Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47340 * 2 1 4 4 N 1.46499 * 109.47571 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00000 * 269.49884 * 4 3 2 6 6 H 1.08000 * 120.00227 * 325.90483 * 5 4 3 7 7 C 1.38814 * 119.99703 * 145.90372 * 5 4 3 8 8 N 1.31620 * 120.00236 * 336.77149 * 7 5 4 9 9 Si 1.86806 * 119.99689 * 156.77157 * 7 5 4 10 10 H 1.48499 * 109.46987 * 59.99908 * 9 7 5 11 11 H 1.48500 * 109.47137 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47161 * 299.99921 * 9 7 5 13 13 C 1.46502 * 119.99770 * 89.49097 * 4 3 2 14 14 C 1.50707 * 109.46777 * 90.00653 * 13 4 3 15 15 C 1.38264 * 119.94661 * 89.99374 * 14 13 4 16 16 C 1.38139 * 120.05732 * 180.27341 * 15 14 13 17 17 C 1.38734 * 119.94367 * 359.45852 * 16 15 14 18 18 O 1.35903 * 120.05719 * 180.24870 * 17 16 15 19 19 C 1.42897 * 116.99948 * 0.27605 * 18 17 16 20 20 C 1.52998 * 109.47319 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.50128 * 243.74817 * 20 19 18 22 22 C 1.53000 * 117.50109 * 175.08344 * 20 19 18 23 23 C 1.38736 * 119.88831 * 0.52295 * 17 16 15 24 24 C 1.38147 * 119.94046 * 359.74937 * 23 17 16 25 25 H 1.09008 * 109.47104 * 59.99924 * 1 2 3 26 26 H 1.09002 * 109.47164 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47238 * 300.00224 * 1 2 3 28 28 H 1.09007 * 109.47397 * 240.00307 * 2 1 3 29 29 H 1.08995 * 109.47015 * 119.99821 * 2 1 3 30 30 H 1.09007 * 109.47139 * 59.99721 * 3 2 1 31 31 H 1.09008 * 109.47084 * 300.00088 * 3 2 1 32 32 H 0.97005 * 119.99654 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47517 * 330.00662 * 13 4 3 34 34 H 1.08993 * 109.47114 * 209.99966 * 13 4 3 35 35 H 1.08008 * 119.96669 * 0.02562 * 15 14 13 36 36 H 1.08004 * 120.02895 * 179.70694 * 16 15 14 37 37 H 1.09000 * 109.47258 * 300.00261 * 19 18 17 38 38 H 1.09002 * 109.47247 * 59.99770 * 19 18 17 39 39 H 1.09002 * 115.54866 * 29.41360 * 20 19 18 40 40 H 1.09005 * 117.49558 * 359.97438 * 21 20 19 41 41 H 1.08998 * 117.49889 * 145.01991 * 21 20 19 42 42 H 1.08993 * 117.50114 * 214.98254 * 22 20 19 43 43 H 1.09002 * 117.49935 * 0.02562 * 22 20 19 44 44 H 1.07992 * 120.02865 * 179.77176 * 23 17 16 45 45 H 1.08001 * 119.96807 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4531 1.1867 6 1 3.7881 1.9850 2.0368 7 6 5.3983 0.7802 1.2965 8 7 5.6758 -0.2125 0.4779 9 14 6.6318 1.2835 2.6060 10 1 6.0158 1.1359 3.9491 11 1 7.8334 0.4158 2.5139 12 1 7.0270 2.6994 2.3957 13 6 4.2380 1.4311 -1.2678 14 6 4.4894 2.8480 -1.7154 15 6 5.6418 3.5023 -1.3209 16 6 5.8718 4.8030 -1.7252 17 6 4.9508 5.4490 -2.5370 18 8 5.1772 6.7269 -2.9403 19 6 6.3876 7.3427 -2.4956 20 6 6.4671 8.7678 -3.0465 21 6 7.6067 9.0880 -4.0160 22 6 7.6389 9.6382 -2.5879 23 6 3.7954 4.7902 -2.9319 24 6 3.5674 3.4914 -2.5202 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 6.5209 -0.6825 0.5545 33 1 3.6493 0.9105 -2.0231 34 1 5.1903 0.9185 -1.1325 35 1 6.3608 2.9973 -0.6928 36 1 6.7699 5.3153 -1.4129 37 1 6.4011 7.3726 -1.4061 38 1 7.2411 6.7670 -2.8538 39 1 5.5097 9.2609 -3.2149 40 1 8.3000 8.2833 -4.2610 41 1 7.3990 9.7919 -4.8219 42 1 7.4525 10.7038 -2.4549 43 1 8.3534 9.1954 -1.8940 44 1 3.0752 5.2922 -3.5607 45 1 2.6679 2.9783 -2.8269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191267910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = 8.293747 kcal Electronic energy + Delta-G solvation = -22736.085974 eV Core-core repulsion = 19526.434230 eV Total energy + Delta-G solvation = -3209.651744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07943 -39.19223 -37.96154 -37.12218 -34.59893 -32.90792 -31.92543 -31.16185 -28.71185 -27.31573 -26.73341 -23.83031 -23.69744 -23.29236 -22.26123 -21.47024 -21.38391 -19.13641 -18.69758 -17.31711 -16.91524 -16.72083 -16.17583 -15.96554 -15.83359 -15.54987 -15.31539 -14.95729 -14.79464 -14.33422 -14.21047 -13.83643 -13.62392 -13.47536 -13.13296 -12.71034 -12.61846 -12.50524 -12.44096 -12.34913 -12.23268 -12.01793 -11.96428 -11.89427 -11.71029 -11.54960 -11.39084 -11.29991 -10.90766 -10.51303 -9.84170 -8.92732 -8.58274 -7.82033 -5.36853 0.50037 0.60659 1.43161 1.45955 1.52035 2.15140 2.50730 2.84825 2.91251 3.26031 3.73378 3.87923 3.88340 3.96803 3.97639 4.06034 4.20059 4.29280 4.33799 4.35883 4.49349 4.52850 4.57591 4.62164 4.71178 4.75184 4.81398 4.86673 4.91877 4.97892 4.98754 5.18014 5.20672 5.21244 5.22521 5.29075 5.42096 5.48125 5.55298 5.61895 5.63354 5.80141 5.94229 6.02810 6.47415 6.53999 7.17642 7.88814 8.39935 9.14646 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.004084 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.690232 B = 6853.663880 C = 8201.026595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.146 3.854 4 N -0.591 5.591 5 C -0.259 4.259 6 H 0.050 0.950 7 C -0.028 4.028 8 N -0.911 5.911 9 Si 0.941 3.059 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.181 3.819 14 C -0.121 4.121 15 C -0.079 4.079 16 C -0.210 4.210 17 C 0.107 3.893 18 O -0.324 6.324 19 C 0.086 3.914 20 C -0.171 4.171 21 C -0.174 4.174 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.081 4.081 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.029 0.971 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.251 0.749 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.134 0.866 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.145 0.855 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 14.728 -8.292 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.021 3.979 4 N -0.310 5.310 5 C -0.390 4.390 6 H 0.068 0.932 7 C -0.225 4.225 8 N -0.555 5.555 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.207 1.207 13 C 0.055 3.945 14 C -0.124 4.124 15 C -0.098 4.098 16 C -0.229 4.229 17 C 0.062 3.938 18 O -0.238 6.238 19 C 0.011 3.989 20 C -0.189 4.189 21 C -0.211 4.211 22 C -0.197 4.197 23 C -0.172 4.172 24 C -0.099 4.099 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.119 0.881 44 H 0.163 0.837 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.478 14.729 -8.395 16.960 hybrid contribution 1.117 -0.344 1.112 1.613 sum 0.640 14.384 -7.283 16.136 Atomic orbital electron populations 1.21662 0.94183 1.01656 1.01996 1.21929 0.96106 0.99272 0.99790 1.21055 0.83515 0.94334 0.99010 1.43992 1.00668 1.84867 1.01497 1.19151 1.03681 1.24880 0.91274 0.93228 1.25532 1.01837 0.95293 0.99881 1.70090 1.23801 1.20197 1.41408 0.85754 0.79337 0.77764 0.80194 1.20355 1.21664 1.20743 1.19796 0.99015 0.89814 0.85877 1.20945 0.94377 0.99822 0.97238 1.20804 0.97275 0.94164 0.97585 1.21268 1.01455 0.96370 1.03791 1.18952 0.95147 0.84061 0.95633 1.85975 1.42212 1.24412 1.71217 1.22424 0.85210 0.92377 0.98870 1.22079 0.96134 0.94125 1.06602 1.23208 1.00167 1.03899 0.93816 1.23114 0.98838 1.00021 0.97722 1.20554 0.96987 0.94950 1.04726 1.20994 0.98640 0.93752 0.96563 0.91770 0.92558 0.92664 0.94304 0.95203 0.94423 0.92776 0.93933 0.94539 0.90782 0.88421 0.84856 0.91834 0.91700 0.86891 0.88505 0.87283 0.86741 0.88086 0.83694 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.91 71.98 0.71 -3.25 16 2 C -0.13 -5.11 6.26 30.59 0.19 -4.92 16 3 C 0.15 6.08 5.67 86.38 0.49 6.57 16 4 N -0.59 -29.18 2.43 -706.32 -1.72 -30.90 16 5 C -0.26 -14.20 9.48 84.03 0.80 -13.40 16 6 H 0.05 2.76 7.93 -2.91 -0.02 2.74 16 7 C -0.03 -1.53 4.94 84.86 0.42 -1.11 16 8 N -0.91 -52.29 11.34 21.65 0.25 -52.05 16 9 Si 0.94 44.40 29.61 68.60 2.03 46.44 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.18 8.53 5.42 85.64 0.46 9.00 16 14 C -0.12 -5.05 5.46 -19.85 -0.11 -5.16 16 15 C -0.08 -3.30 9.69 22.25 0.22 -3.08 16 16 C -0.21 -7.42 9.04 22.36 0.20 -7.21 16 17 C 0.11 3.55 6.69 22.51 0.15 3.70 16 18 O -0.32 -9.55 10.14 -92.46 -0.94 -10.49 16 19 C 0.09 2.00 5.02 71.98 0.36 2.36 16 20 C -0.17 -3.15 6.05 -10.79 -0.07 -3.21 16 21 C -0.17 -2.56 10.18 30.62 0.31 -2.25 16 22 C -0.16 -2.20 10.26 30.62 0.31 -1.89 16 23 C -0.15 -4.93 9.99 22.37 0.22 -4.71 16 24 C -0.08 -2.83 9.69 22.25 0.22 -2.61 16 25 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.57 8.03 -2.38 -0.02 1.55 16 31 H 0.05 2.00 8.08 -2.38 -0.02 1.98 16 32 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 33 H 0.04 1.63 8.01 -2.39 -0.02 1.61 16 34 H 0.07 4.02 5.27 -2.39 -0.01 4.01 16 35 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.13 4.07 6.30 -2.91 -0.02 4.05 16 37 H 0.06 1.47 7.65 -2.39 -0.02 1.45 16 38 H 0.06 1.44 7.41 -2.39 -0.02 1.42 16 39 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.10 1.42 8.03 -2.38 -0.02 1.40 16 41 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -61.78 371.08 5.45 -56.33 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.94 Total: 21.85 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 4.90 Total: -31.18 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -1.47 Total: -82.95 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.94 Total: -10.49 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.44 kcal Total: -61.78 5.45 -56.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191267910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.621 kcal (2) G-P(sol) polarization free energy of solvation -61.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds