.90143 6.00386 6.03140 6.07121 6.14356 6.24186 6.29112 6.37924 6.45748 6.63454 6.69675 6.75391 6.91798 6.93525 7.01901 7.34868 7.41873 7.65834 8.22787 8.50572 8.70957 9.02381 9.47269 10.84781 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030618 B = 0.003133 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.285474 B = 8935.997901 C = 9244.508034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.241 3.759 4 H 0.048 0.952 5 C -0.609 4.609 6 H 0.061 0.939 7 C 0.035 3.965 8 N -0.906 5.906 9 Si 1.049 2.951 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.288 1.288 13 N -0.703 5.703 14 C 0.500 3.500 15 O -0.552 6.552 16 C -0.137 4.137 17 C -0.064 4.064 18 C -0.083 4.083 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.093 4.093 22 C -0.112 4.112 23 C -0.121 4.121 24 C -0.076 4.076 25 C -0.122 4.122 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.268 0.732 32 H 0.392 0.608 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.118 9.231 15.129 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.137 3.863 4 H 0.066 0.934 5 C -0.647 4.647 6 H 0.079 0.921 7 C -0.171 4.171 8 N -0.539 5.539 9 Si 0.878 3.122 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.214 1.214 13 N -0.351 5.351 14 C 0.285 3.715 15 O -0.431 6.431 16 C -0.177 4.177 17 C -0.102 4.102 18 C -0.083 4.083 19 C -0.127 4.127 20 C -0.144 4.144 21 C -0.093 4.093 22 C -0.169 4.169 23 C -0.139 4.139 24 C -0.077 4.077 25 C -0.178 4.178 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.225 0.775 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.137 0.863 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.573 8.563 12.917 21.970 hybrid contribution 0.390 0.550 2.100 2.206 sum -15.183 9.114 15.017 23.218 Atomic orbital electron populations 1.21891 0.97158 0.98910 1.02179 1.22248 0.94021 0.99994 1.01277 1.19219 0.95797 0.88501 0.82787 0.93429 1.22178 0.89824 1.48018 1.04712 0.92072 1.25703 0.97498 0.93608 1.00249 1.70832 1.04437 1.42587 1.36074 0.83940 0.75326 0.77180 0.75782 1.20722 1.19862 1.21422 1.46268 1.14803 1.56050 1.17974 1.20478 0.82516 0.79161 0.89310 1.90655 1.51078 1.60097 1.41291 1.21677 0.97842 1.01199 0.96985 1.20317 0.95541 1.00422 0.93874 1.19849 0.98331 0.93676 0.96468 1.21067 0.98341 0.99787 0.93514 1.20972 1.01239 0.94634 0.97579 1.19864 0.98585 0.94456 0.96372 1.20766 1.01559 1.00388 0.94202 1.20879 0.99878 0.99562 0.93573 1.19804 0.98403 0.93936 0.95509 1.20904 0.99518 0.99962 0.97435 0.93099 0.92901 0.95048 0.92314 0.92814 0.92168 0.77550 0.89465 0.89367 0.90034 0.90343 0.86014 0.86355 0.91391 0.91692 0.91706 0.86320 0.91046 0.91643 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.52 37.16 0.32 -2.57 16 2 C -0.14 -3.04 5.20 -26.73 -0.14 -3.18 16 3 C 0.24 5.72 1.81 -69.08 -0.13 5.60 16 4 H 0.05 1.25 6.07 -51.93 -0.32 0.94 16 5 C -0.61 -16.48 9.09 -34.44 -0.31 -16.79 16 6 H 0.06 1.73 7.95 -52.48 -0.42 1.31 16 7 C 0.04 0.99 5.42 -17.82 -0.10 0.90 16 8 N -0.91 -27.20 13.70 55.43 0.76 -26.44 16 9 Si 1.05 25.57 25.39 -169.99 -4.32 21.25 16 10 H -0.28 -6.48 6.73 56.52 0.38 -6.10 16 11 H -0.27 -6.45 6.38 56.52 0.36 -6.09 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.70 -13.92 5.03 -54.93 -0.28 -14.20 16 14 C 0.50 9.11 6.42 -10.98 -0.07 9.04 16 15 O -0.55 -11.74 13.12 5.56 0.07 -11.66 16 16 C -0.14 -1.84 5.49 -27.88 -0.15 -1.99 16 17 C -0.06 -0.82 3.94 -27.88 -0.11 -0.93 16 18 C -0.08 -0.98 5.13 -104.63 -0.54 -1.52 16 19 C -0.11 -1.19 9.68 -39.58 -0.38 -1.57 16 20 C -0.13 -1.26 9.70 -39.58 -0.38 -1.64 16 21 C -0.09 -0.90 5.88 -104.63 -0.62 -1.52 16 22 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 23 C -0.12 -1.23 9.36 -39.58 -0.37 -1.60 16 24 C -0.08 -0.85 5.88 -104.62 -0.62 -1.47 16 25 C -0.12 -1.22 9.22 36.01 0.33 -0.89 16 26 H 0.05 1.00 5.64 -51.93 -0.29 0.71 16 27 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.36 4.43 -51.93 -0.23 1.13 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.27 7.96 8.72 -40.82 -0.36 7.61 16 32 H 0.39 6.96 8.53 -40.82 -0.35 6.61 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.09 6.91 -51.93 -0.36 0.73 16 35 H 0.08 1.12 6.95 -51.93 -0.36 0.76 16 36 H 0.08 1.06 8.01 -51.93 -0.42 0.64 16 37 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 41 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.07 0.67 8.14 -51.94 -0.42 0.25 16 44 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 45 H 0.07 0.81 5.43 -51.93 -0.28 0.53 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -31.09 353.84 -8.62 -39.71 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.28 Total: 6.59 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -2.90 Total: -20.58 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.48 Total: -40.64 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -4.32 Total: 21.25 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.09 -8.62 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183953980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.736 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds