Wall clock time and date at job start Tue Mar 31 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47077 * 2 1 4 4 H 1.08996 * 109.47371 * 54.69425 * 3 2 1 5 5 C 1.50701 * 109.47358 * 174.69646 * 3 2 1 6 6 H 1.08003 * 119.99894 * 116.43130 * 5 3 2 7 7 C 1.37878 * 119.99869 * 296.43560 * 5 3 2 8 8 N 1.31513 * 120.00147 * 352.74023 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 172.74693 * 7 5 3 10 10 H 1.48493 * 109.47285 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47359 * 59.99346 * 9 7 5 12 12 H 1.48505 * 109.46789 * 299.99699 * 9 7 5 13 13 N 1.46901 * 109.47090 * 294.69688 * 3 2 1 14 14 C 1.46901 * 111.00352 * 155.73351 * 13 3 2 15 15 H 1.09002 * 109.67456 * 35.15990 * 14 13 3 16 16 C 1.53321 * 109.68269 * 155.71107 * 14 13 3 17 17 C 1.52726 * 108.37719 * 189.60803 * 16 14 13 18 18 C 1.50631 * 110.58081 * 308.92210 * 17 16 14 19 19 C 1.37610 * 122.59138 * 17.62176 * 18 17 16 20 20 C 1.38911 * 119.71346 * 179.60566 * 19 18 17 21 21 C 1.38002 * 120.65965 * 0.17196 * 20 19 18 22 22 C 1.38126 * 119.83897 * 0.02562 * 21 20 19 23 23 C 1.38475 * 119.70810 * 359.89833 * 22 21 20 24 24 O 1.35895 * 119.78528 * 180.02562 * 23 22 21 25 25 C 1.42902 * 117.00545 * 359.97438 * 24 23 22 26 26 C 1.50646 * 122.55521 * 359.54254 * 19 18 17 27 27 H 1.09007 * 109.47118 * 306.25635 * 1 2 3 28 28 H 1.09002 * 109.47232 * 66.25333 * 1 2 3 29 29 H 1.09000 * 109.47297 * 186.25389 * 1 2 3 30 30 H 1.08996 * 109.47301 * 240.00080 * 2 1 3 31 31 H 1.09003 * 109.47440 * 119.99392 * 2 1 3 32 32 H 0.97003 * 119.99691 * 355.69889 * 8 7 5 33 33 H 1.00895 * 110.99978 * 31.77799 * 13 3 2 34 34 H 1.09006 * 109.68645 * 309.33824 * 16 14 13 35 35 H 1.09000 * 109.68702 * 69.89861 * 16 14 13 36 36 H 1.08998 * 109.25759 * 188.63158 * 17 16 14 37 37 H 1.09005 * 109.25214 * 69.20102 * 17 16 14 38 38 H 1.08003 * 119.66748 * 180.13688 * 20 19 18 39 39 H 1.08004 * 120.07400 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.14335 * 179.87083 * 22 21 20 41 41 H 1.09001 * 109.46547 * 300.00077 * 25 24 23 42 42 H 1.09000 * 109.46458 * 59.99711 * 25 24 23 43 43 H 1.08991 * 109.47402 * 179.97438 * 25 24 23 44 44 H 1.09006 * 109.24765 * 257.27689 * 26 19 18 45 45 H 1.08998 * 109.25321 * 137.85888 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6012 1.9831 0.8386 5 6 3.5413 1.4446 0.1313 6 1 4.1527 1.8357 -0.6684 7 6 4.1341 0.9472 1.2724 8 7 3.3924 0.6036 2.3026 9 14 5.9910 0.7615 1.3552 10 1 6.3748 0.2100 2.6795 11 1 6.6301 2.0888 1.1682 12 1 6.4444 -0.1615 0.2838 13 7 1.6576 2.0971 -1.2583 14 6 1.5948 3.5557 -1.0952 15 1 2.3691 3.8809 -0.4003 16 6 1.7999 4.2365 -2.4536 17 6 1.9698 5.7361 -2.2198 18 6 0.8522 6.2681 -1.3613 19 6 0.0527 5.4511 -0.5952 20 6 -0.9563 6.0068 0.1811 21 6 -1.1678 7.3705 0.1894 22 6 -0.3705 8.1943 -0.5810 23 6 0.6376 7.6451 -1.3553 24 8 1.4233 8.4541 -2.1135 25 6 1.1514 9.8561 -2.0623 26 6 0.2218 3.9546 -0.5587 27 1 -0.3634 0.6078 0.8287 28 1 -0.3634 0.4138 -0.9407 29 1 -0.3634 -1.0215 0.1119 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.4349 0.7580 2.2838 33 1 0.7818 1.7338 -1.6033 34 1 2.6929 3.8362 -2.9338 35 1 0.9311 4.0601 -3.0876 36 1 1.9630 6.2527 -3.1796 37 1 2.9226 5.9167 -1.7219 38 1 -1.5820 5.3650 0.7838 39 1 -1.9548 7.7924 0.7969 40 1 -0.5330 9.2620 -0.5798 41 1 0.1309 10.0407 -2.3978 42 1 1.2671 10.2113 -1.0383 43 1 1.8490 10.3855 -2.7111 44 1 -0.5519 3.4905 -1.1705 45 1 0.1227 3.6067 0.4695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190526339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:17 Heat of formation + Delta-G solvation = -51.182570 kcal Electronic energy + Delta-G solvation = -23545.117302 eV Core-core repulsion = 20332.886471 eV Total energy + Delta-G solvation = -3212.230830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56417 -39.63900 -38.22546 -36.46362 -34.20022 -33.08259 -32.20035 -30.49555 -29.03808 -28.10575 -27.31253 -25.03134 -24.38749 -23.09797 -22.62909 -21.75111 -20.38143 -18.77140 -18.64204 -17.46656 -16.86994 -16.67613 -16.45873 -16.09607 -15.66962 -15.61181 -15.10267 -14.78471 -14.56817 -14.34386 -14.27289 -13.97083 -13.74862 -13.63463 -13.21000 -13.07576 -12.77014 -12.69670 -12.54460 -12.44526 -12.36943 -12.11657 -11.93855 -11.90311 -11.75668 -11.71524 -11.44404 -11.19873 -10.63054 -10.44169 -9.60293 -9.07764 -9.04749 -8.48727 -6.21742 0.33095 0.44529 1.53215 1.60336 1.79893 2.36854 2.59514 2.72882 3.21857 3.42462 3.68611 3.81640 3.95010 4.02596 4.15489 4.18042 4.30943 4.33171 4.38701 4.40224 4.42724 4.45986 4.51017 4.56813 4.62857 4.70669 4.73667 4.78331 4.88994 4.90464 5.02392 5.08943 5.13583 5.16847 5.23656 5.30021 5.41918 5.44473 5.50705 5.57772 5.67204 5.81417 6.06788 6.21360 6.46550 6.55503 6.64167 7.00956 7.54445 8.83852 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.004338 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.376470 B = 6452.837466 C = 7116.596270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.215 3.785 4 H -0.035 1.035 5 C -0.587 4.587 6 H 0.039 0.961 7 C -0.030 4.030 8 N -0.937 5.937 9 Si 1.107 2.893 10 H -0.284 1.284 11 H -0.278 1.278 12 H -0.273 1.273 13 N -0.674 5.674 14 C 0.100 3.900 15 H 0.042 0.958 16 C -0.095 4.095 17 C -0.061 4.061 18 C -0.125 4.125 19 C -0.047 4.047 20 C -0.170 4.170 21 C -0.082 4.082 22 C -0.214 4.214 23 C 0.116 3.884 24 O -0.333 6.333 25 C 0.018 3.982 26 C -0.097 4.097 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.258 0.742 33 H 0.330 0.670 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.129 0.871 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.215 16.227 -8.239 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.106 3.894 4 H -0.018 1.018 5 C -0.626 4.626 6 H 0.057 0.943 7 C -0.228 4.228 8 N -0.575 5.575 9 Si 0.930 3.070 10 H -0.210 1.210 11 H -0.204 1.204 12 H -0.199 1.199 13 N -0.304 5.304 14 C -0.011 4.011 15 H 0.060 0.940 16 C -0.133 4.133 17 C -0.099 4.099 18 C -0.126 4.126 19 C -0.047 4.047 20 C -0.189 4.189 21 C -0.100 4.100 22 C -0.233 4.233 23 C 0.070 3.930 24 O -0.246 6.246 25 C -0.076 4.076 26 C -0.136 4.136 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.147 0.853 39 H 0.171 0.829 40 H 0.172 0.828 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.107 0.893 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.167 15.632 -7.673 19.234 hybrid contribution -2.043 0.609 0.086 2.133 sum -10.210 16.241 -7.588 20.629 Atomic orbital electron populations 1.21768 0.95248 1.01656 1.01150 1.21648 0.95236 0.98792 1.00448 1.19055 0.94376 0.90257 0.85713 1.01780 1.22286 0.92906 1.43604 1.03797 0.94254 1.26989 1.10181 0.93598 0.91996 1.70906 1.07600 1.47177 1.31863 0.83051 0.70511 0.77209 0.76189 1.20994 1.20397 1.19861 1.60625 1.35947 1.03090 1.30729 1.21352 0.94640 0.88271 0.96805 0.93959 1.21445 1.02299 0.93560 0.95990 1.20179 0.95476 0.95267 0.98957 1.19129 1.00398 0.90678 1.02357 1.19490 0.94970 0.94838 0.95447 1.21297 0.99546 0.96334 1.01685 1.21154 0.98770 0.92632 0.97462 1.21433 0.98451 1.01713 1.01671 1.19108 0.91523 0.89940 0.92404 1.86043 1.55301 1.19995 1.63304 1.23344 1.03486 0.77260 1.03500 1.21138 0.99003 0.92120 1.01354 0.94143 0.91658 0.91946 0.93355 0.94019 0.93165 0.85118 0.91585 0.91024 0.89614 0.92292 0.85279 0.82925 0.82794 0.91400 0.91934 0.86458 0.89308 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.62 71.98 0.69 -4.33 16 2 C -0.12 -5.67 5.21 30.59 0.16 -5.51 16 3 C 0.21 10.80 1.49 44.17 0.07 10.87 16 4 H -0.04 -1.95 6.65 -2.39 -0.02 -1.97 16 5 C -0.59 -33.85 8.41 25.60 0.22 -33.64 16 6 H 0.04 2.34 7.82 -2.91 -0.02 2.31 16 7 C -0.03 -1.72 5.19 84.66 0.44 -1.29 16 8 N -0.94 -57.32 12.78 21.45 0.27 -57.05 16 9 Si 1.11 52.10 29.91 68.60 2.05 54.15 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.67 -28.50 6.06 -473.22 -2.87 -31.37 16 14 C 0.10 3.89 2.29 44.93 0.10 3.99 16 15 H 0.04 2.01 7.58 -2.39 -0.02 1.99 16 16 C -0.09 -3.12 5.60 30.61 0.17 -2.95 16 17 C -0.06 -1.89 5.28 29.73 0.16 -1.74 16 18 C -0.12 -3.86 5.75 -19.77 -0.11 -3.97 16 19 C -0.05 -1.45 5.74 -19.87 -0.11 -1.57 16 20 C -0.17 -4.53 9.60 22.38 0.21 -4.32 16 21 C -0.08 -1.80 10.04 22.19 0.22 -1.58 16 22 C -0.21 -4.68 9.02 22.30 0.20 -4.48 16 23 C 0.12 3.10 6.65 22.60 0.15 3.25 16 24 O -0.33 -8.03 9.53 -92.37 -0.88 -8.91 16 25 C 0.02 0.25 9.81 113.37 1.11 1.37 16 26 C -0.10 -3.27 4.97 29.74 0.15 -3.13 16 27 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.06 2.02 6.66 -2.39 -0.02 2.00 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 2.18 6.16 -2.39 -0.01 2.17 16 32 H 0.26 15.88 6.16 -92.71 -0.57 15.31 16 33 H 0.33 12.21 6.20 -89.70 -0.56 11.65 16 34 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.07 2.11 8.10 -2.39 -0.02 2.09 16 36 H 0.09 2.37 7.76 -2.39 -0.02 2.36 16 37 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.13 3.08 8.05 -2.91 -0.02 3.05 16 39 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.15 2.34 6.27 -2.91 -0.02 2.32 16 41 H 0.07 0.74 7.65 -2.39 -0.02 0.72 16 42 H 0.06 0.76 7.65 -2.39 -0.02 0.74 16 43 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 2.64 7.94 -2.38 -0.02 2.62 16 45 H 0.06 2.05 7.56 -2.39 -0.02 2.03 16 Total: -1.00 -68.33 349.38 3.02 -65.31 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.61 Total: 26.89 kcal Atomic # 6 Polarization: -52.84 SS G_CDS: 3.82 Total: -49.02 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -2.59 Total: -88.42 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.88 Total: -8.91 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 2.05 Total: 54.15 kcal Total: -68.33 3.02 -65.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190526339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.129 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds