Wall clock time and date at job start Tue Mar 31 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47471 * 2 1 4 4 H 1.08995 * 109.47543 * 183.89638 * 3 2 1 5 5 C 1.50698 * 109.47216 * 303.89987 * 3 2 1 6 6 H 1.08005 * 119.99692 * 115.36077 * 5 3 2 7 7 C 1.37872 * 119.99928 * 295.35904 * 5 3 2 8 8 N 1.31512 * 119.99994 * 354.19132 * 7 5 3 9 9 Si 1.86806 * 119.99951 * 174.19241 * 7 5 3 10 10 H 1.48499 * 109.46667 * 269.99840 * 9 7 5 11 11 H 1.48497 * 109.47071 * 29.99905 * 9 7 5 12 12 H 1.48494 * 109.47021 * 150.00140 * 9 7 5 13 13 N 1.46904 * 109.46785 * 63.89975 * 3 2 1 14 14 C 1.46904 * 111.00176 * 80.80979 * 13 3 2 15 15 C 1.50696 * 109.46968 * 184.82712 * 14 13 3 16 16 C 1.38264 * 119.94024 * 269.72249 * 15 14 13 17 17 C 1.38149 * 120.05734 * 179.72933 * 16 15 14 18 18 C 1.38737 * 119.93769 * 0.56578 * 17 16 15 19 19 O 1.35901 * 120.05438 * 179.67926 * 18 17 16 20 20 C 1.42898 * 117.00018 * 0.03020 * 19 18 17 21 21 C 1.53004 * 109.47350 * 179.97438 * 20 19 18 22 22 C 1.53004 * 117.49862 * 243.74655 * 21 20 19 23 23 C 1.52999 * 117.49786 * 175.08533 * 21 20 19 24 24 C 1.38732 * 119.89089 * 359.71182 * 18 17 16 25 25 C 1.38143 * 119.94392 * 359.97438 * 24 18 17 26 26 H 1.08999 * 109.47223 * 184.86939 * 1 2 3 27 27 H 1.09001 * 109.46894 * 304.86579 * 1 2 3 28 28 H 1.09002 * 109.47241 * 64.86555 * 1 2 3 29 29 H 1.08999 * 109.47200 * 240.00030 * 2 1 3 30 30 H 1.09008 * 109.47139 * 120.00535 * 2 1 3 31 31 H 0.96997 * 120.00459 * 354.16805 * 8 7 5 32 32 H 1.00897 * 111.00397 * 316.84867 * 13 3 2 33 33 H 1.09005 * 109.46830 * 304.82036 * 14 13 3 34 34 H 1.08995 * 109.47071 * 64.82160 * 14 13 3 35 35 H 1.08000 * 119.97588 * 359.97438 * 16 15 14 36 36 H 1.08001 * 120.03393 * 180.24791 * 17 16 15 37 37 H 1.09003 * 109.47068 * 299.99559 * 20 19 18 38 38 H 1.08996 * 109.47412 * 59.99175 * 20 19 18 39 39 H 1.08996 * 115.54968 * 29.41545 * 21 20 19 40 40 H 1.08998 * 117.49625 * 359.97438 * 22 21 20 41 41 H 1.08996 * 117.49608 * 145.01663 * 22 21 20 42 42 H 1.09004 * 117.49531 * 214.97838 * 23 21 20 43 43 H 1.08990 * 117.50449 * 359.97438 * 23 21 20 44 44 H 1.08001 * 120.02560 * 180.02562 * 24 18 17 45 45 H 1.07994 * 119.97236 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1278 1.4432 -0.0698 5 6 1.4604 2.1802 -1.1793 6 1 0.7875 3.0098 -1.0195 7 6 1.7892 1.7963 -2.4620 8 7 2.6949 0.8629 -2.6572 9 14 0.9483 2.6019 -3.9226 10 1 -0.2752 1.8368 -4.2732 11 1 0.5767 3.9964 -3.5726 12 1 1.8748 2.6129 -5.0830 13 7 1.6288 2.1072 1.2438 14 6 2.5285 1.7561 2.3508 15 6 2.0091 2.3587 3.6306 16 6 2.4167 3.6234 4.0130 17 6 1.9377 4.1804 5.1830 18 6 1.0562 3.4649 5.9804 19 8 0.5887 4.0080 7.1351 20 6 1.0462 5.3206 7.4665 21 6 0.4167 5.7612 8.7896 22 6 -0.5220 6.9691 8.7577 23 6 0.8716 7.0985 9.3776 24 6 0.6533 2.1938 5.5973 25 6 1.1301 1.6439 4.4232 26 1 -0.3633 -1.0239 0.0872 27 1 -0.3633 0.5875 0.8432 28 1 -0.3634 0.4365 -0.9304 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 3.1921 0.5046 -1.9054 32 1 0.6711 1.8864 1.4723 33 1 2.5739 0.6717 2.4520 34 1 3.5261 2.1439 2.1451 35 1 3.1069 4.1779 3.3946 36 1 2.2532 5.1699 5.4793 37 1 2.1317 5.3129 7.5650 38 1 0.7579 6.0158 6.6780 39 1 0.1805 4.9586 9.4881 40 1 -0.6908 7.4500 7.7942 41 1 -1.3756 6.9611 9.4355 42 1 0.9343 7.1756 10.4631 43 1 1.6196 7.6641 8.8222 44 1 -0.0331 1.6351 6.2162 45 1 0.8165 0.6547 4.1244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191497724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:34 Heat of formation + Delta-G solvation = -14.895253 kcal Electronic energy + Delta-G solvation = -22178.018833 eV Core-core repulsion = 18967.361539 eV Total energy + Delta-G solvation = -3210.657294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20651 -39.40342 -38.36791 -37.51285 -34.75521 -32.87079 -32.04416 -30.85534 -28.74405 -27.67505 -25.61920 -25.16154 -23.88963 -23.29686 -22.18406 -21.51571 -21.31149 -19.23463 -18.82471 -17.41060 -17.05263 -16.81714 -16.20632 -15.98126 -15.75129 -15.50233 -15.28757 -15.09276 -14.85706 -14.44661 -14.18175 -14.14637 -13.92599 -13.53307 -13.30459 -13.07770 -12.62542 -12.45713 -12.42611 -12.38716 -12.18197 -11.97095 -11.92418 -11.88959 -11.73313 -11.62318 -11.40141 -10.92701 -10.60318 -10.39837 -9.97629 -9.20816 -8.94122 -8.48404 -6.19150 0.36399 0.41321 1.55850 1.63581 1.81130 2.09006 2.60395 2.74181 2.85289 3.26634 3.69064 3.69402 3.84456 3.88814 3.91399 3.98565 4.04820 4.19817 4.23910 4.34097 4.34419 4.41294 4.44358 4.52230 4.53966 4.61761 4.73312 4.75605 4.76887 4.95313 4.98434 5.07607 5.12460 5.17097 5.21218 5.22709 5.27942 5.35778 5.43739 5.53382 5.70871 5.77685 5.98849 6.22226 6.43317 6.55672 6.76208 6.80927 7.56065 8.86626 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025985 B = 0.002704 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.274696 B =10353.403290 C =10830.354039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.145 4.145 3 C 0.206 3.794 4 H -0.006 1.006 5 C -0.574 4.574 6 H 0.043 0.957 7 C -0.028 4.028 8 N -0.940 5.940 9 Si 1.109 2.891 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.288 1.288 13 N -0.676 5.676 14 C 0.103 3.897 15 C -0.122 4.122 16 C -0.069 4.069 17 C -0.207 4.207 18 C 0.119 3.881 19 O -0.325 6.325 20 C 0.085 3.915 21 C -0.172 4.172 22 C -0.180 4.180 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.078 4.078 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.257 0.743 32 H 0.334 0.666 33 H 0.031 0.969 34 H 0.060 0.940 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.143 0.857 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 8.314 23.469 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.185 4.185 3 C 0.097 3.903 4 H 0.012 0.988 5 C -0.612 4.612 6 H 0.061 0.939 7 C -0.226 4.226 8 N -0.579 5.579 9 Si 0.933 3.067 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.214 1.214 13 N -0.308 5.308 14 C -0.026 4.026 15 C -0.123 4.123 16 C -0.088 4.088 17 C -0.226 4.226 18 C 0.073 3.927 19 O -0.239 6.239 20 C 0.011 3.989 21 C -0.190 4.190 22 C -0.216 4.216 23 C -0.195 4.195 24 C -0.175 4.175 25 C -0.096 4.096 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.153 0.847 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.161 0.839 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.167 8.800 21.831 23.904 hybrid contribution 0.367 -0.956 1.428 1.758 sum -3.800 7.843 23.260 24.839 Atomic orbital electron populations 1.21455 0.95063 0.99962 1.01291 1.22073 0.97573 0.99861 0.98966 1.19121 0.93326 0.89581 0.88235 0.98803 1.22096 1.29638 1.17246 0.92254 0.93879 1.26944 0.96685 0.95920 1.03047 1.70867 1.23785 1.28292 1.34931 0.83013 0.75373 0.75531 0.72777 1.20074 1.20137 1.21413 1.60768 1.05702 1.62189 1.02129 1.20787 0.96595 0.96847 0.88340 1.19782 1.00292 0.95916 0.96303 1.20958 0.98368 0.94178 0.95248 1.21374 1.02193 1.01924 0.97101 1.19089 0.94091 0.93328 0.86170 1.86011 1.67562 1.33112 1.37195 1.22487 0.99010 0.81373 0.96056 1.22100 1.06016 0.93255 0.97622 1.23211 0.94551 1.00443 1.03445 1.23113 0.97838 0.96734 1.01777 1.20544 1.04270 0.94168 0.98538 1.20991 0.95388 1.00011 0.93231 0.92936 0.92920 0.93853 0.94187 0.94178 0.93220 0.84675 0.95108 0.92110 0.85607 0.83688 0.90763 0.91457 0.87048 0.88472 0.87694 0.86953 0.87694 0.83885 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.38 71.98 0.68 -4.20 16 2 C -0.14 -6.60 5.46 30.59 0.17 -6.43 16 3 C 0.21 10.28 1.95 44.17 0.09 10.37 16 4 H -0.01 -0.33 7.31 -2.39 -0.02 -0.35 16 5 C -0.57 -31.84 7.42 25.60 0.19 -31.65 16 6 H 0.04 2.45 7.82 -2.91 -0.02 2.43 16 7 C -0.03 -1.59 5.27 84.65 0.45 -1.14 16 8 N -0.94 -56.52 12.88 21.45 0.28 -56.24 16 9 Si 1.11 50.73 29.91 68.60 2.05 52.78 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 13 N -0.68 -28.76 6.24 -499.47 -3.12 -31.88 16 14 C 0.10 3.70 5.63 85.56 0.48 4.18 16 15 C -0.12 -3.76 5.34 -19.85 -0.11 -3.87 16 16 C -0.07 -1.97 9.69 22.25 0.22 -1.75 16 17 C -0.21 -5.13 9.04 22.37 0.20 -4.92 16 18 C 0.12 3.00 6.69 22.51 0.15 3.15 16 19 O -0.32 -7.52 10.14 -92.43 -0.94 -8.45 16 20 C 0.09 1.44 5.02 71.98 0.36 1.80 16 21 C -0.17 -2.41 6.05 -10.79 -0.07 -2.47 16 22 C -0.18 -2.10 10.18 30.62 0.31 -1.79 16 23 C -0.16 -1.55 10.25 30.62 0.31 -1.24 16 24 C -0.16 -3.95 9.99 22.37 0.22 -3.73 16 25 C -0.08 -2.11 9.69 22.25 0.22 -1.89 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.94 6.24 -2.39 -0.01 1.92 16 28 H 0.04 1.95 7.30 -2.39 -0.02 1.94 16 29 H 0.04 2.05 6.27 -2.39 -0.01 2.03 16 30 H 0.04 1.64 7.04 -2.38 -0.02 1.62 16 31 H 0.26 15.63 6.04 -92.71 -0.56 15.07 16 32 H 0.33 13.55 6.43 -89.70 -0.58 12.97 16 33 H 0.03 1.08 6.94 -2.38 -0.02 1.06 16 34 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 35 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 36 H 0.15 2.83 6.30 -2.91 -0.02 2.81 16 37 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 38 H 0.07 1.08 7.39 -2.39 -0.02 1.06 16 39 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.14 8.03 -2.39 -0.02 1.12 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 45 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -64.00 361.30 2.75 -61.25 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.60 Total: 28.13 kcal Atomic # 6 Polarization: -49.46 SS G_CDS: 3.87 Total: -45.59 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -2.84 Total: -88.12 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.94 Total: -8.45 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.78 kcal Total: -64.00 2.75 -61.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191497724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.359 kcal (2) G-P(sol) polarization free energy of solvation -64.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds