Wall clock time and date at job start Tue Mar 31 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47173 * 180.02562 * 17 16 14 19 19 C 1.38260 * 119.99812 * 264.72595 * 18 17 16 20 20 C 1.38213 * 119.99958 * 179.74569 * 19 18 17 21 21 C 1.38254 * 119.99812 * 0.52877 * 20 19 18 22 22 C 1.50700 * 119.99836 * 179.77250 * 21 20 19 23 23 C 1.38212 * 120.00333 * 359.74578 * 21 20 19 24 24 C 1.38209 * 120.00291 * 84.99971 * 18 17 16 25 25 C 1.50704 * 119.99924 * 0.02562 * 24 18 17 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 33 33 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 34 34 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 35 35 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 36 36 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 37 37 H 1.08009 * 120.00018 * 359.97438 * 19 18 17 38 38 H 1.08001 * 120.00156 * 180.29895 * 20 19 18 39 39 H 1.08999 * 109.46950 * 269.97772 * 22 21 20 40 40 H 1.08996 * 109.47286 * 29.97180 * 22 21 20 41 41 H 1.08998 * 109.47091 * 149.97425 * 22 21 20 42 42 H 1.07993 * 120.00133 * 180.02562 * 23 21 20 43 43 H 1.08988 * 109.47121 * 90.00091 * 25 24 18 44 44 H 1.09004 * 109.47167 * 210.00310 * 25 24 18 45 45 H 1.09000 * 109.46756 * 329.99892 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 6 -1.7555 4.5595 3.8415 19 6 -2.4727 3.8602 4.7945 20 6 -2.8259 4.4737 5.9816 21 6 -2.4714 5.7901 6.2115 22 6 -2.8609 6.4607 7.5036 23 6 -1.7593 6.4910 5.2565 24 6 -1.4011 5.8754 4.0714 25 6 -0.6251 6.6398 3.0299 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0905 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -1.4015 4.6154 1.7380 36 1 -2.0586 3.0742 2.3391 37 1 -2.7539 2.8333 4.6128 38 1 -3.3820 3.9260 6.7280 39 1 -3.8356 6.9346 7.3876 40 1 -2.9111 5.7165 8.2984 41 1 -2.1178 7.2159 7.7594 42 1 -1.4820 7.5191 5.4363 43 1 -1.3190 7.1359 2.3514 44 1 0.0014 7.3860 3.5185 45 1 0.0035 5.9502 2.4665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183953980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:46 Heat of formation + Delta-G solvation = -65.130233 kcal Electronic energy + Delta-G solvation = -22749.469556 eV Core-core repulsion = 19536.633909 eV Total energy + Delta-G solvation = -3212.835646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04750 -40.35623 -37.21299 -35.69852 -34.45657 -33.48773 -33.13152 -31.92634 -29.31362 -28.08082 -27.71446 -24.76481 -24.04823 -22.95171 -22.07546 -21.17170 -20.80186 -19.76735 -17.92089 -17.31577 -17.08238 -16.48651 -16.30242 -15.69206 -15.59048 -15.09084 -14.87207 -14.66784 -14.45927 -14.39480 -14.03313 -13.95137 -13.92111 -13.55995 -13.43282 -13.20188 -13.09631 -12.82786 -12.73651 -12.48275 -12.32214 -12.21261 -12.08373 -11.73188 -11.70915 -11.66098 -11.49140 -10.98166 -10.67070 -10.66017 -9.77233 -9.62760 -9.27902 -8.78912 -6.47722 0.42371 0.50936 1.39918 1.49587 1.67272 1.82877 2.38544 2.51772 2.84436 3.01910 3.76112 3.87550 4.02981 4.06695 4.08936 4.17768 4.29366 4.32174 4.38003 4.46053 4.51216 4.54487 4.64330 4.71070 4.77461 4.82762 4.86214 4.88400 4.96932 5.00608 5.04442 5.06966 5.18413 5.19253 5.29835 5.33122 5.40688 5.53863 5.58869 5.66420 5.68473 5.72844 5.80548 5.99496 6.17477 6.51345 6.89456 7.27793 7.50127 8.60073 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030618 B = 0.003133 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.285474 B = 8935.997901 C = 9244.508034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 C 0.245 3.755 4 H 0.024 0.976 5 C -0.604 4.604 6 H 0.040 0.960 7 C -0.011 4.011 8 N -0.936 5.936 9 Si 1.080 2.920 10 H -0.258 1.258 11 H -0.266 1.266 12 H -0.287 1.287 13 N -0.706 5.706 14 C 0.500 3.500 15 O -0.581 6.581 16 C -0.123 4.123 17 C -0.055 4.055 18 C -0.099 4.099 19 C -0.118 4.118 20 C -0.133 4.133 21 C -0.096 4.096 22 C -0.112 4.112 23 C -0.130 4.130 24 C -0.087 4.087 25 C -0.121 4.121 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.257 0.743 32 H 0.402 0.598 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.135 0.865 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.950 9.436 16.804 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C 0.140 3.860 4 H 0.042 0.958 5 C -0.642 4.642 6 H 0.058 0.942 7 C -0.210 4.210 8 N -0.572 5.572 9 Si 0.903 3.097 10 H -0.183 1.183 11 H -0.191 1.191 12 H -0.213 1.213 13 N -0.355 5.355 14 C 0.288 3.712 15 O -0.463 6.463 16 C -0.162 4.162 17 C -0.092 4.092 18 C -0.099 4.099 19 C -0.136 4.136 20 C -0.151 4.151 21 C -0.096 4.096 22 C -0.168 4.168 23 C -0.148 4.148 24 C -0.087 4.087 25 C -0.177 4.177 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.236 0.764 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.153 0.847 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.413 8.775 14.633 24.379 hybrid contribution 0.941 0.576 1.683 2.012 sum -16.472 9.351 16.316 24.999 Atomic orbital electron populations 1.21771 0.95221 1.00506 1.01603 1.22153 0.95679 0.98389 1.01133 1.18882 0.93331 0.89785 0.83957 0.95822 1.22385 0.91710 1.46424 1.03717 0.94200 1.26841 0.97701 0.93668 1.02817 1.70931 1.05388 1.44854 1.36034 0.83540 0.74359 0.78486 0.73288 1.18289 1.19082 1.21335 1.46146 1.15915 1.56454 1.17006 1.21226 0.81307 0.78174 0.90512 1.90642 1.51769 1.60993 1.42847 1.21631 0.98488 1.01615 0.94506 1.20172 0.94846 0.99824 0.94403 1.19764 0.99781 0.94197 0.96167 1.21245 0.98248 1.00300 0.93780 1.21257 1.01199 0.95021 0.97644 1.20246 0.97634 0.94495 0.97227 1.20817 1.02211 1.00753 0.93025 1.21136 0.99910 1.00451 0.93308 1.19973 0.98686 0.93912 0.96172 1.20901 0.99524 0.99959 0.97334 0.92942 0.94217 0.92313 0.93185 0.92224 0.93339 0.76390 0.87378 0.87941 0.91355 0.91164 0.85253 0.84438 0.90473 0.90707 0.90873 0.84729 0.90812 0.90286 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.52 71.98 0.61 -4.49 16 2 C -0.13 -5.82 5.20 30.59 0.16 -5.66 16 3 C 0.25 11.61 1.81 44.24 0.08 11.69 16 4 H 0.02 1.25 6.07 -2.39 -0.01 1.24 16 5 C -0.60 -33.06 9.09 25.60 0.23 -32.83 16 6 H 0.04 2.30 7.95 -2.91 -0.02 2.28 16 7 C -0.01 -0.61 5.42 84.65 0.46 -0.15 16 8 N -0.94 -57.27 13.70 21.45 0.29 -56.98 16 9 Si 1.08 51.40 25.39 68.60 1.74 53.14 16 10 H -0.26 -11.26 6.73 99.48 0.67 -10.59 16 11 H -0.27 -12.24 6.38 99.48 0.63 -11.61 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 N -0.71 -27.53 5.03 -446.10 -2.24 -29.78 16 14 C 0.50 17.79 6.42 87.66 0.56 18.35 16 15 O -0.58 -24.50 13.12 -3.02 -0.04 -24.54 16 16 C -0.12 -3.12 5.49 29.85 0.16 -2.96 16 17 C -0.05 -1.37 3.94 29.85 0.12 -1.25 16 18 C -0.10 -2.21 5.13 -19.87 -0.10 -2.31 16 19 C -0.12 -2.37 9.68 22.27 0.22 -2.16 16 20 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 21 C -0.10 -1.63 5.88 -19.87 -0.12 -1.75 16 22 C -0.11 -1.23 10.01 71.24 0.71 -0.52 16 23 C -0.13 -2.39 9.36 22.27 0.21 -2.18 16 24 C -0.09 -1.83 5.88 -19.86 -0.12 -1.94 16 25 C -0.12 -2.30 9.22 71.24 0.66 -1.64 16 26 H 0.05 1.97 5.64 -2.39 -0.01 1.95 16 27 H 0.04 1.60 7.87 -2.38 -0.02 1.59 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 2.24 4.43 -2.39 -0.01 2.23 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.26 15.75 8.72 -92.71 -0.81 14.94 16 32 H 0.40 13.99 8.53 -92.71 -0.79 13.20 16 33 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.10 2.36 6.91 -2.39 -0.02 2.35 16 35 H 0.07 1.87 6.95 -2.38 -0.02 1.85 16 36 H 0.07 1.84 8.01 -2.39 -0.02 1.83 16 37 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 41 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 42 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.08 1.25 8.09 -2.38 -0.02 1.23 16 45 H 0.06 1.32 5.43 -2.39 -0.01 1.31 16 Total: -1.00 -66.95 353.84 3.86 -63.10 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.04 Total: 26.99 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 4.06 Total: -31.94 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -1.95 Total: -86.75 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.04 Total: -24.54 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 1.74 Total: 53.14 kcal Total: -66.95 3.86 -63.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183953980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.033 kcal (2) G-P(sol) polarization free energy of solvation -66.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds