Wall clock time and date at job start Tue Mar 31 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47048 * 2 1 4 4 H 1.09005 * 109.47171 * 175.62367 * 3 2 1 5 5 C 1.50700 * 109.47659 * 55.62145 * 3 2 1 6 6 H 1.07991 * 120.00212 * 239.72781 * 5 3 2 7 7 C 1.37878 * 119.99681 * 59.99917 * 5 3 2 8 8 N 1.31511 * 120.00084 * 359.72665 * 7 5 3 9 9 Si 1.86800 * 119.99939 * 179.72826 * 7 5 3 10 10 H 1.48505 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47126 * 120.00055 * 9 7 5 12 12 H 1.48498 * 109.47129 * 240.00300 * 9 7 5 13 13 N 1.46903 * 109.46823 * 295.61801 * 3 2 1 14 14 C 1.46893 * 111.00510 * 273.93270 * 13 3 2 15 15 C 1.50694 * 109.47396 * 176.24085 * 14 13 3 16 16 C 1.38266 * 119.94692 * 269.72845 * 15 14 13 17 17 C 1.38148 * 120.05411 * 179.72097 * 16 15 14 18 18 C 1.38734 * 119.94561 * 0.57488 * 17 16 15 19 19 O 1.35892 * 120.05834 * 179.67584 * 18 17 16 20 20 C 1.42905 * 116.99996 * 0.02828 * 19 18 17 21 21 C 1.53002 * 109.47076 * 179.97438 * 20 19 18 22 22 C 1.53002 * 117.49544 * 243.73878 * 21 20 19 23 23 C 1.53001 * 117.49446 * 175.08330 * 21 20 19 24 24 C 1.38735 * 119.88542 * 359.70456 * 18 17 16 25 25 C 1.38139 * 119.94432 * 359.97438 * 24 18 17 26 26 H 1.09006 * 109.47139 * 185.26921 * 1 2 3 27 27 H 1.09000 * 109.47247 * 305.26678 * 1 2 3 28 28 H 1.08997 * 109.47084 * 65.26596 * 1 2 3 29 29 H 1.08995 * 109.47071 * 239.99887 * 2 1 3 30 30 H 1.09004 * 109.47250 * 119.99570 * 2 1 3 31 31 H 0.97002 * 120.00241 * 180.02562 * 8 7 5 32 32 H 1.00902 * 110.99524 * 37.89089 * 13 3 2 33 33 H 1.09000 * 109.47332 * 296.24829 * 14 13 3 34 34 H 1.09001 * 109.46824 * 56.23954 * 14 13 3 35 35 H 1.07993 * 119.96870 * 359.97438 * 16 15 14 36 36 H 1.08000 * 120.02573 * 180.25308 * 17 16 15 37 37 H 1.09007 * 109.46709 * 299.99356 * 20 19 18 38 38 H 1.08993 * 109.47236 * 59.99163 * 20 19 18 39 39 H 1.08998 * 115.55077 * 29.41539 * 21 20 19 40 40 H 1.09001 * 117.49544 * 0.02562 * 22 21 20 41 41 H 1.09001 * 117.49691 * 145.02174 * 22 21 20 42 42 H 1.09004 * 117.49865 * 214.97845 * 23 21 20 43 43 H 1.08998 * 117.50191 * 359.97438 * 23 21 20 44 44 H 1.07999 * 120.02400 * 180.02562 * 24 18 17 45 45 H 1.08007 * 119.97045 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1272 1.4435 0.0784 5 6 1.4511 2.1836 1.1726 6 1 0.8434 3.0609 1.0070 7 6 1.6928 1.7449 2.4572 8 7 2.4327 0.6766 2.6589 9 14 0.9691 2.6680 3.9110 10 1 0.1803 3.8260 3.4191 11 1 0.0843 1.7593 4.6836 12 1 2.0669 3.1520 4.7861 13 7 1.6385 2.1037 -1.2489 14 6 2.6154 1.8504 -2.3163 15 6 2.1253 2.4650 -3.6020 16 6 1.3420 1.7233 -4.4669 17 6 0.8867 2.2863 -5.6434 18 6 1.2259 3.5932 -5.9625 19 8 0.7847 4.1471 -7.1223 20 6 -0.0253 3.3264 -7.9663 21 6 -0.4239 4.1157 -9.2149 22 6 -1.9121 4.4034 -9.4236 23 6 -1.2009 3.3717 -10.3028 24 6 2.0168 4.3333 -5.0957 25 6 2.4640 3.7679 -3.9173 26 1 -0.3634 -1.0234 0.0944 27 1 -0.3634 0.5933 0.8390 28 1 -0.3633 0.4300 -0.9334 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.6025 0.3677 3.5626 32 1 0.7133 1.8152 -1.5295 33 1 3.5737 2.2928 -2.0443 34 1 2.7365 0.7755 -2.4504 35 1 1.0825 0.7044 -4.2205 36 1 0.2714 1.7079 -6.3167 37 1 0.5377 2.4405 -8.2604 38 1 -0.9225 3.0239 -7.4263 39 1 0.2860 4.8782 -9.5355 40 1 -2.6070 4.0307 -8.6711 41 1 -2.1812 5.3551 -9.8819 42 1 -1.0026 3.6450 -11.3392 43 1 -1.4278 2.3198 -10.1292 44 1 2.2819 5.3510 -5.3416 45 1 3.0795 4.3439 -3.2420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191497734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:37 Heat of formation + Delta-G solvation = 3.318886 kcal Electronic energy + Delta-G solvation = -22150.155578 eV Core-core repulsion = 18940.288109 eV Total energy + Delta-G solvation = -3209.867470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16368 -38.28989 -37.07903 -36.08949 -32.81999 -31.14585 -30.90378 -29.36751 -27.78510 -26.25505 -24.03389 -23.14412 -22.82894 -22.78782 -21.00932 -20.67068 -19.26522 -18.21964 -16.66320 -16.23889 -15.93623 -15.30685 -15.13376 -14.73729 -14.64499 -14.20035 -14.06516 -13.49060 -13.29643 -13.04031 -12.90521 -12.62913 -12.37927 -12.05436 -11.95352 -11.66247 -11.63055 -11.32776 -11.05260 -10.92001 -10.88302 -10.66998 -10.58339 -10.49983 -10.29399 -9.94554 -9.76952 -9.55651 -8.95917 -8.83689 -8.32750 -7.97049 -7.15583 -5.95423 -3.96825 1.50802 1.58341 2.93776 3.33004 3.41221 3.43140 3.46650 3.91850 4.34350 4.45228 4.47321 4.59468 4.82279 4.87775 4.99941 5.09005 5.19275 5.21345 5.22144 5.36139 5.46717 5.49462 5.56406 5.65919 5.68122 5.73257 5.86154 5.99980 6.21065 6.30250 6.35085 6.37782 6.42475 6.51299 6.58319 6.89543 6.92777 6.94714 7.29194 7.30479 7.45559 7.52762 7.72409 7.92108 8.30977 8.58234 8.64789 9.09633 9.66917 11.11465 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028205 B = 0.002633 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.506319 B =10632.647508 C =10673.345646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.214 3.786 4 H 0.033 0.967 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.098 3.902 15 C -0.102 4.102 16 C -0.078 4.078 17 C -0.210 4.210 18 C 0.118 3.882 19 O -0.316 6.316 20 C 0.092 3.908 21 C -0.156 4.156 22 C -0.176 4.176 23 C -0.171 4.171 24 C -0.152 4.152 25 C -0.059 4.059 26 H 0.023 0.977 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.010 0.990 30 H 0.094 0.906 31 H 0.258 0.742 32 H 0.327 0.673 33 H 0.072 0.928 34 H 0.026 0.974 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.127 0.873 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.480 3.056 -22.278 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.185 4.185 3 C 0.106 3.894 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.310 5.310 14 C -0.031 4.031 15 C -0.102 4.102 16 C -0.097 4.097 17 C -0.228 4.228 18 C 0.073 3.927 19 O -0.230 6.230 20 C 0.017 3.983 21 C -0.174 4.174 22 C -0.213 4.213 23 C -0.208 4.208 24 C -0.171 4.171 25 C -0.078 4.078 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.029 0.971 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.145 0.855 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.097 3.751 -22.017 22.707 hybrid contribution -0.684 -0.833 0.620 1.243 sum -4.781 2.918 -21.397 22.118 Atomic orbital electron populations 1.21600 0.97743 0.98676 1.00746 1.22106 0.94953 1.01200 1.00286 1.19243 0.95891 0.88543 0.85715 0.94954 1.21110 1.30509 1.11269 0.89556 0.91963 1.24920 0.95575 0.95202 0.98771 1.69887 1.39082 1.23768 1.20935 0.86521 0.78860 0.79890 0.82629 1.19750 1.21276 1.21215 1.60931 1.03765 1.63093 1.03163 1.20854 0.97125 0.96747 0.88383 1.20000 0.99086 0.94589 0.96573 1.20865 0.96125 0.99600 0.93068 1.21113 1.06428 0.95070 1.00217 1.18924 0.95518 0.92096 0.86189 1.86009 1.65670 1.41586 1.29732 1.22241 0.94072 0.92832 0.89199 1.22112 0.95648 1.03362 0.96304 1.23120 0.94405 1.00701 1.03098 1.23002 1.03607 0.98109 0.96115 1.20400 1.01534 1.00448 0.94726 1.20910 0.97859 0.94360 0.94676 0.95777 0.91235 0.95439 0.97128 0.88804 0.93212 0.85489 0.90989 0.95567 0.86154 0.86085 0.91731 0.91935 0.86606 0.88446 0.88404 0.88200 0.88493 0.85546 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.40 37.16 0.35 -2.43 16 2 C -0.15 -3.40 5.52 -26.73 -0.15 -3.55 16 3 C 0.21 5.25 2.33 -68.86 -0.16 5.09 16 4 H 0.03 0.88 7.83 -51.93 -0.41 0.47 16 5 C -0.49 -13.13 7.28 -34.44 -0.25 -13.38 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.52 5.30 -17.82 -0.09 1.42 16 8 N -0.90 -25.26 11.36 55.43 0.63 -24.63 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.68 -14.37 6.25 -109.22 -0.68 -15.06 16 14 C 0.10 1.77 5.60 -4.98 -0.03 1.74 16 15 C -0.10 -1.61 5.35 -104.60 -0.56 -2.17 16 16 C -0.08 -1.12 9.69 -39.60 -0.38 -1.50 16 17 C -0.21 -2.74 9.04 -39.43 -0.36 -3.10 16 18 C 0.12 1.61 6.69 -39.21 -0.26 1.34 16 19 O -0.32 -3.98 10.14 -19.40 -0.20 -4.18 16 20 C 0.09 0.87 5.02 37.16 0.19 1.05 16 21 C -0.16 -1.24 6.06 -90.62 -0.55 -1.79 16 22 C -0.18 -1.21 10.18 -26.69 -0.27 -1.48 16 23 C -0.17 -1.05 10.25 -26.69 -0.27 -1.32 16 24 C -0.15 -2.11 9.99 -39.43 -0.39 -2.51 16 25 C -0.06 -0.88 9.69 -39.61 -0.38 -1.27 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.63 6.89 -51.93 -0.36 1.27 16 28 H 0.03 0.52 6.61 -51.93 -0.34 0.18 16 29 H 0.01 0.22 7.39 -51.93 -0.38 -0.16 16 30 H 0.09 2.46 6.19 -51.93 -0.32 2.14 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.33 6.74 6.54 -39.29 -0.26 6.48 16 33 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 34 H 0.03 0.47 7.32 -51.93 -0.38 0.09 16 35 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.12 1.30 6.30 -52.49 -0.33 0.97 16 37 H 0.06 0.55 7.66 -51.92 -0.40 0.16 16 38 H 0.06 0.56 7.39 -51.93 -0.38 0.18 16 39 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 0.65 8.03 -51.93 -0.42 0.24 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -28.66 363.24 -10.70 -39.37 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.33 Total: 6.49 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -3.58 Total: -23.83 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.05 Total: -39.69 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.20 Total: -4.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.66 -10.70 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191497734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.684 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds