Wall clock time and date at job start Tue Mar 31 2020 06:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47340 * 2 1 4 4 N 1.46499 * 109.47571 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00000 * 269.49884 * 4 3 2 6 6 H 1.08000 * 120.00227 * 325.90483 * 5 4 3 7 7 C 1.38814 * 119.99703 * 145.90372 * 5 4 3 8 8 N 1.31620 * 120.00236 * 336.77149 * 7 5 4 9 9 Si 1.86806 * 119.99689 * 156.77157 * 7 5 4 10 10 H 1.48499 * 109.46987 * 59.99908 * 9 7 5 11 11 H 1.48500 * 109.47137 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47161 * 299.99921 * 9 7 5 13 13 C 1.46502 * 119.99770 * 89.49097 * 4 3 2 14 14 C 1.50707 * 109.46777 * 90.00653 * 13 4 3 15 15 C 1.38264 * 119.94661 * 89.99374 * 14 13 4 16 16 C 1.38139 * 120.05732 * 180.27341 * 15 14 13 17 17 C 1.38734 * 119.94367 * 359.45852 * 16 15 14 18 18 O 1.35903 * 120.05719 * 180.24870 * 17 16 15 19 19 C 1.42897 * 116.99948 * 0.27605 * 18 17 16 20 20 C 1.52998 * 109.47319 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.50128 * 243.74817 * 20 19 18 22 22 C 1.53000 * 117.50109 * 175.08344 * 20 19 18 23 23 C 1.38736 * 119.88831 * 0.52295 * 17 16 15 24 24 C 1.38147 * 119.94046 * 359.74937 * 23 17 16 25 25 H 1.09008 * 109.47104 * 59.99924 * 1 2 3 26 26 H 1.09002 * 109.47164 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47238 * 300.00224 * 1 2 3 28 28 H 1.09007 * 109.47397 * 240.00307 * 2 1 3 29 29 H 1.08995 * 109.47015 * 119.99821 * 2 1 3 30 30 H 1.09007 * 109.47139 * 59.99721 * 3 2 1 31 31 H 1.09008 * 109.47084 * 300.00088 * 3 2 1 32 32 H 0.97005 * 119.99654 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47517 * 330.00662 * 13 4 3 34 34 H 1.08993 * 109.47114 * 209.99966 * 13 4 3 35 35 H 1.08008 * 119.96669 * 0.02562 * 15 14 13 36 36 H 1.08004 * 120.02895 * 179.70694 * 16 15 14 37 37 H 1.09000 * 109.47258 * 300.00261 * 19 18 17 38 38 H 1.09002 * 109.47247 * 59.99770 * 19 18 17 39 39 H 1.09002 * 115.54866 * 29.41360 * 20 19 18 40 40 H 1.09005 * 117.49558 * 359.97438 * 21 20 19 41 41 H 1.08998 * 117.49889 * 145.01991 * 21 20 19 42 42 H 1.08993 * 117.50114 * 214.98254 * 22 20 19 43 43 H 1.09002 * 117.49935 * 0.02562 * 22 20 19 44 44 H 1.07992 * 120.02865 * 179.77176 * 23 17 16 45 45 H 1.08001 * 119.96807 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4531 1.1867 6 1 3.7881 1.9850 2.0368 7 6 5.3983 0.7802 1.2965 8 7 5.6758 -0.2125 0.4779 9 14 6.6318 1.2835 2.6060 10 1 6.0158 1.1359 3.9491 11 1 7.8334 0.4158 2.5139 12 1 7.0270 2.6994 2.3957 13 6 4.2380 1.4311 -1.2678 14 6 4.4894 2.8480 -1.7154 15 6 5.6418 3.5023 -1.3209 16 6 5.8718 4.8030 -1.7252 17 6 4.9508 5.4490 -2.5370 18 8 5.1772 6.7269 -2.9403 19 6 6.3876 7.3427 -2.4956 20 6 6.4671 8.7678 -3.0465 21 6 7.6067 9.0880 -4.0160 22 6 7.6389 9.6382 -2.5879 23 6 3.7954 4.7902 -2.9319 24 6 3.5674 3.4914 -2.5202 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 6.5209 -0.6825 0.5545 33 1 3.6493 0.9105 -2.0231 34 1 5.1903 0.9185 -1.1325 35 1 6.3608 2.9973 -0.6928 36 1 6.7699 5.3153 -1.4129 37 1 6.4011 7.3726 -1.4061 38 1 7.2411 6.7670 -2.8538 39 1 5.5097 9.2609 -3.2149 40 1 8.3000 8.2833 -4.2610 41 1 7.3990 9.7919 -4.8219 42 1 7.4525 10.7038 -2.4549 43 1 8.3534 9.1954 -1.8940 44 1 3.0752 5.2922 -3.5607 45 1 2.6679 2.9783 -2.8269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191267910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:41 Heat of formation + Delta-G solvation = 19.921519 kcal Electronic energy + Delta-G solvation = -22735.581756 eV Core-core repulsion = 19526.434230 eV Total energy + Delta-G solvation = -3209.147526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.77237 -37.95643 -36.80263 -35.60228 -32.88792 -31.13167 -30.48899 -29.58697 -27.60571 -25.53771 -25.12711 -22.66687 -22.39910 -22.10252 -20.84442 -20.44627 -19.72336 -17.84692 -16.81272 -16.24684 -15.61305 -15.12459 -14.75616 -14.51988 -14.30657 -14.20816 -13.86099 -13.54642 -13.16880 -12.92642 -12.81588 -12.51686 -12.39165 -11.81382 -11.80771 -11.41445 -11.31434 -11.13767 -10.94978 -10.77394 -10.76052 -10.72544 -10.42580 -10.37748 -10.25797 -10.07212 -9.86789 -9.86195 -9.63885 -8.51071 -8.39029 -7.47173 -6.62556 -5.80698 -3.31780 1.95190 2.08555 3.21221 3.34858 3.41325 3.44045 3.62145 4.36391 4.51010 4.53109 4.62155 4.78152 5.04453 5.21730 5.29986 5.35187 5.37415 5.44784 5.47503 5.57893 5.60163 5.77709 5.82219 5.82690 5.85993 5.92427 6.02132 6.11355 6.17435 6.28947 6.33183 6.48881 6.55816 6.64207 6.71953 6.79434 6.88566 7.08268 7.09230 7.28043 7.35876 7.45508 7.72560 7.81336 7.87606 8.49532 9.16816 9.81028 10.37868 11.19686 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.004084 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.690232 B = 6853.663880 C = 8201.026595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.149 3.851 4 N -0.577 5.577 5 C -0.251 4.251 6 H 0.060 0.940 7 C 0.010 3.990 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.283 1.283 13 C 0.174 3.826 14 C -0.101 4.101 15 C -0.060 4.060 16 C -0.210 4.210 17 C 0.102 3.898 18 O -0.320 6.320 19 C 0.093 3.907 20 C -0.153 4.153 21 C -0.177 4.177 22 C -0.172 4.172 23 C -0.156 4.156 24 C -0.085 4.085 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.033 0.967 32 H 0.255 0.745 33 H 0.032 0.968 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.118 0.882 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 12.509 -7.391 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.023 3.977 4 N -0.295 5.295 5 C -0.380 4.380 6 H 0.078 0.922 7 C -0.190 4.190 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.048 3.952 14 C -0.104 4.104 15 C -0.079 4.079 16 C -0.229 4.229 17 C 0.058 3.942 18 O -0.235 6.235 19 C 0.017 3.983 20 C -0.172 4.172 21 C -0.214 4.214 22 C -0.209 4.209 23 C -0.175 4.175 24 C -0.104 4.104 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.133 0.867 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.136 0.864 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.232 12.489 -7.488 14.564 hybrid contribution 0.902 0.245 0.898 1.296 sum 1.134 12.734 -6.590 14.383 Atomic orbital electron populations 1.21759 0.97827 1.00276 1.00669 1.22085 0.92980 1.00856 1.02075 1.20933 0.85167 0.93374 0.98248 1.43801 0.99335 1.84546 1.01841 1.19030 1.03063 1.25397 0.90545 0.92216 1.25009 1.00633 0.95239 0.98076 1.69974 1.23761 1.19184 1.39842 0.86576 0.81243 0.78258 0.82076 1.20712 1.21568 1.20934 1.20025 1.00689 0.88353 0.86173 1.21176 0.93103 1.00891 0.95262 1.20913 0.97322 0.92942 0.96734 1.21162 1.00470 0.97347 1.03917 1.18816 0.95439 0.83368 0.96604 1.85958 1.40655 1.25481 1.71373 1.22177 0.86321 0.91156 0.98622 1.22114 0.95300 0.95205 1.04535 1.23106 1.01394 1.03710 0.93217 1.22997 1.00448 0.99512 0.97973 1.20258 0.96657 0.95433 1.05157 1.20871 0.98736 0.93285 0.97529 0.93682 0.93907 0.93455 0.93047 0.91904 0.94091 0.94868 0.93483 0.94946 0.87570 0.86014 0.86704 0.91825 0.92188 0.86706 0.88538 0.88534 0.88285 0.88501 0.86403 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.14 -2.74 6.26 -26.73 -0.17 -2.90 16 3 C 0.15 3.12 5.67 -4.04 -0.02 3.10 16 4 N -0.58 -13.95 2.43 -174.60 -0.42 -14.38 16 5 C -0.25 -6.67 9.48 -15.06 -0.14 -6.82 16 6 H 0.06 1.62 7.93 -52.49 -0.42 1.20 16 7 C 0.01 0.27 4.94 -17.43 -0.09 0.19 16 8 N -0.88 -24.49 11.34 55.49 0.63 -23.86 16 9 Si 0.89 21.09 29.61 -169.99 -5.03 16.05 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.17 3.99 5.42 -5.19 -0.03 3.96 16 14 C -0.10 -2.10 5.46 -104.60 -0.57 -2.67 16 15 C -0.06 -1.23 9.69 -39.61 -0.38 -1.61 16 16 C -0.21 -3.78 9.04 -39.43 -0.36 -4.14 16 17 C 0.10 1.79 6.69 -39.21 -0.26 1.52 16 18 O -0.32 -5.06 10.14 -19.44 -0.20 -5.26 16 19 C 0.09 1.16 5.02 37.16 0.19 1.35 16 20 C -0.15 -1.57 6.05 -90.62 -0.55 -2.12 16 21 C -0.18 -1.53 10.18 -26.69 -0.27 -1.80 16 22 C -0.17 -1.41 10.26 -26.69 -0.27 -1.69 16 23 C -0.16 -2.70 9.99 -39.43 -0.39 -3.09 16 24 C -0.09 -1.56 9.69 -39.60 -0.38 -1.94 16 25 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 31 H 0.03 0.64 8.08 -51.92 -0.42 0.22 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.03 0.71 8.01 -51.93 -0.42 0.29 16 34 H 0.11 2.75 5.27 -51.93 -0.27 2.47 16 35 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 36 H 0.12 1.81 6.30 -52.48 -0.33 1.47 16 37 H 0.06 0.79 7.65 -51.93 -0.40 0.39 16 38 H 0.06 0.72 7.41 -51.93 -0.38 0.33 16 39 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 0.81 8.03 -51.93 -0.42 0.40 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -28.24 371.08 -10.45 -38.70 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.68 Total: 3.74 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -3.34 Total: -20.58 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.20 Total: -38.24 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.20 Total: -5.26 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.24 -10.45 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191267910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.617 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds