Wall clock time and date at job start Tue Mar 31 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47077 * 2 1 4 4 H 1.08996 * 109.47371 * 54.69425 * 3 2 1 5 5 C 1.50701 * 109.47358 * 174.69646 * 3 2 1 6 6 H 1.08003 * 119.99894 * 116.43130 * 5 3 2 7 7 C 1.37878 * 119.99869 * 296.43560 * 5 3 2 8 8 N 1.31513 * 120.00147 * 352.74023 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 172.74693 * 7 5 3 10 10 H 1.48493 * 109.47285 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47359 * 59.99346 * 9 7 5 12 12 H 1.48505 * 109.46789 * 299.99699 * 9 7 5 13 13 N 1.46901 * 109.47090 * 294.69688 * 3 2 1 14 14 C 1.46901 * 111.00352 * 155.73351 * 13 3 2 15 15 H 1.09002 * 109.67456 * 35.15990 * 14 13 3 16 16 C 1.53321 * 109.68269 * 155.71107 * 14 13 3 17 17 C 1.52726 * 108.37719 * 189.60803 * 16 14 13 18 18 C 1.50631 * 110.58081 * 308.92210 * 17 16 14 19 19 C 1.37610 * 122.59138 * 17.62176 * 18 17 16 20 20 C 1.38911 * 119.71346 * 179.60566 * 19 18 17 21 21 C 1.38002 * 120.65965 * 0.17196 * 20 19 18 22 22 C 1.38126 * 119.83897 * 0.02562 * 21 20 19 23 23 C 1.38475 * 119.70810 * 359.89833 * 22 21 20 24 24 O 1.35895 * 119.78528 * 180.02562 * 23 22 21 25 25 C 1.42902 * 117.00545 * 359.97438 * 24 23 22 26 26 C 1.50646 * 122.55521 * 359.54254 * 19 18 17 27 27 H 1.09007 * 109.47118 * 306.25635 * 1 2 3 28 28 H 1.09002 * 109.47232 * 66.25333 * 1 2 3 29 29 H 1.09000 * 109.47297 * 186.25389 * 1 2 3 30 30 H 1.08996 * 109.47301 * 240.00080 * 2 1 3 31 31 H 1.09003 * 109.47440 * 119.99392 * 2 1 3 32 32 H 0.97003 * 119.99691 * 355.69889 * 8 7 5 33 33 H 1.00895 * 110.99978 * 31.77799 * 13 3 2 34 34 H 1.09006 * 109.68645 * 309.33824 * 16 14 13 35 35 H 1.09000 * 109.68702 * 69.89861 * 16 14 13 36 36 H 1.08998 * 109.25759 * 188.63158 * 17 16 14 37 37 H 1.09005 * 109.25214 * 69.20102 * 17 16 14 38 38 H 1.08003 * 119.66748 * 180.13688 * 20 19 18 39 39 H 1.08004 * 120.07400 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.14335 * 179.87083 * 22 21 20 41 41 H 1.09001 * 109.46547 * 300.00077 * 25 24 23 42 42 H 1.09000 * 109.46458 * 59.99711 * 25 24 23 43 43 H 1.08991 * 109.47402 * 179.97438 * 25 24 23 44 44 H 1.09006 * 109.24765 * 257.27689 * 26 19 18 45 45 H 1.08998 * 109.25321 * 137.85888 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6012 1.9831 0.8386 5 6 3.5413 1.4446 0.1313 6 1 4.1527 1.8357 -0.6684 7 6 4.1341 0.9472 1.2724 8 7 3.3924 0.6036 2.3026 9 14 5.9910 0.7615 1.3552 10 1 6.3748 0.2100 2.6795 11 1 6.6301 2.0888 1.1682 12 1 6.4444 -0.1615 0.2838 13 7 1.6576 2.0971 -1.2583 14 6 1.5948 3.5557 -1.0952 15 1 2.3691 3.8809 -0.4003 16 6 1.7999 4.2365 -2.4536 17 6 1.9698 5.7361 -2.2198 18 6 0.8522 6.2681 -1.3613 19 6 0.0527 5.4511 -0.5952 20 6 -0.9563 6.0068 0.1811 21 6 -1.1678 7.3705 0.1894 22 6 -0.3705 8.1943 -0.5810 23 6 0.6376 7.6451 -1.3553 24 8 1.4233 8.4541 -2.1135 25 6 1.1514 9.8561 -2.0623 26 6 0.2218 3.9546 -0.5587 27 1 -0.3634 0.6078 0.8287 28 1 -0.3634 0.4138 -0.9407 29 1 -0.3634 -1.0215 0.1119 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.4349 0.7580 2.2838 33 1 0.7818 1.7338 -1.6033 34 1 2.6929 3.8362 -2.9338 35 1 0.9311 4.0601 -3.0876 36 1 1.9630 6.2527 -3.1796 37 1 2.9226 5.9167 -1.7219 38 1 -1.5820 5.3650 0.7838 39 1 -1.9548 7.7924 0.7969 40 1 -0.5330 9.2620 -0.5798 41 1 0.1309 10.0407 -2.3978 42 1 1.2671 10.2113 -1.0383 43 1 1.8490 10.3855 -2.7111 44 1 -0.5519 3.4905 -1.1705 45 1 0.1227 3.6067 0.4695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190526339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:17 Heat of formation + Delta-G solvation = -33.797976 kcal Electronic energy + Delta-G solvation = -23544.363449 eV Core-core repulsion = 20332.886471 eV Total energy + Delta-G solvation = -3211.476978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50124 -38.40916 -36.80150 -34.97849 -32.45338 -31.53141 -30.88535 -29.28149 -27.68552 -27.24802 -25.50058 -23.40526 -22.87460 -21.86954 -21.48912 -19.87944 -19.04367 -17.67780 -16.68604 -16.37578 -15.87142 -15.53714 -15.02352 -14.69154 -14.26296 -13.73439 -13.70492 -13.59846 -13.37471 -13.17548 -12.74057 -12.40530 -12.30937 -12.21153 -12.04066 -11.70323 -11.54358 -11.38258 -11.17105 -10.97690 -10.71037 -10.64695 -10.47167 -10.34729 -10.16843 -10.02701 -9.89086 -9.60649 -8.63149 -8.48475 -8.29180 -8.05598 -7.24086 -6.24035 -3.94854 1.39517 1.48836 3.21884 3.49835 3.51398 3.69944 3.78295 4.59239 4.74539 4.74565 4.93171 4.97889 5.01595 5.18231 5.25412 5.28170 5.33192 5.41704 5.44759 5.51564 5.66782 5.82440 5.85757 5.88048 5.94935 5.98822 6.10315 6.18262 6.25117 6.29826 6.32928 6.37401 6.50894 6.64712 6.70931 6.77232 6.78651 6.84637 6.87696 6.97140 7.24051 7.39862 7.45495 8.09828 8.19953 8.53115 8.74881 9.00252 9.74222 11.10314 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.004338 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.376470 B = 6452.837466 C = 7116.596270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.208 3.792 4 H -0.007 1.007 5 C -0.574 4.574 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.672 5.672 14 C 0.097 3.903 15 H 0.086 0.914 16 C -0.105 4.105 17 C -0.069 4.069 18 C -0.099 4.099 19 C -0.026 4.026 20 C -0.158 4.158 21 C -0.088 4.088 22 C -0.218 4.218 23 C 0.122 3.878 24 O -0.314 6.314 25 C 0.029 3.971 26 C -0.110 4.110 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.268 0.732 33 H 0.316 0.684 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.899 14.503 -7.260 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.100 3.900 4 H 0.010 0.990 5 C -0.613 4.613 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.554 5.554 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.302 5.302 14 C -0.014 4.014 15 H 0.105 0.895 16 C -0.143 4.143 17 C -0.107 4.107 18 C -0.100 4.100 19 C -0.027 4.027 20 C -0.176 4.176 21 C -0.106 4.106 22 C -0.237 4.237 23 C 0.077 3.923 24 O -0.228 6.228 25 C -0.067 4.067 26 C -0.149 4.149 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.091 0.909 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.830 13.890 -6.669 16.854 hybrid contribution -2.433 1.014 -0.190 2.643 sum -9.263 14.904 -6.859 18.841 Atomic orbital electron populations 1.21893 0.98967 1.00105 1.00006 1.21830 0.91918 1.00701 1.02333 1.19290 0.96278 0.89228 0.85200 0.98951 1.21975 0.90877 1.44100 1.04353 0.92675 1.25720 1.06588 0.94069 0.92278 1.70804 1.07977 1.45558 1.31068 0.83613 0.74817 0.76420 0.75837 1.21045 1.21646 1.21494 1.60729 1.34889 1.01932 1.32607 1.21457 0.94425 0.89417 0.96093 0.89540 1.21554 1.02154 0.93020 0.97615 1.20292 0.95920 0.96134 0.98332 1.19051 1.00020 0.89435 1.01452 1.19514 0.93548 0.95663 0.93985 1.21109 0.99713 0.95082 1.01720 1.20762 0.98490 0.93418 0.97909 1.21055 0.99635 1.00066 1.02938 1.19003 0.90982 0.90236 0.92037 1.86068 1.55191 1.17949 1.63544 1.23012 1.01856 0.79551 1.02253 1.21362 1.00376 0.90642 1.02496 0.93847 0.93967 0.94029 0.92908 0.90840 0.92051 0.86663 0.90522 0.92700 0.90933 0.90674 0.86222 0.86147 0.85867 0.92927 0.92830 0.88433 0.90900 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.62 37.16 0.36 -2.43 16 2 C -0.13 -2.93 5.21 -26.73 -0.14 -3.07 16 3 C 0.21 5.04 1.49 -68.86 -0.10 4.94 16 4 H -0.01 -0.18 6.65 -51.93 -0.35 -0.53 16 5 C -0.57 -15.95 8.41 -34.44 -0.29 -16.24 16 6 H 0.05 1.58 7.82 -52.48 -0.41 1.17 16 7 C 0.02 0.47 5.19 -17.82 -0.09 0.38 16 8 N -0.92 -27.15 12.78 55.43 0.71 -26.45 16 9 Si 1.06 25.44 29.91 -169.99 -5.08 20.35 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.67 -13.93 6.06 -100.93 -0.61 -14.54 16 14 C 0.10 1.82 2.29 -67.69 -0.15 1.67 16 15 H 0.09 1.92 7.58 -51.93 -0.39 1.52 16 16 C -0.11 -1.71 5.60 -26.71 -0.15 -1.86 16 17 C -0.07 -1.06 5.28 -28.06 -0.15 -1.21 16 18 C -0.10 -1.54 5.75 -104.47 -0.60 -2.14 16 19 C -0.03 -0.41 5.74 -104.63 -0.60 -1.01 16 20 C -0.16 -2.20 9.60 -39.42 -0.38 -2.58 16 21 C -0.09 -1.08 10.04 -39.71 -0.40 -1.48 16 22 C -0.22 -2.71 9.02 -39.53 -0.36 -3.06 16 23 C 0.12 1.74 6.65 -39.08 -0.26 1.48 16 24 O -0.31 -4.07 9.53 -19.41 -0.18 -4.25 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 C -0.11 -1.82 4.97 -28.05 -0.14 -1.96 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.69 6.66 -51.93 -0.35 0.35 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.87 6.16 -51.93 -0.32 1.55 16 32 H 0.27 7.89 6.16 -40.82 -0.25 7.64 16 33 H 0.32 5.92 6.20 -39.29 -0.24 5.68 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.07 1.02 7.76 -51.93 -0.40 0.62 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.12 1.50 8.05 -52.48 -0.42 1.08 16 39 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.12 1.19 6.27 -52.49 -0.33 0.87 16 41 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 42 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.11 7.94 -51.93 -0.41 0.70 16 45 H 0.07 1.32 7.56 -51.93 -0.39 0.93 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -30.39 349.38 -9.61 -40.00 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.24 Total: 6.99 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: -2.46 Total: -27.36 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.10 Total: -40.99 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.18 Total: -4.25 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.39 -9.61 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190526339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.198 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds