Wall clock time and date at job start Tue Mar 31 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47107 * 2 1 4 4 H 1.09003 * 109.47304 * 55.00112 * 3 2 1 5 5 C 1.50699 * 109.47169 * 174.99965 * 3 2 1 6 6 H 1.07999 * 120.00474 * 119.99447 * 5 3 2 7 7 C 1.37879 * 119.99835 * 300.00398 * 5 3 2 8 8 N 1.31520 * 119.99879 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00193 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47398 * 90.00241 * 9 7 5 11 11 H 1.48505 * 109.47359 * 210.00406 * 9 7 5 12 12 H 1.48506 * 109.47140 * 330.00133 * 9 7 5 13 13 N 1.46493 * 109.47454 * 294.99786 * 3 2 1 14 14 C 1.34784 * 119.99899 * 84.99852 * 13 3 2 15 15 O 1.21284 * 119.99847 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99958 * 180.02562 * 14 13 3 17 17 C 1.52996 * 109.46822 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47203 * 180.02562 * 17 16 14 19 19 C 1.38234 * 119.99895 * 269.72772 * 18 17 16 20 20 C 1.38240 * 120.00062 * 180.32314 * 19 18 17 21 21 C 1.50700 * 120.00045 * 179.97438 * 20 19 18 22 22 C 1.38234 * 119.99686 * 359.92348 * 20 19 18 23 23 C 1.38234 * 120.00244 * 0.07174 * 22 20 19 24 24 C 1.50696 * 119.99789 * 179.97438 * 23 22 20 25 25 C 1.38230 * 119.99864 * 359.95693 * 23 22 20 26 26 H 1.09006 * 109.46920 * 299.99931 * 1 2 3 27 27 H 1.09004 * 109.47197 * 59.99839 * 1 2 3 28 28 H 1.09000 * 109.47381 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46557 * 240.00071 * 2 1 3 30 30 H 1.08998 * 109.46555 * 120.00401 * 2 1 3 31 31 H 0.97001 * 119.99795 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00664 * 265.00581 * 13 3 2 33 33 H 1.08994 * 109.46951 * 60.00069 * 16 14 13 34 34 H 1.09001 * 109.46926 * 300.00011 * 16 14 13 35 35 H 1.09003 * 109.47252 * 60.00179 * 17 16 14 36 36 H 1.09001 * 109.47630 * 300.00233 * 17 16 14 37 37 H 1.08001 * 120.00279 * 0.27436 * 19 18 17 38 38 H 1.09000 * 109.46827 * 269.92740 * 21 20 19 39 39 H 1.09003 * 109.47455 * 29.92447 * 21 20 19 40 40 H 1.08989 * 109.47334 * 149.93038 * 21 20 19 41 41 H 1.07999 * 119.99747 * 180.02562 * 22 20 19 42 42 H 1.09001 * 109.47242 * 269.97350 * 24 23 22 43 43 H 1.08999 * 109.47144 * 29.97997 * 24 23 22 44 44 H 1.09000 * 109.47061 * 149.97941 * 24 23 22 45 45 H 1.08000 * 120.00356 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4540 0.8803 1.3363 9 14 3.0963 0.1099 2.5706 10 1 2.8744 -1.3262 2.2645 11 1 3.7941 0.2358 3.8755 12 1 1.7881 0.8092 2.6394 13 7 1.6525 2.0974 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3393 2.6326 -0.4341 16 6 0.0363 3.3377 -2.6548 17 6 -1.3824 3.8946 -2.5210 18 6 -1.7815 4.5674 -3.8091 19 6 -1.5250 5.9130 -3.9943 20 6 -1.8972 6.5317 -5.1732 21 6 -1.6180 7.9989 -5.3749 22 6 -2.5244 5.8044 -6.1674 23 6 -2.7808 4.4587 -5.9822 24 6 -3.4651 3.6660 -7.0658 25 6 -2.4092 3.8402 -4.8031 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8770 0.4818 2.1129 32 1 2.2720 2.1231 -1.9978 33 1 0.0674 2.6130 -3.4684 34 1 0.7278 4.1530 -2.8678 35 1 -1.4130 4.6194 -1.7074 36 1 -2.0741 3.0796 -2.3077 37 1 -1.0346 6.4812 -3.2178 38 1 -2.4654 8.5827 -5.0154 39 1 -0.7226 8.2782 -4.8196 40 1 -1.4643 8.1970 -6.4356 41 1 -2.8147 6.2876 -7.0885 42 1 -4.5443 3.7049 -6.9181 43 1 -3.2159 4.0899 -8.0386 44 1 -3.1299 2.6296 -7.0245 45 1 -2.6099 2.7890 -4.6582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183970811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:48 Heat of formation + Delta-G solvation = -41.620580 kcal Electronic energy + Delta-G solvation = -22504.645750 eV Core-core repulsion = 19292.829558 eV Total energy + Delta-G solvation = -3211.816191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.87587 -39.09788 -35.53185 -34.27803 -33.67020 -32.37392 -31.61554 -30.14082 -27.69099 -27.32186 -26.82287 -24.66172 -22.60256 -20.92249 -20.86773 -20.08707 -19.50094 -17.26764 -16.42184 -16.05732 -15.88698 -15.63470 -15.01436 -14.50801 -14.29879 -14.10841 -13.59751 -13.42924 -13.30580 -13.08743 -12.96199 -12.80166 -12.74357 -12.32879 -12.26637 -12.09236 -11.83832 -11.72660 -11.35620 -11.23859 -11.10046 -10.93050 -10.87483 -10.77778 -10.59498 -9.91584 -9.55060 -9.22049 -9.10002 -8.74531 -8.66205 -8.62816 -8.02609 -6.20558 -4.22794 1.25693 1.25771 3.23470 3.30630 3.35729 3.41071 3.57104 4.04081 4.32175 4.60587 4.63513 4.73098 5.02426 5.12645 5.12928 5.15359 5.21149 5.23613 5.35292 5.40127 5.41400 5.43079 5.62263 5.62591 5.65685 5.79905 5.89290 5.98092 6.01021 6.03781 6.11822 6.19970 6.26577 6.44139 6.46121 6.61465 6.67138 6.71222 6.86685 6.93968 6.97385 7.29321 7.33801 7.54383 8.17808 8.56659 8.77363 8.99945 9.40825 10.91601 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.003050 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.645187 B = 9177.554534 C = 9630.765808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.703 5.703 14 C 0.501 3.499 15 O -0.553 6.553 16 C -0.135 4.135 17 C -0.064 4.064 18 C -0.067 4.067 19 C -0.123 4.123 20 C -0.083 4.083 21 C -0.114 4.114 22 C -0.129 4.129 23 C -0.083 4.083 24 C -0.114 4.114 25 C -0.123 4.123 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.267 0.733 32 H 0.394 0.606 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.117 0.883 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.567 8.347 -15.716 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.350 5.350 14 C 0.287 3.713 15 O -0.432 6.432 16 C -0.175 4.175 17 C -0.102 4.102 18 C -0.067 4.067 19 C -0.141 4.141 20 C -0.083 4.083 21 C -0.171 4.171 22 C -0.147 4.147 23 C -0.083 4.083 24 C -0.170 4.170 25 C -0.141 4.141 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.228 0.772 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.140 0.860 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.932 8.266 -14.919 23.340 hybrid contribution 0.030 -0.544 0.364 0.655 sum -15.902 7.722 -14.556 22.899 Atomic orbital electron populations 1.21872 0.96952 0.98941 1.02270 1.22281 0.94358 1.00040 1.01026 1.19124 0.95522 0.88471 0.83071 0.93387 1.21073 0.88715 1.39685 1.07790 0.90244 1.24845 0.94868 0.95176 0.97694 1.69875 1.08698 1.44579 1.29853 0.86895 0.80970 0.79938 0.80869 1.20261 1.22199 1.18456 1.46191 1.15018 1.55966 1.17866 1.20475 0.82434 0.79074 0.89350 1.90660 1.51558 1.60129 1.40856 1.21644 0.97702 1.01262 0.96923 1.20331 0.95604 1.00538 0.93708 1.19967 0.97115 0.93780 0.95887 1.20969 1.01395 0.94404 0.97299 1.19886 0.98151 0.96094 0.94147 1.20786 1.02036 0.91955 1.02299 1.20842 1.01142 0.93656 0.99110 1.19876 0.98675 0.94208 0.95579 1.20783 1.00089 0.99632 0.96538 1.20946 1.00118 0.99854 0.93196 0.92897 0.92906 0.95063 0.92365 0.92858 0.92310 0.77243 0.89404 0.89260 0.90177 0.90264 0.86037 0.91287 0.91435 0.91702 0.86479 0.91301 0.91702 0.91494 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.52 37.16 0.32 -2.57 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.22 16 3 C 0.24 5.72 1.83 -69.09 -0.13 5.59 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.92 16 5 C -0.53 -14.47 9.31 -34.44 -0.32 -14.79 16 6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.56 13.96 55.43 0.77 -25.78 16 9 Si 0.88 21.88 24.41 -169.99 -4.15 17.73 16 10 H -0.28 -6.62 6.83 56.52 0.39 -6.23 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 13 N -0.70 -13.70 5.02 -54.94 -0.28 -13.97 16 14 C 0.50 9.05 6.40 -10.98 -0.07 8.97 16 15 O -0.55 -11.73 13.12 5.55 0.07 -11.66 16 16 C -0.14 -1.79 5.68 -27.88 -0.16 -1.95 16 17 C -0.06 -0.82 4.63 -27.88 -0.13 -0.95 16 18 C -0.07 -0.78 5.13 -104.62 -0.54 -1.32 16 19 C -0.12 -1.36 9.36 -39.58 -0.37 -1.73 16 20 C -0.08 -0.83 5.88 -104.62 -0.62 -1.45 16 21 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 22 C -0.13 -1.26 9.36 -39.58 -0.37 -1.63 16 23 C -0.08 -0.83 5.88 -104.63 -0.62 -1.44 16 24 C -0.11 -0.84 10.01 36.00 0.36 -0.48 16 25 C -0.12 -1.34 9.36 -39.59 -0.37 -1.71 16 26 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 27 H 0.05 1.03 5.65 -51.93 -0.29 0.74 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.25 3.22 -51.93 -0.17 1.09 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 32 H 0.39 6.82 8.54 -40.82 -0.35 6.47 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 36 H 0.08 1.05 8.04 -51.93 -0.42 0.64 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 40 H 0.06 0.42 8.08 -51.94 -0.42 0.00 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 44 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 45 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -31.28 358.52 -8.54 -39.82 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.48 Total: 5.54 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -2.88 Total: -17.08 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.50 Total: -39.76 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.15 Total: 17.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.28 -8.54 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183970811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.802 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds