Wall clock time and date at job start Tue Mar 31 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47147 * 2 1 4 4 H 1.08995 * 109.47450 * 306.86051 * 3 2 1 5 5 C 1.50699 * 109.47042 * 186.86286 * 3 2 1 6 6 H 1.08000 * 119.99922 * 244.56043 * 5 3 2 7 7 C 1.37878 * 120.00071 * 64.56133 * 5 3 2 8 8 N 1.31518 * 120.00012 * 192.45081 * 7 5 3 9 9 Si 1.86795 * 119.99924 * 12.45185 * 7 5 3 10 10 H 1.48491 * 109.47190 * 93.96681 * 9 7 5 11 11 H 1.48507 * 109.46863 * 213.96561 * 9 7 5 12 12 H 1.48501 * 109.47395 * 333.96351 * 9 7 5 13 13 N 1.46903 * 109.46911 * 66.86236 * 3 2 1 14 14 C 1.46899 * 111.00170 * 269.89579 * 13 3 2 15 15 H 1.09007 * 109.70943 * 31.00779 * 14 13 3 16 16 C 1.53331 * 109.68530 * 151.55389 * 14 13 3 17 17 C 1.52735 * 108.38710 * 189.60700 * 16 14 13 18 18 C 1.50624 * 110.60114 * 309.01126 * 17 16 14 19 19 C 1.37606 * 122.59399 * 17.54723 * 18 17 16 20 20 C 1.38920 * 119.72010 * 179.56950 * 19 18 17 21 21 C 1.38006 * 120.65834 * 0.16685 * 20 19 18 22 22 C 1.38124 * 119.83269 * 0.02562 * 21 20 19 23 23 C 1.38475 * 119.71283 * 359.76874 * 22 21 20 24 24 O 1.35904 * 119.78339 * 179.97438 * 23 22 21 25 25 C 1.42895 * 117.00236 * 0.25516 * 24 23 22 26 26 C 1.50646 * 122.55822 * 359.48912 * 19 18 17 27 27 H 1.09003 * 109.46559 * 302.44841 * 1 2 3 28 28 H 1.08998 * 109.47102 * 62.44181 * 1 2 3 29 29 H 1.08996 * 109.46706 * 182.44762 * 1 2 3 30 30 H 1.09001 * 109.46841 * 240.00274 * 2 1 3 31 31 H 1.08998 * 109.47498 * 120.00109 * 2 1 3 32 32 H 0.96995 * 120.00186 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99502 * 145.94365 * 13 3 2 34 34 H 1.08998 * 109.68247 * 309.33622 * 16 14 13 35 35 H 1.09002 * 109.67709 * 69.88894 * 16 14 13 36 36 H 1.09001 * 109.24418 * 188.72652 * 17 16 14 37 37 H 1.08995 * 109.24553 * 69.30269 * 17 16 14 38 38 H 1.08000 * 119.66628 * 180.19192 * 20 19 18 39 39 H 1.07997 * 120.08048 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.14672 * 179.89851 * 22 21 20 41 41 H 1.09003 * 109.47483 * 179.97438 * 25 24 23 42 42 H 1.09001 * 109.46965 * 299.99282 * 25 24 23 43 43 H 1.08995 * 109.47287 * 59.99373 * 25 24 23 44 44 H 1.08998 * 109.25531 * 137.99974 * 26 19 18 45 45 H 1.08993 * 109.25603 * 257.43475 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5800 1.9906 -0.8222 5 6 3.5374 1.4459 -0.1698 6 1 4.1701 1.8149 0.6240 7 6 4.0998 0.9779 -1.3384 8 7 5.3936 0.7497 -1.4003 9 14 3.0242 0.6679 -2.8338 10 1 3.0283 1.8708 -3.7045 11 1 3.5537 -0.4939 -3.5922 12 1 1.6354 0.3802 -2.3936 13 7 1.6902 2.0855 1.2736 14 6 0.3769 2.7385 1.1904 15 1 -0.2615 2.1930 0.4953 16 6 -0.2752 2.7658 2.5779 17 6 -1.7231 3.2258 2.4208 18 6 -1.7907 4.4985 1.6180 19 6 -0.7506 4.9333 0.8290 20 6 -0.8807 6.1125 0.1062 21 6 -2.0420 6.8550 0.1740 22 6 -3.0873 6.4247 0.9678 23 6 -2.9637 5.2477 1.6867 24 8 -3.9911 4.8233 2.4686 25 6 -5.1654 5.6371 2.4951 26 6 0.5477 4.1784 0.7105 27 1 -0.3632 0.5514 0.8673 28 1 -0.3633 0.4754 -0.9111 29 1 -0.3632 -1.0267 0.0439 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.7893 0.4208 -2.2226 33 1 2.4030 2.7417 1.5551 34 1 -0.2525 1.7670 3.0139 35 1 0.2628 3.4607 3.2227 36 1 -2.1539 3.3996 3.4069 37 1 -2.2937 2.4491 1.9118 38 1 -0.0649 6.4513 -0.5153 39 1 -2.1329 7.7706 -0.3915 40 1 -3.9978 7.0027 1.0259 41 1 -5.9058 5.1854 3.1554 42 1 -4.9101 6.6314 2.8614 43 1 -5.5762 5.7151 1.4886 44 1 0.8674 4.1744 -0.3316 45 1 1.3071 4.6718 1.3169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190526357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:19 Heat of formation + Delta-G solvation = -40.388961 kcal Electronic energy + Delta-G solvation = -23651.151751 eV Core-core repulsion = 20439.388966 eV Total energy + Delta-G solvation = -3211.762784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53283 -39.64169 -38.15048 -36.17081 -34.24534 -33.20247 -32.06719 -30.79949 -29.41031 -28.22471 -27.59465 -24.68362 -24.16357 -23.01152 -22.57748 -21.51184 -20.43719 -18.82362 -18.58310 -17.46146 -17.10732 -16.71646 -16.48090 -16.03624 -15.59280 -15.30374 -15.08831 -14.80243 -14.58181 -14.37815 -14.18147 -14.03760 -13.81129 -13.67161 -13.34599 -13.01722 -12.80092 -12.74815 -12.64769 -12.56207 -12.40692 -12.15733 -11.89530 -11.78391 -11.59661 -11.40885 -11.31796 -11.02312 -10.95057 -10.59575 -9.55842 -9.03983 -9.02430 -8.30910 -6.31149 0.37353 0.48378 1.32107 1.36744 1.47004 2.34472 2.40203 2.76896 3.04197 3.45924 3.73745 3.88239 3.99941 4.07252 4.19142 4.22735 4.34884 4.42839 4.46747 4.47462 4.49531 4.52342 4.62086 4.65933 4.69251 4.76448 4.77048 4.86317 4.94052 4.96375 5.05948 5.18817 5.21847 5.27094 5.30111 5.32604 5.44495 5.50614 5.56094 5.61392 5.72931 5.83004 5.84526 6.06058 6.49813 6.56570 6.72625 6.90484 7.35289 8.85640 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023913 B = 0.004178 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.622857 B = 6699.983757 C = 7095.579647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.200 3.800 4 H -0.004 1.004 5 C -0.527 4.527 6 H 0.038 0.962 7 C 0.021 3.979 8 N -0.942 5.942 9 Si 0.922 3.078 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.224 1.224 13 N -0.673 5.673 14 C 0.080 3.920 15 H 0.080 0.920 16 C -0.098 4.098 17 C -0.061 4.061 18 C -0.122 4.122 19 C -0.044 4.044 20 C -0.173 4.173 21 C -0.084 4.084 22 C -0.216 4.216 23 C 0.116 3.884 24 O -0.330 6.330 25 C 0.019 3.981 26 C -0.105 4.105 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.335 0.665 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.117 0.883 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.802 11.280 5.583 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.090 3.910 4 H 0.013 0.987 5 C -0.565 4.565 6 H 0.057 0.943 7 C -0.177 4.177 8 N -0.582 5.582 9 Si 0.747 3.253 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.147 1.147 13 N -0.302 5.302 14 C -0.030 4.030 15 H 0.098 0.902 16 C -0.136 4.136 17 C -0.098 4.098 18 C -0.123 4.123 19 C -0.045 4.045 20 C -0.191 4.191 21 C -0.102 4.102 22 C -0.234 4.234 23 C 0.070 3.930 24 O -0.244 6.244 25 C -0.076 4.076 26 C -0.143 4.143 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.136 0.864 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.928 10.445 5.889 25.874 hybrid contribution 0.702 0.833 -1.568 1.909 sum -22.226 11.279 4.321 25.295 Atomic orbital electron populations 1.21961 0.95720 1.01563 1.01392 1.21804 0.95354 0.98031 0.99812 1.19274 0.92586 0.91951 0.87191 0.98658 1.21448 0.91783 1.41908 1.01411 0.94342 1.25716 0.95887 0.94366 1.01752 1.70094 1.13238 1.46603 1.28272 0.86264 0.82039 0.77725 0.79310 1.20614 1.21271 1.14692 1.60626 1.03343 1.34872 1.31335 1.21874 0.91824 0.91474 0.97795 0.90196 1.21480 0.94360 1.01831 0.95913 1.20207 0.96810 0.93375 0.99439 1.19132 0.92174 0.98859 1.02086 1.19484 0.94498 0.95161 0.95344 1.21308 0.99569 0.95912 1.02297 1.21120 0.92095 0.99691 0.97278 1.21414 1.02096 0.97664 1.02227 1.19112 0.88176 0.93523 0.92151 1.86041 1.24362 1.50854 1.63127 1.23327 0.84892 0.95926 1.03430 1.21205 0.94651 0.96759 1.01701 0.90993 0.94048 0.92366 0.94372 0.93237 0.92621 0.84714 0.90648 0.92131 0.89995 0.90930 0.85657 0.83347 0.83048 0.86445 0.91738 0.91860 0.92022 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 8.66 71.98 0.62 -4.53 16 2 C -0.11 -4.80 4.78 30.60 0.15 -4.66 16 3 C 0.20 9.17 1.68 44.17 0.07 9.25 16 4 H 0.00 -0.19 6.29 -2.39 -0.02 -0.21 16 5 C -0.53 -29.73 9.02 25.60 0.23 -29.50 16 6 H 0.04 2.40 7.83 -2.91 -0.02 2.38 16 7 C 0.02 1.22 5.36 84.65 0.45 1.67 16 8 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 9 Si 0.92 43.77 25.72 68.60 1.76 45.53 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.22 -9.71 5.34 99.48 0.53 -9.18 16 13 N -0.67 -26.62 6.02 -473.19 -2.85 -29.47 16 14 C 0.08 2.62 1.28 44.94 0.06 2.68 16 15 H 0.08 2.71 5.06 -2.38 -0.01 2.70 16 16 C -0.10 -2.72 5.52 30.62 0.17 -2.55 16 17 C -0.06 -1.54 5.27 29.74 0.16 -1.39 16 18 C -0.12 -3.28 5.75 -19.77 -0.11 -3.39 16 19 C -0.04 -1.24 5.74 -19.87 -0.11 -1.36 16 20 C -0.17 -4.32 9.60 22.38 0.21 -4.10 16 21 C -0.08 -1.72 10.04 22.19 0.22 -1.49 16 22 C -0.22 -4.28 9.02 22.30 0.20 -4.07 16 23 C 0.12 2.75 6.65 22.60 0.15 2.90 16 24 O -0.33 -6.92 9.53 -92.47 -0.88 -7.80 16 25 C 0.02 0.21 9.81 113.37 1.11 1.33 16 26 C -0.10 -3.26 5.03 29.74 0.15 -3.11 16 27 H 0.07 2.34 5.57 -2.39 -0.01 2.32 16 28 H 0.04 1.39 8.11 -2.39 -0.02 1.37 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.72 4.73 -2.39 -0.01 1.71 16 31 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 33 H 0.33 13.70 7.68 -89.69 -0.69 13.02 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.08 1.93 7.76 -2.39 -0.02 1.91 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.13 2.92 8.05 -2.91 -0.02 2.90 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.15 2.06 6.27 -2.91 -0.02 2.04 16 41 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.61 7.64 -2.39 -0.02 0.59 16 43 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 44 H 0.06 2.08 7.93 -2.39 -0.02 2.07 16 45 H 0.08 2.40 7.92 -2.39 -0.02 2.38 16 Total: -1.00 -66.16 341.66 2.18 -63.97 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.12 Total: 28.58 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 3.73 Total: -42.33 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -2.55 Total: -87.96 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.88 Total: -7.80 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.76 Total: 45.53 kcal Total: -66.16 2.18 -63.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190526357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.584 kcal (2) G-P(sol) polarization free energy of solvation -66.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds