Wall clock time and date at job start Tue Mar 31 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47107 * 2 1 4 4 H 1.09003 * 109.47304 * 55.00112 * 3 2 1 5 5 C 1.50699 * 109.47169 * 174.99965 * 3 2 1 6 6 H 1.07999 * 120.00474 * 119.99447 * 5 3 2 7 7 C 1.37879 * 119.99835 * 300.00398 * 5 3 2 8 8 N 1.31520 * 119.99879 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00193 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47398 * 90.00241 * 9 7 5 11 11 H 1.48505 * 109.47359 * 210.00406 * 9 7 5 12 12 H 1.48506 * 109.47140 * 330.00133 * 9 7 5 13 13 N 1.46493 * 109.47454 * 294.99786 * 3 2 1 14 14 C 1.34784 * 119.99899 * 84.99852 * 13 3 2 15 15 O 1.21284 * 119.99847 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99958 * 180.02562 * 14 13 3 17 17 C 1.52996 * 109.46822 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47203 * 180.02562 * 17 16 14 19 19 C 1.38234 * 119.99895 * 269.72772 * 18 17 16 20 20 C 1.38240 * 120.00062 * 180.32314 * 19 18 17 21 21 C 1.50700 * 120.00045 * 179.97438 * 20 19 18 22 22 C 1.38234 * 119.99686 * 359.92348 * 20 19 18 23 23 C 1.38234 * 120.00244 * 0.07174 * 22 20 19 24 24 C 1.50696 * 119.99789 * 179.97438 * 23 22 20 25 25 C 1.38230 * 119.99864 * 359.95693 * 23 22 20 26 26 H 1.09006 * 109.46920 * 299.99931 * 1 2 3 27 27 H 1.09004 * 109.47197 * 59.99839 * 1 2 3 28 28 H 1.09000 * 109.47381 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46557 * 240.00071 * 2 1 3 30 30 H 1.08998 * 109.46555 * 120.00401 * 2 1 3 31 31 H 0.97001 * 119.99795 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00664 * 265.00581 * 13 3 2 33 33 H 1.08994 * 109.46951 * 60.00069 * 16 14 13 34 34 H 1.09001 * 109.46926 * 300.00011 * 16 14 13 35 35 H 1.09003 * 109.47252 * 60.00179 * 17 16 14 36 36 H 1.09001 * 109.47630 * 300.00233 * 17 16 14 37 37 H 1.08001 * 120.00279 * 0.27436 * 19 18 17 38 38 H 1.09000 * 109.46827 * 269.92740 * 21 20 19 39 39 H 1.09003 * 109.47455 * 29.92447 * 21 20 19 40 40 H 1.08989 * 109.47334 * 149.93038 * 21 20 19 41 41 H 1.07999 * 119.99747 * 180.02562 * 22 20 19 42 42 H 1.09001 * 109.47242 * 269.97350 * 24 23 22 43 43 H 1.08999 * 109.47144 * 29.97997 * 24 23 22 44 44 H 1.09000 * 109.47061 * 149.97941 * 24 23 22 45 45 H 1.08000 * 120.00356 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4540 0.8803 1.3363 9 14 3.0963 0.1099 2.5706 10 1 2.8744 -1.3262 2.2645 11 1 3.7941 0.2358 3.8755 12 1 1.7881 0.8092 2.6394 13 7 1.6525 2.0974 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3393 2.6326 -0.4341 16 6 0.0363 3.3377 -2.6548 17 6 -1.3824 3.8946 -2.5210 18 6 -1.7815 4.5674 -3.8091 19 6 -1.5250 5.9130 -3.9943 20 6 -1.8972 6.5317 -5.1732 21 6 -1.6180 7.9989 -5.3749 22 6 -2.5244 5.8044 -6.1674 23 6 -2.7808 4.4587 -5.9822 24 6 -3.4651 3.6660 -7.0658 25 6 -2.4092 3.8402 -4.8031 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8770 0.4818 2.1129 32 1 2.2720 2.1231 -1.9978 33 1 0.0674 2.6130 -3.4684 34 1 0.7278 4.1530 -2.8678 35 1 -1.4130 4.6194 -1.7074 36 1 -2.0741 3.0796 -2.3077 37 1 -1.0346 6.4812 -3.2178 38 1 -2.4654 8.5827 -5.0154 39 1 -0.7226 8.2782 -4.8196 40 1 -1.4643 8.1970 -6.4356 41 1 -2.8147 6.2876 -7.0885 42 1 -4.5443 3.7049 -6.9181 43 1 -3.2159 4.0899 -8.0386 44 1 -3.1299 2.6296 -7.0245 45 1 -2.6099 2.7890 -4.6582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183970811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:48 Heat of formation + Delta-G solvation = -59.508045 kcal Electronic energy + Delta-G solvation = -22505.421408 eV Core-core repulsion = 19292.829558 eV Total energy + Delta-G solvation = -3212.591850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96181 -40.33225 -37.22501 -35.32966 -34.38699 -34.34322 -33.26854 -31.18442 -29.40742 -28.11990 -27.51630 -25.86277 -24.43267 -22.41467 -21.57586 -21.27947 -20.98161 -19.09410 -17.64969 -17.48483 -17.09614 -16.93653 -16.32849 -16.10441 -15.25380 -15.19606 -14.94894 -14.66385 -14.58040 -13.99746 -13.97445 -13.86311 -13.77755 -13.56784 -13.44772 -13.29998 -13.27080 -12.95726 -12.76400 -12.74059 -12.40524 -12.12771 -12.06244 -11.86002 -11.75837 -11.70639 -11.38029 -11.23203 -10.86799 -10.63113 -9.72512 -9.46065 -9.41229 -8.38967 -6.44183 0.46185 0.49060 1.25833 1.34047 1.44011 1.84749 2.25201 2.51943 2.85164 2.96972 3.74900 3.88490 3.97173 4.05890 4.22485 4.24191 4.29096 4.31490 4.34366 4.48386 4.52156 4.54011 4.71057 4.71701 4.78534 4.83225 4.86268 4.87171 4.88323 5.00972 5.08934 5.09409 5.13633 5.17331 5.24438 5.34309 5.40716 5.42355 5.52649 5.69498 5.70343 5.70622 5.79111 6.15095 6.18762 6.58352 6.93881 7.19656 7.52812 8.76365 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.003050 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.645187 B = 9177.554534 C = 9630.765808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.020 0.980 5 C -0.533 4.533 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.935 5.935 9 Si 0.937 3.063 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.704 5.704 14 C 0.501 3.499 15 O -0.584 6.584 16 C -0.121 4.121 17 C -0.056 4.056 18 C -0.077 4.077 19 C -0.139 4.139 20 C -0.089 4.089 21 C -0.113 4.113 22 C -0.135 4.135 23 C -0.089 4.089 24 C -0.113 4.113 25 C -0.136 4.136 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.270 0.730 32 H 0.406 0.594 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.138 0.862 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.265 8.291 -17.490 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.038 0.962 5 C -0.571 4.571 6 H 0.074 0.926 7 C -0.171 4.171 8 N -0.574 5.574 9 Si 0.764 3.236 10 H -0.185 1.185 11 H -0.221 1.221 12 H -0.186 1.186 13 N -0.353 5.353 14 C 0.289 3.711 15 O -0.465 6.465 16 C -0.161 4.161 17 C -0.094 4.094 18 C -0.077 4.077 19 C -0.157 4.157 20 C -0.090 4.090 21 C -0.170 4.170 22 C -0.153 4.153 23 C -0.089 4.089 24 C -0.169 4.169 25 C -0.154 4.154 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.241 0.759 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.141 0.859 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.155 0.845 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.639 8.216 -16.727 25.660 hybrid contribution 0.552 -0.434 0.833 1.089 sum -17.087 7.782 -15.894 24.600 Atomic orbital electron populations 1.21758 0.95130 1.00500 1.01640 1.22202 0.95917 0.98526 1.00943 1.18753 0.93032 0.89679 0.84169 0.96178 1.21327 0.90512 1.38423 1.06884 0.92621 1.25561 0.95735 0.95933 0.99881 1.69982 1.10277 1.46224 1.30897 0.86025 0.79264 0.79954 0.78312 1.18521 1.22102 1.18567 1.46066 1.16083 1.56282 1.16871 1.21252 0.81250 0.78106 0.90541 1.90649 1.52311 1.61098 1.42483 1.21604 0.98218 1.01753 0.94491 1.20198 0.95054 0.99952 0.94173 1.19860 0.98249 0.94131 0.95498 1.21110 1.02103 0.94420 0.98060 1.20200 0.97632 0.97362 0.93755 1.20827 1.02419 0.90452 1.03276 1.21164 1.00614 0.93733 0.99780 1.20209 0.98221 0.94666 0.95801 1.20827 1.00307 0.99555 0.96228 1.21105 1.00435 1.00311 0.93552 0.94589 0.92491 0.92346 0.91328 0.93980 0.92095 0.75939 0.87098 0.87727 0.91555 0.91055 0.85905 0.90496 0.91296 0.90381 0.84453 0.90484 0.90453 0.91099 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.52 71.98 0.61 -4.51 16 2 C -0.14 -5.94 5.11 30.59 0.16 -5.78 16 3 C 0.25 11.75 1.83 44.24 0.08 11.83 16 4 H 0.02 1.08 6.63 -2.39 -0.02 1.06 16 5 C -0.53 -29.24 9.31 25.60 0.24 -29.00 16 6 H 0.06 3.24 7.98 -2.91 -0.02 3.22 16 7 C 0.03 1.62 5.45 84.65 0.46 2.08 16 8 N -0.93 -56.50 13.96 21.45 0.30 -56.20 16 9 Si 0.94 45.26 24.41 68.60 1.67 46.93 16 10 H -0.26 -11.78 6.83 99.48 0.68 -11.10 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 12 H -0.26 -12.55 6.53 99.48 0.65 -11.90 16 13 N -0.70 -27.05 5.02 -446.10 -2.24 -29.29 16 14 C 0.50 17.67 6.40 87.66 0.56 18.23 16 15 O -0.58 -24.68 13.12 -3.04 -0.04 -24.72 16 16 C -0.12 -3.02 5.68 29.85 0.17 -2.85 16 17 C -0.06 -1.39 4.63 29.85 0.14 -1.25 16 18 C -0.08 -1.72 5.13 -19.87 -0.10 -1.82 16 19 C -0.14 -2.94 9.36 22.27 0.21 -2.73 16 20 C -0.09 -1.64 5.88 -19.86 -0.12 -1.76 16 21 C -0.11 -1.49 10.01 71.24 0.71 -0.77 16 22 C -0.14 -2.31 9.36 22.27 0.21 -2.10 16 23 C -0.09 -1.58 5.88 -19.87 -0.12 -1.70 16 24 C -0.11 -1.38 10.01 71.23 0.71 -0.67 16 25 C -0.14 -2.76 9.36 22.27 0.21 -2.55 16 26 H 0.03 1.49 7.85 -2.38 -0.02 1.47 16 27 H 0.06 2.12 5.65 -2.38 -0.01 2.11 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.04 1.91 3.22 -2.39 -0.01 1.90 16 31 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.41 13.72 8.54 -92.71 -0.79 12.92 16 33 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 36 H 0.07 1.86 8.04 -2.39 -0.02 1.84 16 37 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 40 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 41 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 44 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 45 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -67.45 358.52 3.92 -63.52 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.09 Total: 25.10 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 4.13 Total: -25.35 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -1.94 Total: -85.49 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.04 Total: -24.72 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.67 Total: 46.93 kcal Total: -67.45 3.92 -63.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183970811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.017 kcal (2) G-P(sol) polarization free energy of solvation -67.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds