Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46838 * 2 1 4 4 H 1.08997 * 109.47073 * 305.09441 * 3 2 1 5 5 C 1.50704 * 109.47213 * 185.09449 * 3 2 1 6 6 H 1.08002 * 119.99452 * 244.32488 * 5 3 2 7 7 C 1.37879 * 119.99939 * 64.31371 * 5 3 2 8 8 N 1.31512 * 119.99969 * 7.02953 * 7 5 3 9 9 Si 1.86803 * 119.99899 * 187.02046 * 7 5 3 10 10 H 1.48502 * 109.46918 * 270.00563 * 9 7 5 11 11 H 1.48502 * 109.46769 * 30.00378 * 9 7 5 12 12 H 1.48497 * 109.47099 * 150.00613 * 9 7 5 13 13 N 1.46898 * 109.47021 * 65.09326 * 3 2 1 14 14 C 1.46909 * 110.99709 * 200.94584 * 13 3 2 15 15 H 1.08994 * 109.67867 * 329.37191 * 14 13 3 16 16 C 1.53327 * 109.67963 * 208.85053 * 14 13 3 17 17 C 1.52730 * 108.38912 * 170.42820 * 16 14 13 18 18 C 1.50627 * 110.60508 * 51.02491 * 17 16 14 19 19 C 1.37609 * 122.58629 * 342.28258 * 18 17 16 20 20 C 1.38907 * 119.72399 * 180.40147 * 19 18 17 21 21 C 1.38001 * 120.65975 * 359.75825 * 20 19 18 22 22 C 1.38137 * 119.83423 * 0.02562 * 21 20 19 23 23 C 1.38478 * 119.70495 * 0.12802 * 22 21 20 24 24 O 1.35903 * 119.78076 * 179.97438 * 23 22 21 25 25 C 1.42900 * 117.00446 * 0.02562 * 24 23 22 26 26 C 1.50648 * 122.55000 * 0.75279 * 19 18 17 27 27 H 1.08997 * 109.46668 * 64.93076 * 1 2 3 28 28 H 1.08997 * 109.46658 * 184.92936 * 1 2 3 29 29 H 1.09000 * 109.46868 * 304.92780 * 1 2 3 30 30 H 1.09001 * 109.47472 * 240.00162 * 2 1 3 31 31 H 1.09002 * 109.46895 * 119.99548 * 2 1 3 32 32 H 0.96997 * 120.00071 * 355.51977 * 8 7 5 33 33 H 1.00901 * 111.00386 * 76.99588 * 13 3 2 34 34 H 1.09004 * 109.68150 * 290.14971 * 16 14 13 35 35 H 1.08997 * 109.68342 * 50.67089 * 16 14 13 36 36 H 1.09003 * 109.25251 * 171.31841 * 17 16 14 37 37 H 1.08997 * 109.25238 * 290.73640 * 17 16 14 38 38 H 1.08001 * 119.67333 * 179.77893 * 20 19 18 39 39 H 1.08002 * 120.08720 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.14368 * 180.10988 * 22 21 20 41 41 H 1.08996 * 109.46748 * 300.00074 * 25 24 23 42 42 H 1.08997 * 109.47133 * 59.99694 * 25 24 23 43 43 H 1.08995 * 109.47288 * 179.97438 * 25 24 23 44 44 H 1.08995 * 109.25285 * 221.84881 * 26 19 18 45 45 H 1.08998 * 109.25779 * 102.41033 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6040 1.9820 -0.8408 5 6 3.5417 1.4445 -0.1262 6 1 4.1508 1.8253 0.6803 7 6 4.1380 0.9599 -1.2710 8 7 3.3990 0.6251 -2.3061 9 14 5.9955 0.7792 -1.3520 10 1 6.5929 2.0359 -1.8707 11 1 6.5256 0.5034 0.0075 12 1 6.3445 -0.3452 -2.2570 13 7 1.6533 2.0986 1.2562 14 6 1.6674 3.5606 1.1126 15 1 2.4243 3.8505 0.3838 16 6 1.9787 4.2094 2.4665 17 6 2.2229 5.7001 2.2416 18 6 1.0975 6.3075 1.4457 19 6 0.2169 5.5487 0.7092 20 6 -0.7950 6.1719 -0.0100 21 6 -0.9296 7.5452 0.0103 22 6 -0.0509 8.3110 0.7517 23 6 0.9613 7.6942 1.4677 24 8 1.8270 8.4461 2.1972 25 6 1.6317 9.8616 2.1786 26 6 0.2948 4.0453 0.6505 27 1 -0.3632 0.4354 -0.9308 28 1 -0.3632 -1.0239 0.0883 29 1 -0.3633 0.5884 0.8426 30 1 1.8935 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.4317 0.6572 -2.2421 33 1 2.2482 1.8041 2.0160 34 1 1.1337 4.0736 3.1416 35 1 2.8695 3.7518 2.8967 36 1 2.2926 6.2025 3.2065 37 1 3.1590 5.8332 1.6995 38 1 -1.4834 5.5758 -0.5906 39 1 -1.7195 8.0201 -0.5526 40 1 -0.1528 9.3859 0.7726 41 1 1.7173 10.2267 1.1552 42 1 0.6407 10.0968 2.5666 43 1 2.3880 10.3408 2.8002 44 1 0.1237 3.7163 -0.3744 45 1 -0.4730 3.6201 1.2969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190526320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = -37.265788 kcal Electronic energy + Delta-G solvation = -23531.541592 eV Core-core repulsion = 20319.914238 eV Total energy + Delta-G solvation = -3211.627353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46310 -38.32991 -36.71350 -34.93970 -32.34444 -31.46151 -30.96878 -29.25938 -27.76220 -27.24199 -25.32908 -23.40221 -22.82227 -21.77338 -21.48340 -19.70143 -18.94532 -17.66264 -17.00490 -16.31036 -15.88020 -15.53770 -15.11377 -14.49027 -14.05473 -13.75398 -13.60888 -13.54004 -13.17281 -13.08051 -12.77470 -12.67940 -12.20152 -12.02529 -11.98926 -11.64221 -11.57629 -11.36320 -11.17164 -10.92684 -10.75586 -10.63432 -10.49333 -10.27097 -10.14254 -9.98208 -9.70352 -9.53223 -8.90513 -8.44035 -8.27207 -8.02810 -7.25634 -6.29995 -4.08606 1.43804 1.52401 3.23855 3.42093 3.45503 3.60700 3.82546 4.52446 4.73531 4.77357 4.95287 4.99031 5.02318 5.22771 5.25505 5.30962 5.35513 5.37516 5.48846 5.54333 5.75629 5.83264 5.98655 5.99735 6.16138 6.19259 6.24303 6.27177 6.28802 6.36878 6.39653 6.48081 6.54808 6.64388 6.83262 6.86437 6.89961 6.91527 6.95494 7.20428 7.38328 7.42556 7.55753 8.00244 8.12550 8.48777 8.64341 8.85066 9.64882 11.02165 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.004392 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.035443 B = 6373.465565 C = 7096.843266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.202 3.798 4 H 0.025 0.975 5 C -0.625 4.625 6 H 0.047 0.953 7 C 0.026 3.974 8 N -0.910 5.910 9 Si 1.064 2.936 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.284 1.284 13 N -0.680 5.680 14 C 0.094 3.906 15 H 0.056 0.944 16 C -0.118 4.118 17 C -0.067 4.067 18 C -0.102 4.102 19 C -0.026 4.026 20 C -0.157 4.157 21 C -0.087 4.087 22 C -0.220 4.220 23 C 0.122 3.878 24 O -0.315 6.315 25 C 0.029 3.971 26 C -0.068 4.068 27 H 0.036 0.964 28 H 0.028 0.972 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.273 0.727 33 H 0.331 0.669 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 14.561 8.020 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C 0.094 3.906 4 H 0.043 0.957 5 C -0.664 4.664 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.546 5.546 9 Si 0.893 3.107 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.210 1.210 13 N -0.309 5.309 14 C -0.017 4.017 15 H 0.074 0.926 16 C -0.156 4.156 17 C -0.104 4.104 18 C -0.103 4.103 19 C -0.027 4.027 20 C -0.175 4.175 21 C -0.105 4.105 22 C -0.239 4.239 23 C 0.077 3.923 24 O -0.229 6.229 25 C -0.067 4.067 26 C -0.106 4.106 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.092 0.908 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.262 14.011 7.003 16.869 hybrid contribution -0.436 0.983 0.744 1.308 sum -6.698 14.994 7.747 18.158 Atomic orbital electron populations 1.21728 0.98259 0.99001 1.00830 1.21582 0.92949 0.99582 1.00824 1.19275 0.93677 0.90463 0.87215 0.95682 1.22640 0.92385 1.46004 1.05385 0.93461 1.25667 1.06620 0.93576 0.92074 1.70760 1.07824 1.45913 1.30085 0.83626 0.74823 0.76851 0.75443 1.21647 1.21558 1.20993 1.60795 1.57855 1.03815 1.08475 1.21272 0.95240 0.89479 0.95663 0.92568 1.21765 1.01566 0.94315 0.97998 1.20238 0.95870 0.95359 0.98944 1.19008 0.99678 0.89523 1.02061 1.19664 0.93040 0.96234 0.93745 1.21096 0.99776 0.94568 1.02109 1.20770 0.98155 0.93767 0.97827 1.21041 0.98955 0.99899 1.03966 1.19005 0.89995 0.90740 0.92530 1.86063 1.52021 1.18712 1.66072 1.23004 1.02331 0.79205 1.02112 1.20521 0.99159 0.88567 1.02347 0.94461 0.95263 0.92441 0.91903 0.93995 0.91473 0.85247 0.91705 0.91581 0.90974 0.90849 0.86059 0.86154 0.85924 0.92837 0.92925 0.88489 0.90816 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.86 37.16 0.37 -2.39 16 2 C -0.11 -2.54 5.27 -26.73 -0.14 -2.68 16 3 C 0.20 4.87 1.45 -68.86 -0.10 4.77 16 4 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 5 C -0.63 -16.89 8.04 -34.44 -0.28 -17.16 16 6 H 0.05 1.29 7.78 -52.49 -0.41 0.88 16 7 C 0.03 0.73 5.20 -17.82 -0.09 0.64 16 8 N -0.91 -26.82 13.04 55.43 0.72 -26.09 16 9 Si 1.06 25.09 29.91 -169.99 -5.08 20.01 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.68 -13.84 5.44 -100.92 -0.55 -14.39 16 14 C 0.09 1.76 2.29 -67.68 -0.16 1.60 16 15 H 0.06 1.25 7.42 -51.93 -0.39 0.87 16 16 C -0.12 -1.88 5.33 -26.70 -0.14 -2.02 16 17 C -0.07 -1.02 5.28 -28.06 -0.15 -1.16 16 18 C -0.10 -1.60 5.75 -104.47 -0.60 -2.20 16 19 C -0.03 -0.41 5.74 -104.63 -0.60 -1.01 16 20 C -0.16 -2.21 9.60 -39.42 -0.38 -2.59 16 21 C -0.09 -1.09 10.04 -39.71 -0.40 -1.48 16 22 C -0.22 -2.76 9.02 -39.53 -0.36 -3.11 16 23 C 0.12 1.75 6.65 -39.08 -0.26 1.49 16 24 O -0.32 -4.12 9.53 -19.43 -0.19 -4.30 16 25 C 0.03 0.24 9.81 101.05 0.99 1.24 16 26 C -0.07 -1.16 5.22 -28.05 -0.15 -1.31 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.08 7.62 -51.93 -0.40 0.69 16 30 H 0.06 1.60 6.08 -51.93 -0.32 1.28 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.27 8.00 5.82 -40.82 -0.24 7.76 16 33 H 0.33 6.71 7.96 -39.29 -0.31 6.39 16 34 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 36 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.12 1.53 8.05 -52.49 -0.42 1.11 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 1.21 6.27 -52.49 -0.33 0.88 16 41 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 42 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.34 7.86 -51.93 -0.41 0.93 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -29.60 351.77 -9.60 -39.20 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.37 Total: 7.67 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -2.44 Total: -27.40 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.17 Total: -40.48 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.19 Total: -4.30 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.60 -9.60 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190526320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.937 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds