Wall clock time and date at job start Tue Mar 31 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.08993 * 109.47194 * 54.99781 * 3 2 1 5 5 C 1.53006 * 109.47127 * 294.99938 * 3 2 1 6 6 C 1.52999 * 109.46991 * 175.00623 * 3 2 1 7 7 C 1.50700 * 109.47186 * 185.00041 * 6 3 2 8 8 O 1.21281 * 120.00075 * 359.97438 * 7 6 3 9 9 N 1.34775 * 120.00291 * 179.97438 * 7 6 3 10 10 C 1.46503 * 120.00100 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47042 * 35.00127 * 10 9 7 12 12 C 1.53003 * 109.46857 * 155.00200 * 10 9 7 13 13 C 1.50694 * 109.47007 * 294.99931 * 12 10 9 14 14 H 1.07998 * 120.00360 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00108 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99758 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00227 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47125 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47147 * 119.99707 * 17 15 13 20 20 H 1.48501 * 109.47058 * 239.99531 * 17 15 13 21 21 C 1.50703 * 109.46998 * 274.99897 * 10 9 7 22 22 C 1.38226 * 120.00016 * 319.72971 * 21 10 9 23 23 C 1.38236 * 119.99766 * 179.78780 * 22 21 10 24 24 C 1.38234 * 119.99890 * 0.43990 * 23 22 21 25 25 C 1.38233 * 120.00023 * 359.81336 * 24 23 22 26 26 C 1.38228 * 119.99828 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47227 * 59.99725 * 1 2 3 28 28 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46849 * 299.99880 * 1 2 3 30 30 H 1.09006 * 109.46717 * 239.99823 * 2 1 3 31 31 H 1.09000 * 109.47227 * 120.00275 * 2 1 3 32 32 H 1.09001 * 109.46998 * 59.99868 * 5 3 2 33 33 H 1.09000 * 109.47050 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.46801 * 300.00272 * 5 3 2 35 35 H 1.09007 * 109.46705 * 304.99506 * 6 3 2 36 36 H 1.08993 * 109.47768 * 64.99697 * 6 3 2 37 37 H 0.97000 * 119.99788 * 0.02562 * 9 7 6 38 38 H 1.08995 * 109.47026 * 55.00008 * 12 10 9 39 39 H 1.09000 * 109.46771 * 174.99785 * 12 10 9 40 40 H 0.97009 * 120.00121 * 180.02562 * 16 15 13 41 41 H 1.08003 * 120.00516 * 359.97438 * 22 21 10 42 42 H 1.08003 * 120.00118 * 180.27378 * 23 22 21 43 43 H 1.08006 * 119.99887 * 179.83228 * 24 23 22 44 44 H 1.08003 * 120.00092 * 180.02562 * 25 24 23 45 45 H 1.08005 * 119.99896 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1256 7 6 4.0570 2.8633 0.2491 8 8 3.2661 3.7827 0.2374 9 7 5.3761 3.1107 0.3726 10 6 5.8546 4.4902 0.4922 11 1 5.1320 5.0776 1.0588 12 6 7.2019 4.5017 1.2171 13 6 7.0147 4.0205 2.6328 14 1 6.0329 3.7355 2.9809 15 6 8.0966 3.9452 3.4841 16 7 9.2921 4.2927 3.0604 17 14 7.8644 3.3494 5.2393 18 1 6.4337 3.0228 5.4660 19 1 8.6912 2.1364 5.4638 20 1 8.2838 4.4160 6.1836 21 6 6.0186 5.0859 -0.8824 22 6 6.5440 4.3227 -1.9082 23 6 6.6904 4.8677 -3.1701 24 6 6.3199 6.1788 -3.4039 25 6 5.7994 6.9436 -2.3768 26 6 5.6489 6.3972 -1.1160 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.5489 2.1252 -1.3970 33 1 1.9989 3.1541 -1.3076 34 1 2.0698 1.5874 -2.1492 35 1 3.8570 0.8800 1.0112 36 1 4.0029 0.9836 -0.7597 37 1 6.0087 2.3754 0.3817 38 1 7.8989 3.8432 0.6987 39 1 7.6001 5.5163 1.2277 40 1 10.0535 4.2393 3.6592 41 1 6.8373 3.2996 -1.7245 42 1 7.0967 4.2701 -3.9727 43 1 6.4368 6.6055 -4.3892 44 1 5.5095 7.9678 -2.5595 45 1 5.2426 6.9949 -0.3134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189685306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:40 Heat of formation + Delta-G solvation = -63.029324 kcal Electronic energy + Delta-G solvation = -23161.348185 eV Core-core repulsion = 19948.603641 eV Total energy + Delta-G solvation = -3212.744544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.12128 -39.84909 -37.49662 -36.50878 -34.70993 -32.76416 -31.72113 -31.32577 -30.52729 -28.52092 -26.64995 -24.85907 -23.78663 -23.35681 -21.86488 -21.09957 -20.62669 -18.69534 -17.88448 -17.65037 -17.05658 -16.49689 -16.34385 -16.04931 -15.70089 -15.39566 -14.98530 -14.74860 -14.49253 -14.19627 -14.15884 -13.91790 -13.67789 -13.44173 -13.36239 -12.94286 -12.77002 -12.71581 -12.62242 -12.47830 -12.18105 -12.09262 -11.87800 -11.73282 -11.57647 -11.51311 -11.36734 -11.30058 -10.67831 -10.49619 -9.90194 -9.75124 -9.51023 -8.21082 -6.31307 0.51768 0.55989 1.37745 1.40517 1.51956 1.84038 2.39327 2.44043 2.98409 3.13336 3.84474 3.90407 3.99560 4.03703 4.06016 4.21084 4.31763 4.32482 4.48211 4.49056 4.64461 4.66123 4.71881 4.76954 4.78667 4.79358 4.87592 4.95463 5.13075 5.15655 5.18609 5.20424 5.25203 5.30685 5.36574 5.43794 5.54400 5.61140 5.61427 5.63991 5.67187 5.77776 5.93968 6.15932 6.20562 6.79612 6.81664 7.37676 7.47212 8.89906 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.006027 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.002698 B = 4644.524962 C = 7213.182686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.073 4.073 4 H 0.052 0.948 5 C -0.147 4.147 6 C -0.131 4.131 7 C 0.504 3.496 8 O -0.584 6.584 9 N -0.701 5.701 10 C 0.200 3.800 11 H 0.053 0.947 12 C 0.038 3.962 13 C -0.528 4.528 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.957 3.043 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.283 1.283 21 C -0.096 4.096 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.135 4.135 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.407 0.593 38 H 0.012 0.988 39 H 0.000 1.000 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.142 0.858 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 -6.924 -12.005 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.092 4.092 4 H 0.070 0.930 5 C -0.204 4.204 6 C -0.170 4.170 7 C 0.293 3.707 8 O -0.465 6.465 9 N -0.350 5.350 10 C 0.095 3.905 11 H 0.072 0.928 12 C 0.000 4.000 13 C -0.566 4.566 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.783 3.217 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.209 1.209 21 C -0.097 4.097 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.142 4.142 26 C -0.154 4.154 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.243 0.757 38 H 0.031 0.969 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.165 0.835 43 H 0.169 0.831 44 H 0.160 0.840 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.863 -6.268 -11.943 17.318 hybrid contribution 0.612 -0.067 1.404 1.534 sum -10.250 -6.335 -10.538 16.008 Atomic orbital electron populations 1.21812 0.95498 1.02037 1.01694 1.21555 0.96336 0.94425 1.02827 1.20870 0.92704 0.97082 0.98545 0.92978 1.21904 1.01283 1.00554 0.96668 1.21815 0.97697 0.91749 1.05769 1.21380 0.81740 0.92791 0.74805 1.90602 1.55485 1.48291 1.52096 1.45951 1.07663 1.08483 1.72918 1.19665 0.96736 0.82798 0.91340 0.92850 1.19131 0.90504 0.96055 0.94286 1.21415 0.94062 1.43859 0.97246 0.92907 1.25784 0.94892 0.95496 1.02615 1.70081 0.99966 1.49124 1.37470 0.85517 0.78311 0.78106 0.79807 1.19336 1.19935 1.20865 1.20451 0.98280 0.95016 0.95947 1.21069 0.99466 1.00129 0.93230 1.21445 0.99833 0.96225 0.96662 1.21465 0.99070 0.94292 0.99950 1.21373 0.99566 1.00873 0.92376 1.21166 1.00950 0.95113 0.98159 0.92493 0.91590 0.93533 0.90644 0.91385 0.92182 0.93972 0.92201 0.87594 0.86747 0.75696 0.96940 0.98150 0.92718 0.86027 0.83512 0.83121 0.83984 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.67 71.98 0.70 -1.82 16 2 C -0.11 -1.99 5.40 30.59 0.17 -1.83 16 3 C -0.07 -1.74 2.04 -10.79 -0.02 -1.77 16 4 H 0.05 1.50 7.95 -2.39 -0.02 1.48 16 5 C -0.15 -3.65 8.69 71.98 0.63 -3.02 16 6 C -0.13 -3.20 5.17 29.85 0.15 -3.05 16 7 C 0.50 17.66 7.50 87.66 0.66 18.32 16 8 O -0.58 -24.78 13.63 -3.03 -0.04 -24.83 16 9 N -0.70 -25.67 4.04 -446.08 -1.80 -27.47 16 10 C 0.20 8.62 2.11 44.25 0.09 8.72 16 11 H 0.05 2.60 7.44 -2.39 -0.02 2.58 16 12 C 0.04 1.91 4.49 29.85 0.13 2.04 16 13 C -0.53 -28.80 8.84 25.60 0.23 -28.57 16 14 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 15 C 0.01 0.59 5.46 84.65 0.46 1.06 16 16 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 17 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 C -0.10 -3.70 4.91 -19.87 -0.10 -3.80 16 22 C -0.12 -4.03 9.32 22.27 0.21 -3.82 16 23 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 24 C -0.13 -3.36 10.05 22.27 0.22 -3.13 16 25 C -0.12 -3.63 10.05 22.27 0.22 -3.41 16 26 C -0.14 -4.94 9.67 22.27 0.22 -4.72 16 27 H 0.06 0.93 6.56 -2.39 -0.02 0.91 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.34 6.56 -2.39 -0.02 1.32 16 33 H 0.04 1.35 5.95 -2.39 -0.01 1.34 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.41 13.45 8.60 -92.71 -0.80 12.65 16 38 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 41 H 0.12 3.78 7.73 -2.91 -0.02 3.76 16 42 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 43 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 44 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 45 H 0.11 4.03 8.04 -2.91 -0.02 4.01 16 Total: -1.00 -68.07 367.58 4.81 -63.26 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.16 Total: 29.45 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 4.19 Total: -31.98 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -1.52 Total: -81.38 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.04 Total: -24.83 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -68.07 4.81 -63.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189685306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.226 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds