Wall clock time and date at job start Tue Mar 31 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.08993 * 109.47194 * 54.99781 * 3 2 1 5 5 C 1.53006 * 109.47127 * 294.99938 * 3 2 1 6 6 C 1.52999 * 109.46991 * 175.00623 * 3 2 1 7 7 C 1.50700 * 109.47186 * 185.00041 * 6 3 2 8 8 O 1.21281 * 120.00075 * 359.97438 * 7 6 3 9 9 N 1.34775 * 120.00291 * 179.97438 * 7 6 3 10 10 C 1.46503 * 120.00100 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47042 * 35.00127 * 10 9 7 12 12 C 1.53003 * 109.46857 * 155.00200 * 10 9 7 13 13 C 1.50694 * 109.47007 * 294.99931 * 12 10 9 14 14 H 1.07998 * 120.00360 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00108 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99758 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00227 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47125 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47147 * 119.99707 * 17 15 13 20 20 H 1.48501 * 109.47058 * 239.99531 * 17 15 13 21 21 C 1.50703 * 109.46998 * 274.99897 * 10 9 7 22 22 C 1.38226 * 120.00016 * 319.72971 * 21 10 9 23 23 C 1.38236 * 119.99766 * 179.78780 * 22 21 10 24 24 C 1.38234 * 119.99890 * 0.43990 * 23 22 21 25 25 C 1.38233 * 120.00023 * 359.81336 * 24 23 22 26 26 C 1.38228 * 119.99828 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47227 * 59.99725 * 1 2 3 28 28 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46849 * 299.99880 * 1 2 3 30 30 H 1.09006 * 109.46717 * 239.99823 * 2 1 3 31 31 H 1.09000 * 109.47227 * 120.00275 * 2 1 3 32 32 H 1.09001 * 109.46998 * 59.99868 * 5 3 2 33 33 H 1.09000 * 109.47050 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.46801 * 300.00272 * 5 3 2 35 35 H 1.09007 * 109.46705 * 304.99506 * 6 3 2 36 36 H 1.08993 * 109.47768 * 64.99697 * 6 3 2 37 37 H 0.97000 * 119.99788 * 0.02562 * 9 7 6 38 38 H 1.08995 * 109.47026 * 55.00008 * 12 10 9 39 39 H 1.09000 * 109.46771 * 174.99785 * 12 10 9 40 40 H 0.97009 * 120.00121 * 180.02562 * 16 15 13 41 41 H 1.08003 * 120.00516 * 359.97438 * 22 21 10 42 42 H 1.08003 * 120.00118 * 180.27378 * 23 22 21 43 43 H 1.08006 * 119.99887 * 179.83228 * 24 23 22 44 44 H 1.08003 * 120.00092 * 180.02562 * 25 24 23 45 45 H 1.08005 * 119.99896 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1256 7 6 4.0570 2.8633 0.2491 8 8 3.2661 3.7827 0.2374 9 7 5.3761 3.1107 0.3726 10 6 5.8546 4.4902 0.4922 11 1 5.1320 5.0776 1.0588 12 6 7.2019 4.5017 1.2171 13 6 7.0147 4.0205 2.6328 14 1 6.0329 3.7355 2.9809 15 6 8.0966 3.9452 3.4841 16 7 9.2921 4.2927 3.0604 17 14 7.8644 3.3494 5.2393 18 1 6.4337 3.0228 5.4660 19 1 8.6912 2.1364 5.4638 20 1 8.2838 4.4160 6.1836 21 6 6.0186 5.0859 -0.8824 22 6 6.5440 4.3227 -1.9082 23 6 6.6904 4.8677 -3.1701 24 6 6.3199 6.1788 -3.4039 25 6 5.7994 6.9436 -2.3768 26 6 5.6489 6.3972 -1.1160 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.5489 2.1252 -1.3970 33 1 1.9989 3.1541 -1.3076 34 1 2.0698 1.5874 -2.1492 35 1 3.8570 0.8800 1.0112 36 1 4.0029 0.9836 -0.7597 37 1 6.0087 2.3754 0.3817 38 1 7.8989 3.8432 0.6987 39 1 7.6001 5.5163 1.2277 40 1 10.0535 4.2393 3.6592 41 1 6.8373 3.2996 -1.7245 42 1 7.0967 4.2701 -3.9727 43 1 6.4368 6.6055 -4.3892 44 1 5.5095 7.9678 -2.5595 45 1 5.2426 6.9949 -0.3134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189685306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:41 Heat of formation + Delta-G solvation = -47.478853 kcal Electronic energy + Delta-G solvation = -23160.673866 eV Core-core repulsion = 19948.603641 eV Total energy + Delta-G solvation = -3212.070225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.72630 -38.57929 -36.38507 -34.99711 -32.73100 -31.38557 -30.51726 -30.31219 -28.82888 -27.35111 -24.96925 -23.83102 -22.28489 -21.94151 -20.58023 -19.70790 -19.50063 -16.95602 -16.41834 -16.15852 -15.66882 -15.14871 -14.87119 -14.62787 -14.49522 -14.17701 -13.89796 -13.43663 -13.15008 -12.97442 -12.61283 -12.56672 -12.34219 -12.11155 -11.88119 -11.75953 -11.53250 -11.27368 -11.13102 -10.91620 -10.74428 -10.73533 -10.58820 -10.53980 -10.49161 -10.44747 -9.77359 -9.29928 -9.15041 -8.53449 -8.46008 -8.35816 -8.16428 -6.09712 -4.13008 1.79482 1.81418 3.20684 3.25458 3.34149 3.38387 3.80518 4.25740 4.39447 4.86230 4.90935 4.95378 5.26152 5.26953 5.28450 5.30914 5.36058 5.40111 5.53386 5.56309 5.69269 5.73368 5.73937 5.86648 5.92158 5.95363 5.95638 6.06185 6.09915 6.18167 6.26727 6.37539 6.45997 6.49659 6.59971 6.61559 6.85814 6.86543 6.98413 7.13668 7.41819 7.49885 7.64103 7.87313 8.19610 8.26676 8.85590 8.93261 9.52114 11.00876 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.006027 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.002698 B = 4644.524962 C = 7213.182686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.074 4.074 4 H 0.077 0.923 5 C -0.152 4.152 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.549 6.549 9 N -0.703 5.703 10 C 0.184 3.816 11 H 0.086 0.914 12 C 0.023 3.977 13 C -0.519 4.519 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.069 4.069 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.136 4.136 25 C -0.123 4.123 26 C -0.109 4.109 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.400 0.600 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 -5.209 -10.539 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.093 4.093 4 H 0.095 0.905 5 C -0.209 4.209 6 C -0.179 4.179 7 C 0.296 3.704 8 O -0.427 6.427 9 N -0.351 5.351 10 C 0.079 3.921 11 H 0.104 0.896 12 C -0.014 4.014 13 C -0.557 4.557 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.070 4.070 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.154 4.154 25 C -0.141 4.141 26 C -0.127 4.127 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.234 0.766 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.423 -4.534 -10.473 15.455 hybrid contribution 0.488 -0.673 1.015 1.312 sum -9.935 -5.207 -9.457 14.672 Atomic orbital electron populations 1.21804 0.95995 1.01140 1.02031 1.21600 0.95928 0.96502 1.01764 1.20881 0.93196 0.95500 0.99750 0.90484 1.21978 1.00619 1.02463 0.95838 1.21758 0.97341 0.94953 1.03845 1.20564 0.82612 0.91164 0.76046 1.90612 1.54795 1.46632 1.50686 1.46018 1.06930 1.09427 1.72773 1.20216 0.99920 0.81447 0.90482 0.89641 1.19391 0.88745 0.98587 0.94677 1.21172 0.94346 1.44141 0.96034 0.92353 1.24990 0.95227 0.95381 0.98564 1.69972 0.99170 1.48023 1.35930 0.86549 0.78235 0.78448 0.84875 1.19736 1.21022 1.20984 1.20560 0.95866 0.94126 0.96498 1.20902 0.99264 0.99825 0.92638 1.21038 1.00873 0.95551 0.96874 1.20988 1.01029 0.94662 0.98701 1.21036 1.00274 0.99447 0.93331 1.21019 0.99699 0.95178 0.96826 0.92493 0.93129 0.92770 0.92149 0.92067 0.93150 0.90502 0.93738 0.89114 0.89471 0.76579 0.95778 0.94873 0.92935 0.86604 0.86783 0.86881 0.86651 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.67 37.16 0.36 -1.05 16 2 C -0.12 -1.20 5.40 -26.73 -0.14 -1.35 16 3 C -0.07 -0.93 2.04 -90.62 -0.18 -1.11 16 4 H 0.08 1.10 7.95 -51.93 -0.41 0.68 16 5 C -0.15 -1.94 8.69 37.16 0.32 -1.62 16 6 C -0.14 -1.79 5.17 -27.88 -0.14 -1.94 16 7 C 0.51 8.77 7.50 -10.99 -0.08 8.68 16 8 O -0.55 -11.13 13.63 5.56 0.08 -11.05 16 9 N -0.70 -12.50 4.04 -54.93 -0.22 -12.72 16 10 C 0.18 3.74 2.11 -69.08 -0.15 3.59 16 11 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 12 C 0.02 0.56 4.49 -27.88 -0.13 0.43 16 13 C -0.52 -13.70 8.84 -34.44 -0.30 -14.01 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 17 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.07 -1.29 4.91 -104.63 -0.51 -1.80 16 22 C -0.11 -1.82 9.32 -39.59 -0.37 -2.19 16 23 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 24 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 25 C -0.12 -1.87 10.05 -39.59 -0.40 -2.26 16 26 C -0.11 -1.91 9.67 -39.59 -0.38 -2.29 16 27 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.58 6.56 -51.93 -0.34 0.24 16 33 H 0.08 1.21 5.95 -51.93 -0.31 0.90 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 6.52 8.60 -40.82 -0.35 6.17 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.12 1.82 7.73 -52.48 -0.41 1.41 16 42 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 43 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 44 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 45 H 0.12 2.02 8.04 -52.48 -0.42 1.60 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -30.28 367.58 -9.48 -39.76 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.58 Total: 7.32 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -3.01 Total: -19.98 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.51 Total: -37.56 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.28 -9.48 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189685306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.715 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds