Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46952 * 2 1 4 4 H 1.09003 * 109.47210 * 56.88385 * 3 2 1 5 5 C 1.50707 * 109.46841 * 176.87577 * 3 2 1 6 6 H 1.08008 * 119.99547 * 120.00275 * 5 3 2 7 7 C 1.37869 * 120.00184 * 300.00298 * 5 3 2 8 8 N 1.31517 * 120.00500 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99917 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47093 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47096 * 119.99964 * 9 7 5 12 12 H 1.48501 * 109.47431 * 239.99884 * 9 7 5 13 13 N 1.46897 * 109.47369 * 296.88004 * 3 2 1 14 14 C 1.46901 * 110.99873 * 151.45954 * 13 3 2 15 15 H 1.08990 * 109.68110 * 328.01633 * 14 13 3 16 16 C 1.53330 * 109.68082 * 207.49404 * 14 13 3 17 17 C 1.52726 * 108.39153 * 170.42908 * 16 14 13 18 18 C 1.50623 * 110.60296 * 51.02432 * 17 16 14 19 19 C 1.37616 * 122.59199 * 342.28458 * 18 17 16 20 20 C 1.38909 * 119.72467 * 180.40932 * 19 18 17 21 21 C 1.38001 * 120.65868 * 359.74631 * 20 19 18 22 22 C 1.38134 * 119.83563 * 0.02562 * 21 20 19 23 23 C 1.38472 * 119.70974 * 0.12809 * 22 21 20 24 24 O 1.35901 * 119.78708 * 179.97438 * 23 22 21 25 25 C 1.42900 * 117.00041 * 359.97438 * 24 23 22 26 26 C 1.50639 * 122.54486 * 0.74993 * 19 18 17 27 27 H 1.09003 * 109.46793 * 65.12558 * 1 2 3 28 28 H 1.09000 * 109.47117 * 185.12055 * 1 2 3 29 29 H 1.08997 * 109.47558 * 305.12257 * 1 2 3 30 30 H 1.08999 * 109.46888 * 239.99880 * 2 1 3 31 31 H 1.09002 * 109.47034 * 120.00361 * 2 1 3 32 32 H 0.96990 * 120.00265 * 179.97438 * 8 7 5 33 33 H 1.00904 * 110.99765 * 275.41117 * 13 3 2 34 34 H 1.08999 * 109.67910 * 290.14813 * 16 14 13 35 35 H 1.08999 * 109.68223 * 50.66495 * 16 14 13 36 36 H 1.08997 * 109.25534 * 171.31463 * 17 16 14 37 37 H 1.09002 * 109.25053 * 290.73584 * 17 16 14 38 38 H 1.07999 * 119.67073 * 179.78009 * 20 19 18 39 39 H 1.07998 * 120.08323 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.14205 * 180.10223 * 22 21 20 41 41 H 1.09007 * 109.47229 * 300.00414 * 25 24 23 42 42 H 1.08999 * 109.46705 * 60.00206 * 25 24 23 43 43 H 1.08994 * 109.47077 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.25346 * 221.85089 * 26 19 18 45 45 H 1.08997 * 109.25910 * 102.41227 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6317 1.9722 0.8607 5 6 3.5450 1.4431 0.0774 6 1 4.1261 1.8963 -0.7122 7 6 4.1801 0.8653 1.1561 8 7 3.4725 0.3139 2.1179 9 14 6.0457 0.8655 1.2517 10 1 6.6026 1.5438 0.0538 11 1 6.4786 1.5878 2.4749 12 1 6.5390 -0.5342 1.3027 13 7 1.6128 2.1129 -1.2353 14 6 1.4585 3.5583 -1.0235 15 1 1.1359 3.7469 0.0004 16 6 0.4193 4.1158 -2.0034 17 6 0.1054 5.5564 -1.6050 18 6 1.3751 6.3506 -1.4446 19 6 2.6065 5.7563 -1.2887 20 6 3.7386 6.5469 -1.1370 21 6 3.6419 7.9235 -1.1462 22 6 2.4088 8.5248 -1.3071 23 6 1.2771 7.7408 -1.4554 24 8 0.0630 8.3307 -1.6133 25 6 0.0313 9.7593 -1.6155 26 6 2.7897 4.2612 -1.2820 27 1 -0.3633 0.4323 -0.9324 28 1 -0.3633 -1.0236 0.0917 29 1 -0.3634 0.5912 0.8405 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9193 -0.0929 2.8766 33 1 2.2558 1.9246 -1.9898 34 1 0.8215 4.0945 -3.0163 35 1 -0.4890 3.5151 -1.9564 36 1 -0.5112 6.0166 -2.3770 37 1 -0.4407 5.5574 -0.6616 38 1 4.7041 6.0796 -1.0112 39 1 4.5282 8.5292 -1.0279 40 1 2.3277 9.6017 -1.3167 41 1 0.4174 10.1329 -0.6670 42 1 0.6479 10.1351 -2.4321 43 1 -0.9955 10.0997 -1.7488 44 1 3.4976 3.9893 -0.4989 45 1 3.1828 3.9428 -2.2474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190526303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = -48.015863 kcal Electronic energy + Delta-G solvation = -23553.268573 eV Core-core repulsion = 20341.175061 eV Total energy + Delta-G solvation = -3212.093512 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49343 -39.48771 -37.97013 -36.20611 -34.01351 -33.08116 -32.05331 -30.53138 -28.94423 -28.13903 -27.51371 -24.69411 -24.28210 -22.99657 -22.52731 -21.46486 -20.33376 -18.69688 -18.34600 -17.35869 -16.90664 -16.66908 -16.47028 -15.88584 -15.78248 -15.20977 -14.95944 -14.61206 -14.56614 -14.33356 -14.10979 -13.81907 -13.61628 -13.16318 -13.10044 -12.94810 -12.87669 -12.71184 -12.57765 -12.46346 -12.35460 -12.12676 -11.94189 -11.78157 -11.66824 -11.49872 -11.34497 -11.03762 -10.81710 -10.42176 -9.53720 -9.03164 -8.98526 -8.01526 -6.21761 0.39130 0.49053 1.37425 1.40895 1.49771 2.40561 2.42010 2.78190 3.18774 3.59725 3.76736 3.92409 4.05780 4.11249 4.23316 4.29102 4.40335 4.42905 4.49986 4.52006 4.63899 4.68368 4.72585 4.76179 4.78325 4.80642 4.96003 4.98959 5.03738 5.12134 5.20157 5.24011 5.32243 5.43179 5.45781 5.48336 5.56879 5.60454 5.68830 5.76966 5.81226 5.87180 6.15884 6.25136 6.45937 6.50518 6.87794 7.08792 7.49056 8.95634 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.004672 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.651114 B = 5991.967221 C = 7214.539372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.223 3.777 4 H -0.006 1.006 5 C -0.546 4.546 6 H 0.057 0.943 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.944 3.056 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.282 1.282 13 N -0.673 5.673 14 C 0.103 3.897 15 H 0.044 0.956 16 C -0.095 4.095 17 C -0.061 4.061 18 C -0.125 4.125 19 C -0.045 4.045 20 C -0.174 4.174 21 C -0.084 4.084 22 C -0.216 4.216 23 C 0.116 3.884 24 O -0.330 6.330 25 C 0.018 3.982 26 C -0.097 4.097 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.058 0.942 32 H 0.259 0.741 33 H 0.332 0.668 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.063 0.937 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 17.200 -8.478 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.771 3.229 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.208 1.208 13 N -0.301 5.301 14 C -0.008 4.008 15 H 0.062 0.938 16 C -0.134 4.134 17 C -0.098 4.098 18 C -0.125 4.125 19 C -0.046 4.046 20 C -0.193 4.193 21 C -0.102 4.102 22 C -0.235 4.235 23 C 0.071 3.929 24 O -0.244 6.244 25 C -0.076 4.076 26 C -0.136 4.136 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.389 16.872 -8.233 19.532 hybrid contribution 2.360 0.159 0.726 2.475 sum -3.029 17.031 -7.506 18.857 Atomic orbital electron populations 1.21545 0.96536 0.99363 1.00632 1.21365 0.94278 0.98538 0.99962 1.18974 0.91644 0.91281 0.86656 0.98787 1.22218 0.93688 1.36655 1.05959 0.92480 1.25629 1.01734 0.95065 0.95602 1.70021 1.36258 1.38759 1.10260 0.85721 0.81720 0.77623 0.77847 1.19155 1.21215 1.20815 1.60913 1.53211 1.07647 1.08314 1.21381 0.93735 0.87795 0.97910 0.93795 1.21479 0.99006 0.94396 0.98473 1.20193 0.93651 0.94067 1.01883 1.19151 0.95641 0.91148 1.06582 1.19625 0.92419 0.95592 0.96915 1.21292 0.98274 0.94649 1.05069 1.21114 0.98005 0.94068 0.96975 1.21399 0.92179 1.00905 1.08977 1.19099 0.85097 0.91763 0.96942 1.86037 1.27073 1.23779 1.87521 1.23335 1.05378 0.76688 1.02189 1.21180 0.99776 0.90694 1.01918 0.92211 0.93899 0.95353 0.95241 0.92320 0.93139 0.85134 0.91656 0.90724 0.89735 0.91667 0.86077 0.83321 0.82884 0.91976 0.91615 0.86354 0.91872 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.72 71.98 0.70 -4.34 16 2 C -0.10 -4.96 5.44 30.59 0.17 -4.79 16 3 C 0.22 11.06 2.01 44.17 0.09 11.14 16 4 H -0.01 -0.33 7.33 -2.39 -0.02 -0.35 16 5 C -0.55 -28.89 7.33 25.60 0.19 -28.70 16 6 H 0.06 2.95 7.01 -2.91 -0.02 2.93 16 7 C 0.02 1.05 5.30 84.65 0.45 1.50 16 8 N -0.91 -52.45 11.30 21.44 0.24 -52.21 16 9 Si 0.94 43.32 29.54 68.60 2.03 45.35 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 N -0.67 -27.63 5.54 -473.20 -2.62 -30.25 16 14 C 0.10 3.84 2.50 44.94 0.11 3.96 16 15 H 0.04 1.89 7.30 -2.39 -0.02 1.87 16 16 C -0.10 -2.93 5.60 30.61 0.17 -2.76 16 17 C -0.06 -1.75 5.28 29.73 0.16 -1.59 16 18 C -0.12 -3.83 5.75 -19.76 -0.11 -3.94 16 19 C -0.04 -1.47 5.74 -19.87 -0.11 -1.58 16 20 C -0.17 -5.14 9.60 22.37 0.21 -4.92 16 21 C -0.08 -2.00 10.04 22.19 0.22 -1.78 16 22 C -0.22 -4.93 9.02 22.30 0.20 -4.73 16 23 C 0.12 3.12 6.65 22.60 0.15 3.27 16 24 O -0.33 -7.77 9.53 -92.44 -0.88 -8.65 16 25 C 0.02 0.25 9.81 113.37 1.11 1.36 16 26 C -0.10 -3.52 4.47 29.74 0.13 -3.38 16 27 H 0.06 2.28 7.85 -2.39 -0.02 2.26 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 3.20 5.99 -2.39 -0.01 3.19 16 32 H 0.26 14.25 8.31 -92.72 -0.77 13.48 16 33 H 0.33 13.33 7.89 -89.69 -0.71 12.63 16 34 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.08 2.20 7.75 -2.39 -0.02 2.18 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.12 3.44 8.05 -2.91 -0.02 3.42 16 39 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 40 H 0.15 2.45 6.27 -2.91 -0.02 2.44 16 41 H 0.06 0.74 7.65 -2.38 -0.02 0.72 16 42 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 43 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 2.65 6.78 -2.39 -0.02 2.64 16 45 H 0.08 2.64 7.93 -2.39 -0.02 2.62 16 Total: -1.00 -61.04 350.25 2.87 -58.18 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.26 Total: 28.87 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 3.84 Total: -41.29 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.38 Total: -82.46 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.88 Total: -8.65 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -61.04 2.87 -58.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190526303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.161 kcal (2) G-P(sol) polarization free energy of solvation -61.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds