Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46952 * 2 1 4 4 H 1.09003 * 109.47210 * 56.88385 * 3 2 1 5 5 C 1.50707 * 109.46841 * 176.87577 * 3 2 1 6 6 H 1.08008 * 119.99547 * 120.00275 * 5 3 2 7 7 C 1.37869 * 120.00184 * 300.00298 * 5 3 2 8 8 N 1.31517 * 120.00500 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99917 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47093 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47096 * 119.99964 * 9 7 5 12 12 H 1.48501 * 109.47431 * 239.99884 * 9 7 5 13 13 N 1.46897 * 109.47369 * 296.88004 * 3 2 1 14 14 C 1.46901 * 110.99873 * 151.45954 * 13 3 2 15 15 H 1.08990 * 109.68110 * 328.01633 * 14 13 3 16 16 C 1.53330 * 109.68082 * 207.49404 * 14 13 3 17 17 C 1.52726 * 108.39153 * 170.42908 * 16 14 13 18 18 C 1.50623 * 110.60296 * 51.02432 * 17 16 14 19 19 C 1.37616 * 122.59199 * 342.28458 * 18 17 16 20 20 C 1.38909 * 119.72467 * 180.40932 * 19 18 17 21 21 C 1.38001 * 120.65868 * 359.74631 * 20 19 18 22 22 C 1.38134 * 119.83563 * 0.02562 * 21 20 19 23 23 C 1.38472 * 119.70974 * 0.12809 * 22 21 20 24 24 O 1.35901 * 119.78708 * 179.97438 * 23 22 21 25 25 C 1.42900 * 117.00041 * 359.97438 * 24 23 22 26 26 C 1.50639 * 122.54486 * 0.74993 * 19 18 17 27 27 H 1.09003 * 109.46793 * 65.12558 * 1 2 3 28 28 H 1.09000 * 109.47117 * 185.12055 * 1 2 3 29 29 H 1.08997 * 109.47558 * 305.12257 * 1 2 3 30 30 H 1.08999 * 109.46888 * 239.99880 * 2 1 3 31 31 H 1.09002 * 109.47034 * 120.00361 * 2 1 3 32 32 H 0.96990 * 120.00265 * 179.97438 * 8 7 5 33 33 H 1.00904 * 110.99765 * 275.41117 * 13 3 2 34 34 H 1.08999 * 109.67910 * 290.14813 * 16 14 13 35 35 H 1.08999 * 109.68223 * 50.66495 * 16 14 13 36 36 H 1.08997 * 109.25534 * 171.31463 * 17 16 14 37 37 H 1.09002 * 109.25053 * 290.73584 * 17 16 14 38 38 H 1.07999 * 119.67073 * 179.78009 * 20 19 18 39 39 H 1.07998 * 120.08323 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.14205 * 180.10223 * 22 21 20 41 41 H 1.09007 * 109.47229 * 300.00414 * 25 24 23 42 42 H 1.08999 * 109.46705 * 60.00206 * 25 24 23 43 43 H 1.08994 * 109.47077 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.25346 * 221.85089 * 26 19 18 45 45 H 1.08997 * 109.25910 * 102.41227 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6317 1.9722 0.8607 5 6 3.5450 1.4431 0.0774 6 1 4.1261 1.8963 -0.7122 7 6 4.1801 0.8653 1.1561 8 7 3.4725 0.3139 2.1179 9 14 6.0457 0.8655 1.2517 10 1 6.6026 1.5438 0.0538 11 1 6.4786 1.5878 2.4749 12 1 6.5390 -0.5342 1.3027 13 7 1.6128 2.1129 -1.2353 14 6 1.4585 3.5583 -1.0235 15 1 1.1359 3.7469 0.0004 16 6 0.4193 4.1158 -2.0034 17 6 0.1054 5.5564 -1.6050 18 6 1.3751 6.3506 -1.4446 19 6 2.6065 5.7563 -1.2887 20 6 3.7386 6.5469 -1.1370 21 6 3.6419 7.9235 -1.1462 22 6 2.4088 8.5248 -1.3071 23 6 1.2771 7.7408 -1.4554 24 8 0.0630 8.3307 -1.6133 25 6 0.0313 9.7593 -1.6155 26 6 2.7897 4.2612 -1.2820 27 1 -0.3633 0.4323 -0.9324 28 1 -0.3633 -1.0236 0.0917 29 1 -0.3634 0.5912 0.8405 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9193 -0.0929 2.8766 33 1 2.2558 1.9246 -1.9898 34 1 0.8215 4.0945 -3.0163 35 1 -0.4890 3.5151 -1.9564 36 1 -0.5112 6.0166 -2.3770 37 1 -0.4407 5.5574 -0.6616 38 1 4.7041 6.0796 -1.0112 39 1 4.5282 8.5292 -1.0279 40 1 2.3277 9.6017 -1.3167 41 1 0.4174 10.1329 -0.6670 42 1 0.6479 10.1351 -2.4321 43 1 -0.9955 10.0997 -1.7488 44 1 3.4976 3.9893 -0.4989 45 1 3.1828 3.9428 -2.2474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190526303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = -33.471011 kcal Electronic energy + Delta-G solvation = -23552.637861 eV Core-core repulsion = 20341.175061 eV Total energy + Delta-G solvation = -3211.462800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40829 -38.28703 -36.55598 -34.68052 -32.29577 -31.51004 -30.68643 -29.28345 -27.53388 -27.22486 -25.82058 -23.17753 -22.71658 -21.75937 -21.33122 -19.65407 -18.90986 -17.59689 -16.54324 -16.21891 -15.82359 -15.45617 -14.91839 -14.50214 -14.39509 -13.66936 -13.54142 -13.37685 -13.18285 -12.96831 -12.66045 -12.52026 -12.08685 -11.98964 -11.61977 -11.52660 -11.35898 -11.21063 -11.09959 -10.97667 -10.87819 -10.66618 -10.48988 -10.25763 -10.20999 -9.97823 -9.53542 -9.31885 -8.94850 -8.39087 -8.34873 -7.97126 -7.23278 -5.98492 -4.10701 1.50203 1.58712 3.25838 3.27612 3.34950 3.36887 3.88949 4.39740 4.81589 4.85268 4.99706 5.01289 5.13087 5.26849 5.28919 5.33971 5.38340 5.43088 5.55612 5.66699 5.78488 5.95764 6.00334 6.01674 6.27895 6.33931 6.38466 6.41648 6.43998 6.51954 6.54844 6.61192 6.75438 6.82088 6.85617 6.94220 6.99470 7.18821 7.21575 7.47251 7.49702 7.62829 7.80192 8.12732 8.17580 8.37296 8.70026 9.02887 9.56675 11.01841 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.004672 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.651114 B = 5991.967221 C = 7214.539372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.683 5.683 14 C 0.101 3.899 15 H 0.072 0.928 16 C -0.108 4.108 17 C -0.067 4.067 18 C -0.104 4.104 19 C -0.023 4.023 20 C -0.157 4.157 21 C -0.088 4.088 22 C -0.221 4.221 23 C 0.120 3.880 24 O -0.315 6.315 25 C 0.029 3.971 26 C -0.110 4.110 27 H 0.047 0.953 28 H 0.023 0.977 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.260 0.740 33 H 0.329 0.671 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 15.034 -7.134 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.310 5.310 14 C -0.010 4.010 15 H 0.090 0.910 16 C -0.146 4.146 17 C -0.105 4.105 18 C -0.105 4.105 19 C -0.024 4.024 20 C -0.175 4.175 21 C -0.106 4.106 22 C -0.240 4.240 23 C 0.076 3.924 24 O -0.229 6.229 25 C -0.066 4.066 26 C -0.148 4.148 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.352 14.687 -6.871 17.075 hybrid contribution 2.397 0.706 0.310 2.518 sum -2.955 15.393 -6.561 16.991 Atomic orbital electron populations 1.21686 0.99060 0.98161 1.00396 1.21499 0.92021 0.99347 1.01595 1.19230 0.92611 0.91088 0.86426 0.95094 1.21930 0.92571 1.37432 1.06119 0.92559 1.24925 0.97777 0.95072 0.95704 1.69886 1.34791 1.37823 1.09753 0.86664 0.86421 0.77749 0.77895 1.19904 1.21132 1.21020 1.60958 1.53725 1.06419 1.09942 1.21402 0.92292 0.88836 0.98510 0.91009 1.21607 1.00061 0.93845 0.99110 1.20261 0.93616 0.94837 1.01783 1.19039 0.95889 0.89923 1.05612 1.19714 0.91261 0.96577 0.94871 1.21163 0.98663 0.93484 1.04206 1.20772 0.96597 0.94754 0.98485 1.21024 0.92963 0.99331 1.10659 1.19011 0.83950 0.92061 0.97418 1.86056 1.27759 1.21260 1.87819 1.22994 1.03411 0.79086 1.01146 1.21440 1.01264 0.89084 1.03002 0.93399 0.95809 0.94544 0.95117 0.89336 0.92996 0.85473 0.92507 0.90983 0.91119 0.91075 0.86056 0.86272 0.86035 0.92898 0.92964 0.88542 0.88683 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.72 37.16 0.36 -2.42 16 2 C -0.11 -2.51 5.44 -26.73 -0.15 -2.65 16 3 C 0.21 5.12 2.01 -68.87 -0.14 4.99 16 4 H 0.03 0.83 7.33 -51.93 -0.38 0.45 16 5 C -0.54 -13.94 7.33 -34.44 -0.25 -14.19 16 6 H 0.06 1.43 7.01 -52.48 -0.37 1.06 16 7 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 8 N -0.88 -24.63 11.30 55.43 0.63 -24.00 16 9 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.68 -13.74 5.54 -100.92 -0.56 -14.30 16 14 C 0.10 1.83 2.50 -67.68 -0.17 1.66 16 15 H 0.07 1.46 7.30 -51.93 -0.38 1.08 16 16 C -0.11 -1.68 5.60 -26.70 -0.15 -1.83 16 17 C -0.07 -1.00 5.28 -28.06 -0.15 -1.14 16 18 C -0.10 -1.63 5.75 -104.47 -0.60 -2.23 16 19 C -0.02 -0.38 5.74 -104.63 -0.60 -0.98 16 20 C -0.16 -2.35 9.60 -39.42 -0.38 -2.73 16 21 C -0.09 -1.16 10.04 -39.71 -0.40 -1.56 16 22 C -0.22 -2.85 9.02 -39.53 -0.36 -3.20 16 23 C 0.12 1.73 6.65 -39.08 -0.26 1.47 16 24 O -0.32 -4.09 9.53 -19.43 -0.19 -4.27 16 25 C 0.03 0.25 9.81 101.05 0.99 1.24 16 26 C -0.11 -1.92 4.47 -28.05 -0.13 -2.05 16 27 H 0.05 0.93 7.85 -51.93 -0.41 0.53 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 2.34 5.99 -51.93 -0.31 2.03 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.33 6.55 7.89 -39.29 -0.31 6.24 16 34 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.97 7.75 -51.93 -0.40 0.57 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.12 1.72 8.05 -52.49 -0.42 1.30 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.24 6.27 -52.49 -0.33 0.91 16 41 H 0.05 0.41 7.65 -51.92 -0.40 0.01 16 42 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.90 6.78 -51.93 -0.35 1.54 16 45 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -27.77 350.25 -9.71 -37.47 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.38 Total: 8.00 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -2.47 Total: -23.92 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.07 Total: -38.30 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.19 Total: -4.27 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.77 -9.71 -37.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190526303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.004 kcal (2) G-P(sol) polarization free energy of solvation -27.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds