Wall clock time and date at job start Tue Mar 31 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47125 * 2 1 4 4 H 1.09005 * 109.47098 * 55.00027 * 3 2 1 5 5 C 1.52996 * 109.47186 * 295.00356 * 3 2 1 6 6 C 1.53002 * 109.47329 * 174.99803 * 3 2 1 7 7 C 1.50706 * 109.46925 * 185.00035 * 6 3 2 8 8 O 1.21279 * 120.00072 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99762 * 179.97438 * 7 6 3 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47135 * 325.00366 * 10 9 7 12 12 C 1.52995 * 109.47630 * 205.00405 * 10 9 7 13 13 C 1.50701 * 109.47201 * 65.00031 * 12 10 9 14 14 H 1.07997 * 119.99743 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00219 * 180.02562 * 13 12 10 16 16 N 1.31522 * 119.99666 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00031 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47440 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46988 * 120.00248 * 17 15 13 20 20 H 1.48505 * 109.47320 * 239.99864 * 17 15 13 21 21 C 1.50702 * 109.46923 * 85.00020 * 10 9 7 22 22 C 1.38239 * 119.99875 * 39.73138 * 21 10 9 23 23 C 1.38235 * 119.99817 * 179.78611 * 22 21 10 24 24 C 1.38233 * 119.99884 * 0.44016 * 23 22 21 25 25 C 1.38233 * 120.00174 * 359.81460 * 24 23 22 26 26 C 1.38230 * 120.00233 * 220.00267 * 21 10 9 27 27 H 1.08997 * 109.46792 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46955 * 299.99322 * 1 2 3 29 29 H 1.08998 * 109.47159 * 60.00366 * 1 2 3 30 30 H 1.08996 * 109.47505 * 240.00189 * 2 1 3 31 31 H 1.09003 * 109.47586 * 119.99787 * 2 1 3 32 32 H 1.09007 * 109.47359 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.47049 * 299.99375 * 5 3 2 34 34 H 1.09001 * 109.47593 * 59.99409 * 5 3 2 35 35 H 1.09000 * 109.46497 * 65.00298 * 6 3 2 36 36 H 1.09000 * 109.47312 * 305.00077 * 6 3 2 37 37 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 38 38 H 1.08994 * 109.47690 * 185.00185 * 12 10 9 39 39 H 1.09003 * 109.47048 * 305.00005 * 12 10 9 40 40 H 0.97002 * 119.99569 * 179.97438 * 16 15 13 41 41 H 1.08004 * 120.00079 * 359.97438 * 22 21 10 42 42 H 1.07999 * 119.99734 * 180.27544 * 23 22 21 43 43 H 1.08004 * 119.99831 * 179.83604 * 24 23 22 44 44 H 1.08005 * 119.99693 * 180.02562 * 25 24 23 45 45 H 1.08005 * 120.00121 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 6 4.0569 2.8635 0.2493 8 8 3.2659 3.7827 0.2383 9 7 5.3760 3.1109 0.3730 10 6 5.8545 4.4904 0.4925 11 1 5.2291 5.1457 -0.1138 12 6 7.3022 4.5722 0.0045 13 6 7.3542 4.2585 -1.4686 14 1 6.4457 4.0237 -2.0031 15 6 8.5619 4.2701 -2.1337 16 7 9.6686 4.5545 -1.4823 17 14 8.6265 3.8805 -3.9594 18 1 7.2555 3.5956 -4.4536 19 1 9.1854 5.0436 -4.6942 20 1 9.4901 2.6930 -4.1820 21 6 5.7852 4.9229 1.9345 22 6 6.1317 4.0385 2.9388 23 6 6.0724 4.4366 4.2612 24 6 5.6578 5.7163 4.5798 25 6 5.3062 6.5990 3.5758 26 6 5.3697 6.2022 2.2531 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.9989 3.1541 -1.3075 33 1 2.0698 1.5876 -2.1491 34 1 0.5489 2.1252 -1.3969 35 1 4.0029 0.9837 -0.7596 36 1 3.8571 0.8801 1.0114 37 1 6.0086 2.3757 0.3821 38 1 7.6871 5.5775 0.1756 39 1 7.9111 3.8521 0.5511 40 1 10.5183 4.5622 -1.9502 41 1 6.4517 3.0374 2.6901 42 1 6.3474 3.7471 5.0456 43 1 5.6089 6.0265 5.6131 44 1 4.9827 7.5989 3.8247 45 1 5.0951 6.8920 1.4687 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189685343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:45 Heat of formation + Delta-G solvation = -47.450354 kcal Electronic energy + Delta-G solvation = -23135.213982 eV Core-core repulsion = 19923.144993 eV Total energy + Delta-G solvation = -3212.068989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72564 -38.57817 -36.38014 -34.99794 -32.73077 -31.38553 -30.51761 -30.30404 -28.83536 -27.32869 -24.96902 -23.83017 -22.28211 -21.94399 -20.57311 -19.71432 -19.49109 -16.97754 -16.41482 -16.15965 -15.51376 -15.32194 -14.87713 -14.62354 -14.45590 -14.15891 -13.90864 -13.44638 -13.09049 -12.94766 -12.75613 -12.48239 -12.33638 -12.11327 -11.87384 -11.77018 -11.48580 -11.25954 -11.13027 -10.95733 -10.74813 -10.71531 -10.57886 -10.53988 -10.49895 -10.40541 -9.77156 -9.32218 -9.14823 -8.53532 -8.46072 -8.34865 -8.16469 -6.09719 -4.12992 1.79557 1.81467 3.20570 3.25432 3.34143 3.38344 3.80493 4.25769 4.39461 4.86542 4.91101 4.95536 5.26110 5.26956 5.28474 5.31454 5.33842 5.41107 5.53784 5.56109 5.70370 5.73350 5.79261 5.84909 5.92194 5.95518 5.96833 6.06224 6.11070 6.18910 6.27464 6.37574 6.46054 6.50560 6.59894 6.65289 6.85831 6.86604 6.98531 7.13729 7.41883 7.49937 7.64109 7.87361 8.19566 8.26640 8.85534 8.93278 9.52124 11.00899 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.008798 B = 0.006116 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.859715 B = 4576.694524 C = 7157.167958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.073 4.073 4 H 0.075 0.925 5 C -0.154 4.154 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.549 6.549 9 N -0.703 5.703 10 C 0.184 3.816 11 H 0.086 0.914 12 C 0.023 3.977 13 C -0.519 4.519 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.069 4.069 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.136 4.136 25 C -0.123 4.123 26 C -0.109 4.109 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.400 0.600 38 H 0.033 0.967 39 H 0.024 0.976 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.562 -6.259 7.593 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.092 4.092 4 H 0.094 0.906 5 C -0.211 4.211 6 C -0.179 4.179 7 C 0.296 3.704 8 O -0.427 6.427 9 N -0.352 5.352 10 C 0.079 3.921 11 H 0.104 0.896 12 C -0.014 4.014 13 C -0.557 4.557 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.071 4.071 22 C -0.127 4.127 23 C -0.143 4.143 24 C -0.154 4.154 25 C -0.141 4.141 26 C -0.127 4.127 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.234 0.766 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.923 -5.578 7.544 15.172 hybrid contribution 0.655 -0.559 -0.978 1.303 sum -11.269 -6.138 6.565 14.414 Atomic orbital electron populations 1.21802 0.95996 1.01130 1.02032 1.21601 0.95922 0.96521 1.01753 1.20873 0.93146 0.95453 0.99756 0.90641 1.21989 1.00585 1.02603 0.95898 1.21764 0.97395 0.94899 1.03860 1.20564 0.82625 0.91186 0.76010 1.90612 1.54789 1.46620 1.50695 1.46019 1.06838 1.09482 1.72820 1.20211 0.99786 0.82270 0.89785 0.89646 1.19391 0.87151 0.98569 0.96294 1.21172 0.93279 1.47475 0.93747 0.92347 1.24990 0.95739 0.95225 0.98211 1.69975 0.98243 1.48833 1.36048 0.86549 0.78094 0.77989 0.85480 1.19731 1.20987 1.21026 1.20566 0.95889 0.93860 0.96747 1.20907 0.99869 0.99555 0.92332 1.21038 1.00764 0.96306 0.96230 1.20988 1.01410 0.94311 0.98681 1.21039 1.00791 0.99240 0.93016 1.21018 0.99356 0.96099 0.96245 0.93137 0.92836 0.92430 0.92037 0.92199 0.90425 0.93526 0.93155 0.89091 0.89495 0.76576 0.94868 0.95781 0.92938 0.86597 0.86774 0.86876 0.86645 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 37.16 0.36 -1.04 16 2 C -0.12 -1.20 5.40 -26.73 -0.14 -1.34 16 3 C -0.07 -0.91 2.04 -90.62 -0.18 -1.10 16 4 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 5 C -0.15 -2.07 8.69 37.16 0.32 -1.74 16 6 C -0.14 -1.80 5.18 -27.88 -0.14 -1.94 16 7 C 0.51 8.77 7.50 -10.98 -0.08 8.68 16 8 O -0.55 -11.13 13.63 5.56 0.08 -11.05 16 9 N -0.70 -12.50 4.02 -54.93 -0.22 -12.72 16 10 C 0.18 3.74 2.12 -69.09 -0.15 3.60 16 11 H 0.09 1.91 7.44 -51.93 -0.39 1.53 16 12 C 0.02 0.56 4.50 -27.89 -0.13 0.43 16 13 C -0.52 -13.68 8.84 -34.44 -0.30 -13.99 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 17 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.07 -1.30 4.91 -104.62 -0.51 -1.81 16 22 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 23 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 24 C -0.14 -1.95 10.05 -39.59 -0.40 -2.35 16 25 C -0.12 -1.87 10.05 -39.59 -0.40 -2.27 16 26 C -0.11 -1.91 9.67 -39.59 -0.38 -2.30 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.28 5.95 -51.92 -0.31 0.97 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.60 6.57 -51.93 -0.34 0.26 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 6.52 8.60 -40.82 -0.35 6.17 16 38 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.12 1.82 7.71 -52.48 -0.40 1.42 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 44 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 45 H 0.12 2.03 8.04 -52.48 -0.42 1.60 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -30.29 367.55 -9.48 -39.77 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.58 Total: 7.42 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -3.01 Total: -20.09 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.52 Total: -37.55 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.29 -9.48 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189685343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.679 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds