Wall clock time and date at job start Tue Mar 31 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47147 * 2 1 4 4 H 1.08995 * 109.47450 * 306.86051 * 3 2 1 5 5 C 1.50699 * 109.47042 * 186.86286 * 3 2 1 6 6 H 1.08000 * 119.99922 * 244.56043 * 5 3 2 7 7 C 1.37878 * 120.00071 * 64.56133 * 5 3 2 8 8 N 1.31518 * 120.00012 * 192.45081 * 7 5 3 9 9 Si 1.86795 * 119.99924 * 12.45185 * 7 5 3 10 10 H 1.48491 * 109.47190 * 93.96681 * 9 7 5 11 11 H 1.48507 * 109.46863 * 213.96561 * 9 7 5 12 12 H 1.48501 * 109.47395 * 333.96351 * 9 7 5 13 13 N 1.46903 * 109.46911 * 66.86236 * 3 2 1 14 14 C 1.46899 * 111.00170 * 269.89579 * 13 3 2 15 15 H 1.09007 * 109.70943 * 31.00779 * 14 13 3 16 16 C 1.53331 * 109.68530 * 151.55389 * 14 13 3 17 17 C 1.52735 * 108.38710 * 189.60700 * 16 14 13 18 18 C 1.50624 * 110.60114 * 309.01126 * 17 16 14 19 19 C 1.37606 * 122.59399 * 17.54723 * 18 17 16 20 20 C 1.38920 * 119.72010 * 179.56950 * 19 18 17 21 21 C 1.38006 * 120.65834 * 0.16685 * 20 19 18 22 22 C 1.38124 * 119.83269 * 0.02562 * 21 20 19 23 23 C 1.38475 * 119.71283 * 359.76874 * 22 21 20 24 24 O 1.35904 * 119.78339 * 179.97438 * 23 22 21 25 25 C 1.42895 * 117.00236 * 0.25516 * 24 23 22 26 26 C 1.50646 * 122.55822 * 359.48912 * 19 18 17 27 27 H 1.09003 * 109.46559 * 302.44841 * 1 2 3 28 28 H 1.08998 * 109.47102 * 62.44181 * 1 2 3 29 29 H 1.08996 * 109.46706 * 182.44762 * 1 2 3 30 30 H 1.09001 * 109.46841 * 240.00274 * 2 1 3 31 31 H 1.08998 * 109.47498 * 120.00109 * 2 1 3 32 32 H 0.96995 * 120.00186 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99502 * 145.94365 * 13 3 2 34 34 H 1.08998 * 109.68247 * 309.33622 * 16 14 13 35 35 H 1.09002 * 109.67709 * 69.88894 * 16 14 13 36 36 H 1.09001 * 109.24418 * 188.72652 * 17 16 14 37 37 H 1.08995 * 109.24553 * 69.30269 * 17 16 14 38 38 H 1.08000 * 119.66628 * 180.19192 * 20 19 18 39 39 H 1.07997 * 120.08048 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.14672 * 179.89851 * 22 21 20 41 41 H 1.09003 * 109.47483 * 179.97438 * 25 24 23 42 42 H 1.09001 * 109.46965 * 299.99282 * 25 24 23 43 43 H 1.08995 * 109.47287 * 59.99373 * 25 24 23 44 44 H 1.08998 * 109.25531 * 137.99974 * 26 19 18 45 45 H 1.08993 * 109.25603 * 257.43475 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5800 1.9906 -0.8222 5 6 3.5374 1.4459 -0.1698 6 1 4.1701 1.8149 0.6240 7 6 4.0998 0.9779 -1.3384 8 7 5.3936 0.7497 -1.4003 9 14 3.0242 0.6679 -2.8338 10 1 3.0283 1.8708 -3.7045 11 1 3.5537 -0.4939 -3.5922 12 1 1.6354 0.3802 -2.3936 13 7 1.6902 2.0855 1.2736 14 6 0.3769 2.7385 1.1904 15 1 -0.2615 2.1930 0.4953 16 6 -0.2752 2.7658 2.5779 17 6 -1.7231 3.2258 2.4208 18 6 -1.7907 4.4985 1.6180 19 6 -0.7506 4.9333 0.8290 20 6 -0.8807 6.1125 0.1062 21 6 -2.0420 6.8550 0.1740 22 6 -3.0873 6.4247 0.9678 23 6 -2.9637 5.2477 1.6867 24 8 -3.9911 4.8233 2.4686 25 6 -5.1654 5.6371 2.4951 26 6 0.5477 4.1784 0.7105 27 1 -0.3632 0.5514 0.8673 28 1 -0.3633 0.4754 -0.9111 29 1 -0.3632 -1.0267 0.0439 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.7893 0.4208 -2.2226 33 1 2.4030 2.7417 1.5551 34 1 -0.2525 1.7670 3.0139 35 1 0.2628 3.4607 3.2227 36 1 -2.1539 3.3996 3.4069 37 1 -2.2937 2.4491 1.9118 38 1 -0.0649 6.4513 -0.5153 39 1 -2.1329 7.7706 -0.3915 40 1 -3.9978 7.0027 1.0259 41 1 -5.9058 5.1854 3.1554 42 1 -4.9101 6.6314 2.8614 43 1 -5.5762 5.7151 1.4886 44 1 0.8674 4.1744 -0.3316 45 1 1.3071 4.6718 1.3169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190526357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:19 Heat of formation + Delta-G solvation = -22.083996 kcal Electronic energy + Delta-G solvation = -23650.357988 eV Core-core repulsion = 20439.388966 eV Total energy + Delta-G solvation = -3210.969021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57113 -38.52182 -36.88990 -34.78792 -32.39701 -31.78711 -30.83803 -29.58794 -28.06329 -27.40714 -26.13985 -23.37929 -22.57520 -21.89717 -21.52843 -19.80811 -19.13141 -17.72765 -16.86859 -16.36433 -15.92655 -15.63389 -15.38288 -14.57755 -14.41173 -13.82465 -13.70659 -13.61028 -13.36518 -12.95784 -12.88599 -12.59770 -12.52830 -12.19515 -11.98827 -11.88985 -11.62362 -11.53318 -11.45952 -11.04373 -10.93826 -10.83473 -10.75122 -10.34793 -10.14872 -9.87915 -9.82418 -9.22531 -9.03986 -8.55259 -8.47933 -8.11254 -7.41422 -6.10947 -4.07370 1.34167 1.43597 3.15870 3.27449 3.37669 3.41498 3.73110 4.41386 4.68631 4.68939 4.86418 4.92300 4.96798 5.12334 5.17833 5.21511 5.22992 5.27028 5.38811 5.45629 5.59795 5.76633 5.77279 5.82244 6.03475 6.07202 6.08385 6.18739 6.22202 6.23581 6.27251 6.29803 6.45664 6.58009 6.62219 6.72809 6.75599 6.79371 6.80863 7.03241 7.09682 7.34106 7.47613 7.69140 8.01023 8.40288 8.64923 8.97687 9.54591 11.02020 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023913 B = 0.004178 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.622857 B = 6699.983757 C = 7095.579647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C 0.192 3.808 4 H -0.001 1.001 5 C -0.526 4.526 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.861 3.139 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.247 1.247 13 N -0.672 5.672 14 C 0.078 3.922 15 H 0.085 0.915 16 C -0.107 4.107 17 C -0.069 4.069 18 C -0.102 4.102 19 C -0.027 4.027 20 C -0.158 4.158 21 C -0.087 4.087 22 C -0.219 4.219 23 C 0.122 3.878 24 O -0.315 6.315 25 C 0.028 3.972 26 C -0.111 4.111 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.263 0.737 33 H 0.339 0.661 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.205 10.333 5.745 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.149 4.149 3 C 0.083 3.917 4 H 0.017 0.983 5 C -0.564 4.564 6 H 0.095 0.905 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.688 3.312 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.171 1.171 13 N -0.301 5.301 14 C -0.032 4.032 15 H 0.103 0.897 16 C -0.145 4.145 17 C -0.107 4.107 18 C -0.103 4.103 19 C -0.028 4.028 20 C -0.176 4.176 21 C -0.105 4.105 22 C -0.237 4.237 23 C 0.077 3.923 24 O -0.228 6.228 25 C -0.067 4.067 26 C -0.150 4.150 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.158 0.842 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.116 0.884 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.295 9.488 6.030 22.331 hybrid contribution -0.394 1.039 -1.731 2.057 sum -19.689 10.527 4.299 22.737 Atomic orbital electron populations 1.22057 0.98870 0.99840 1.00729 1.21887 0.92554 0.99512 1.00938 1.19452 0.95689 0.90729 0.85833 0.98341 1.21141 0.89506 1.43151 1.02564 0.90549 1.24895 0.94732 0.94333 0.98659 1.69958 1.11153 1.44649 1.27328 0.87254 0.82713 0.77913 0.83308 1.20942 1.21345 1.17133 1.60632 1.02043 1.34241 1.33212 1.21854 0.93763 0.91226 0.96404 0.89685 1.21580 0.93639 1.01757 0.97527 1.20291 0.97971 0.93436 0.98966 1.19025 0.91449 0.98245 1.01546 1.19572 0.94939 0.94352 0.93897 1.21151 0.98478 0.95916 1.02056 1.20782 0.92938 0.99157 0.97608 1.21060 1.01155 0.98148 1.03376 1.19010 0.88132 0.93260 0.91902 1.86062 1.23601 1.49660 1.63482 1.23011 0.85999 0.95522 1.02148 1.21374 0.93555 0.97168 1.02905 0.91962 0.94409 0.94556 0.93086 0.92174 0.92695 0.84218 0.90626 0.92149 0.90848 0.91015 0.86026 0.86125 0.85889 0.88438 0.92876 0.92864 0.90378 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 8.66 37.16 0.32 -2.59 16 2 C -0.11 -2.43 4.78 -26.73 -0.13 -2.55 16 3 C 0.19 4.39 1.68 -68.86 -0.12 4.27 16 4 H 0.00 -0.02 6.29 -51.93 -0.33 -0.35 16 5 C -0.53 -14.34 9.02 -34.44 -0.31 -14.65 16 6 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 7 C 0.08 2.16 5.36 -17.82 -0.10 2.07 16 8 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 9 Si 0.86 21.06 25.72 -169.99 -4.37 16.68 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.25 -5.71 5.34 56.52 0.30 -5.41 16 13 N -0.67 -13.15 6.02 -100.91 -0.61 -13.76 16 14 C 0.08 1.29 1.28 -67.68 -0.09 1.21 16 15 H 0.09 1.49 5.06 -51.93 -0.26 1.23 16 16 C -0.11 -1.54 5.52 -26.70 -0.15 -1.69 16 17 C -0.07 -0.93 5.27 -28.06 -0.15 -1.08 16 18 C -0.10 -1.45 5.75 -104.47 -0.60 -2.05 16 19 C -0.03 -0.39 5.74 -104.63 -0.60 -0.99 16 20 C -0.16 -2.08 9.60 -39.41 -0.38 -2.46 16 21 C -0.09 -1.01 10.04 -39.71 -0.40 -1.41 16 22 C -0.22 -2.52 9.02 -39.54 -0.36 -2.88 16 23 C 0.12 1.59 6.65 -39.08 -0.26 1.33 16 24 O -0.31 -3.72 9.53 -19.44 -0.19 -3.91 16 25 C 0.03 0.21 9.81 101.05 0.99 1.20 16 26 C -0.11 -1.73 5.03 -28.04 -0.14 -1.87 16 27 H 0.06 1.08 5.57 -51.93 -0.29 0.79 16 28 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 1.18 4.73 -51.93 -0.25 0.94 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.34 6.70 7.68 -39.29 -0.30 6.40 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.86 8.10 -51.93 -0.42 0.43 16 36 H 0.07 0.93 7.76 -51.93 -0.40 0.53 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.12 1.46 8.05 -52.49 -0.42 1.04 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.10 6.27 -52.49 -0.33 0.77 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.35 7.64 -51.93 -0.40 -0.05 16 43 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 44 H 0.08 1.30 7.93 -51.93 -0.41 0.89 16 45 H 0.08 1.21 7.92 -51.93 -0.41 0.80 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -30.08 341.66 -8.92 -39.00 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.22 Total: 7.16 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -2.45 Total: -24.13 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.17 Total: -39.95 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.19 Total: -3.91 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.37 Total: 16.68 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.08 -8.92 -39.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190526357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.912 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds