Wall clock time and date at job start Tue Mar 31 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47048 * 2 1 4 4 H 1.09005 * 109.47171 * 175.62367 * 3 2 1 5 5 C 1.50700 * 109.47659 * 55.62145 * 3 2 1 6 6 H 1.07991 * 120.00212 * 239.72781 * 5 3 2 7 7 C 1.37878 * 119.99681 * 59.99917 * 5 3 2 8 8 N 1.31511 * 120.00084 * 359.72665 * 7 5 3 9 9 Si 1.86800 * 119.99939 * 179.72826 * 7 5 3 10 10 H 1.48505 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47126 * 120.00055 * 9 7 5 12 12 H 1.48498 * 109.47129 * 240.00300 * 9 7 5 13 13 N 1.46903 * 109.46823 * 295.61801 * 3 2 1 14 14 C 1.46893 * 111.00510 * 273.93270 * 13 3 2 15 15 C 1.50694 * 109.47396 * 176.24085 * 14 13 3 16 16 C 1.38266 * 119.94692 * 269.72845 * 15 14 13 17 17 C 1.38148 * 120.05411 * 179.72097 * 16 15 14 18 18 C 1.38734 * 119.94561 * 0.57488 * 17 16 15 19 19 O 1.35892 * 120.05834 * 179.67584 * 18 17 16 20 20 C 1.42905 * 116.99996 * 0.02828 * 19 18 17 21 21 C 1.53002 * 109.47076 * 179.97438 * 20 19 18 22 22 C 1.53002 * 117.49544 * 243.73878 * 21 20 19 23 23 C 1.53001 * 117.49446 * 175.08330 * 21 20 19 24 24 C 1.38735 * 119.88542 * 359.70456 * 18 17 16 25 25 C 1.38139 * 119.94432 * 359.97438 * 24 18 17 26 26 H 1.09006 * 109.47139 * 185.26921 * 1 2 3 27 27 H 1.09000 * 109.47247 * 305.26678 * 1 2 3 28 28 H 1.08997 * 109.47084 * 65.26596 * 1 2 3 29 29 H 1.08995 * 109.47071 * 239.99887 * 2 1 3 30 30 H 1.09004 * 109.47250 * 119.99570 * 2 1 3 31 31 H 0.97002 * 120.00241 * 180.02562 * 8 7 5 32 32 H 1.00902 * 110.99524 * 37.89089 * 13 3 2 33 33 H 1.09000 * 109.47332 * 296.24829 * 14 13 3 34 34 H 1.09001 * 109.46824 * 56.23954 * 14 13 3 35 35 H 1.07993 * 119.96870 * 359.97438 * 16 15 14 36 36 H 1.08000 * 120.02573 * 180.25308 * 17 16 15 37 37 H 1.09007 * 109.46709 * 299.99356 * 20 19 18 38 38 H 1.08993 * 109.47236 * 59.99163 * 20 19 18 39 39 H 1.08998 * 115.55077 * 29.41539 * 21 20 19 40 40 H 1.09001 * 117.49544 * 0.02562 * 22 21 20 41 41 H 1.09001 * 117.49691 * 145.02174 * 22 21 20 42 42 H 1.09004 * 117.49865 * 214.97845 * 23 21 20 43 43 H 1.08998 * 117.50191 * 359.97438 * 23 21 20 44 44 H 1.07999 * 120.02400 * 180.02562 * 24 18 17 45 45 H 1.08007 * 119.97045 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1272 1.4435 0.0784 5 6 1.4511 2.1836 1.1726 6 1 0.8434 3.0609 1.0070 7 6 1.6928 1.7449 2.4572 8 7 2.4327 0.6766 2.6589 9 14 0.9691 2.6680 3.9110 10 1 0.1803 3.8260 3.4191 11 1 0.0843 1.7593 4.6836 12 1 2.0669 3.1520 4.7861 13 7 1.6385 2.1037 -1.2489 14 6 2.6154 1.8504 -2.3163 15 6 2.1253 2.4650 -3.6020 16 6 1.3420 1.7233 -4.4669 17 6 0.8867 2.2863 -5.6434 18 6 1.2259 3.5932 -5.9625 19 8 0.7847 4.1471 -7.1223 20 6 -0.0253 3.3264 -7.9663 21 6 -0.4239 4.1157 -9.2149 22 6 -1.9121 4.4034 -9.4236 23 6 -1.2009 3.3717 -10.3028 24 6 2.0168 4.3333 -5.0957 25 6 2.4640 3.7679 -3.9173 26 1 -0.3634 -1.0234 0.0944 27 1 -0.3634 0.5933 0.8390 28 1 -0.3633 0.4300 -0.9334 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.6025 0.3677 3.5626 32 1 0.7133 1.8152 -1.5295 33 1 3.5737 2.2928 -2.0443 34 1 2.7365 0.7755 -2.4504 35 1 1.0825 0.7044 -4.2205 36 1 0.2714 1.7079 -6.3167 37 1 0.5377 2.4405 -8.2604 38 1 -0.9225 3.0239 -7.4263 39 1 0.2860 4.8782 -9.5355 40 1 -2.6070 4.0307 -8.6711 41 1 -2.1812 5.3551 -9.8819 42 1 -1.0026 3.6450 -11.3392 43 1 -1.4278 2.3198 -10.1292 44 1 2.2819 5.3510 -5.3416 45 1 3.0795 4.3439 -3.2420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191497734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:36 Heat of formation + Delta-G solvation = -11.159914 kcal Electronic energy + Delta-G solvation = -22150.783426 eV Core-core repulsion = 18940.288109 eV Total energy + Delta-G solvation = -3210.495318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.15973 -39.29626 -38.16974 -37.42021 -34.58998 -32.86489 -31.99620 -30.74916 -28.78147 -27.97766 -25.61655 -24.90042 -23.82286 -23.28052 -22.10366 -21.44269 -21.15746 -19.18119 -18.24036 -17.42530 -16.87407 -16.79948 -16.48104 -16.20245 -15.67063 -15.43613 -15.05380 -15.02732 -14.68386 -14.38275 -14.22484 -13.91359 -13.82905 -13.48705 -13.28186 -12.88174 -12.76508 -12.45064 -12.42009 -12.36877 -12.28080 -12.10592 -11.84328 -11.69128 -11.59208 -11.41125 -11.37557 -10.95323 -10.89948 -10.42204 -9.92025 -9.12275 -8.83648 -8.03880 -6.12309 0.42764 0.45691 1.42195 1.45168 1.56415 2.12589 2.46740 2.79643 2.87335 3.24453 3.71560 3.82781 3.88372 3.92147 3.94657 4.04628 4.11581 4.23073 4.28682 4.46068 4.48008 4.55498 4.56251 4.60759 4.68824 4.74395 4.77429 4.79203 4.87901 4.99895 5.11800 5.13231 5.19135 5.22662 5.32259 5.37470 5.39000 5.44921 5.71402 5.75598 5.78059 5.83482 5.87612 6.34298 6.47900 6.70539 6.86917 7.00827 7.55479 9.01219 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028205 B = 0.002633 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.506319 B =10632.647508 C =10673.345646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C 0.219 3.781 4 H -0.002 1.002 5 C -0.497 4.497 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.682 5.682 14 C 0.105 3.895 15 C -0.120 4.120 16 C -0.080 4.080 17 C -0.206 4.206 18 C 0.117 3.883 19 O -0.326 6.326 20 C 0.086 3.914 21 C -0.173 4.173 22 C -0.180 4.180 23 C -0.157 4.157 24 C -0.159 4.159 25 C -0.067 4.067 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.026 0.974 30 H 0.063 0.937 31 H 0.259 0.741 32 H 0.332 0.668 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.140 0.860 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.956 3.028 -24.050 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.536 4.536 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.313 5.313 14 C -0.024 4.024 15 C -0.121 4.121 16 C -0.098 4.098 17 C -0.225 4.225 18 C 0.072 3.928 19 O -0.240 6.240 20 C 0.011 3.989 21 C -0.191 4.191 22 C -0.217 4.217 23 C -0.194 4.194 24 C -0.178 4.178 25 C -0.086 4.086 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.149 0.851 36 H 0.165 0.835 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.157 0.843 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.580 3.727 -23.811 24.739 hybrid contribution -0.224 -0.794 1.039 1.327 sum -5.804 2.933 -22.772 23.683 Atomic orbital electron populations 1.21481 0.95959 0.99638 1.00787 1.21949 0.96472 0.99959 0.99495 1.18993 0.93608 0.89493 0.86807 0.98398 1.21301 1.30381 1.11081 0.90807 0.93130 1.25590 0.95942 0.95930 1.01084 1.70011 1.39946 1.24809 1.21362 0.85607 0.78146 0.78806 0.79665 1.19502 1.20714 1.21055 1.60791 1.04641 1.62823 1.03066 1.20760 0.96028 0.96977 0.88631 1.19820 1.00905 0.95279 0.96070 1.21000 0.95614 1.00020 0.93178 1.21347 1.06097 0.95005 1.00004 1.19073 0.94972 0.92303 0.86460 1.86013 1.65980 1.42560 1.29496 1.22486 0.93978 0.93160 0.89263 1.22104 0.96252 1.04114 0.96605 1.23209 0.93572 1.01457 1.03437 1.23111 1.01716 0.98396 0.96181 1.20556 1.01588 1.01194 0.94463 1.20962 0.98144 0.94207 0.95270 0.93835 0.93656 0.93332 0.95517 0.91887 0.93223 0.84962 0.91969 0.95419 0.85059 0.83499 0.90711 0.91337 0.87185 0.88390 0.87799 0.87025 0.87597 0.84265 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.40 71.98 0.68 -4.35 16 2 C -0.14 -6.49 5.52 30.59 0.17 -6.32 16 3 C 0.22 10.99 2.33 44.17 0.10 11.09 16 4 H 0.00 -0.11 7.83 -2.38 -0.02 -0.13 16 5 C -0.50 -27.27 7.28 25.60 0.19 -27.08 16 6 H 0.05 2.84 7.81 -2.92 -0.02 2.82 16 7 C 0.01 0.69 5.30 84.66 0.45 1.14 16 8 N -0.92 -52.72 11.36 21.45 0.24 -52.48 16 9 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 N -0.68 -28.98 6.25 -499.48 -3.12 -32.10 16 14 C 0.10 3.80 5.60 85.56 0.48 4.28 16 15 C -0.12 -3.72 5.35 -19.85 -0.11 -3.83 16 16 C -0.08 -2.14 9.69 22.25 0.22 -1.92 16 17 C -0.21 -4.91 9.04 22.37 0.20 -4.70 16 18 C 0.12 3.00 6.69 22.51 0.15 3.15 16 19 O -0.33 -7.65 10.14 -92.33 -0.94 -8.59 16 20 C 0.09 1.43 5.02 71.98 0.36 1.79 16 21 C -0.17 -2.42 6.06 -10.79 -0.07 -2.49 16 22 C -0.18 -2.09 10.18 30.62 0.31 -1.78 16 23 C -0.16 -1.52 10.25 30.62 0.31 -1.20 16 24 C -0.16 -4.26 9.99 22.37 0.22 -4.03 16 25 C -0.07 -1.97 9.69 22.25 0.22 -1.75 16 26 H 0.04 1.60 8.14 -2.38 -0.02 1.59 16 27 H 0.04 2.09 6.89 -2.39 -0.02 2.07 16 28 H 0.05 1.78 6.61 -2.39 -0.02 1.76 16 29 H 0.03 1.13 7.39 -2.39 -0.02 1.11 16 30 H 0.06 3.35 6.19 -2.38 -0.01 3.34 16 31 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.33 13.41 6.54 -89.69 -0.59 12.83 16 33 H 0.06 2.33 8.07 -2.39 -0.02 2.31 16 34 H 0.03 0.99 7.32 -2.39 -0.02 0.97 16 35 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.15 2.66 6.30 -2.91 -0.02 2.65 16 37 H 0.07 1.09 7.66 -2.38 -0.02 1.07 16 38 H 0.07 1.06 7.39 -2.39 -0.02 1.04 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.10 1.12 8.03 -2.39 -0.02 1.10 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 45 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -61.24 363.24 2.48 -58.76 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.38 Total: 26.25 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 3.89 Total: -38.02 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -2.88 Total: -84.58 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.94 Total: -8.59 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -61.24 2.48 -58.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191497734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.597 kcal (2) G-P(sol) polarization free energy of solvation -61.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds