Wall clock time and date at job start Tue Mar 31 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47345 * 2 1 4 4 H 1.08999 * 109.47043 * 54.72278 * 3 2 1 5 5 C 1.50691 * 109.47299 * 174.72699 * 3 2 1 6 6 H 1.08008 * 120.00532 * 120.15353 * 5 3 2 7 7 C 1.37884 * 120.00215 * 300.15540 * 5 3 2 8 8 N 1.31510 * 120.00283 * 166.68589 * 7 5 3 9 9 Si 1.86797 * 119.99479 * 346.69480 * 7 5 3 10 10 H 1.48508 * 109.47109 * 264.64913 * 9 7 5 11 11 H 1.48498 * 109.47553 * 24.65025 * 9 7 5 12 12 H 1.48499 * 109.47332 * 144.65206 * 9 7 5 13 13 N 1.46905 * 109.46982 * 294.72505 * 3 2 1 14 14 C 1.46906 * 110.99791 * 101.42146 * 13 3 2 15 15 C 1.53005 * 109.47002 * 183.10980 * 14 13 3 16 16 C 1.52993 * 109.46980 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.47058 * 180.02562 * 16 15 14 18 18 C 1.38280 * 120.11270 * 269.72554 * 17 16 15 19 19 C 1.37934 * 120.34852 * 179.97438 * 18 17 16 20 20 C 1.39283 * 120.24057 * 0.55136 * 19 18 17 21 21 C 1.38882 * 118.87086 * 359.40755 * 20 19 18 22 22 C 1.37735 * 120.78906 * 0.42453 * 21 20 19 23 23 C 1.51653 * 107.03441 * 180.68377 * 21 20 19 24 24 C 1.54710 * 101.92085 * 15.47925 * 23 21 20 25 25 O 1.36133 * 129.88757 * 179.10027 * 20 19 18 26 26 H 1.09002 * 109.46949 * 66.77756 * 1 2 3 27 27 H 1.08997 * 109.47034 * 186.77785 * 1 2 3 28 28 H 1.09001 * 109.46533 * 306.77485 * 1 2 3 29 29 H 1.09003 * 109.46656 * 240.00510 * 2 1 3 30 30 H 1.08992 * 109.47075 * 120.00313 * 2 1 3 31 31 H 0.96996 * 119.99746 * 179.97438 * 8 7 5 32 32 H 1.00892 * 111.00029 * 337.46799 * 13 3 2 33 33 H 1.09002 * 109.47038 * 303.11017 * 14 13 3 34 34 H 1.09000 * 109.47111 * 63.11142 * 14 13 3 35 35 H 1.08996 * 109.47473 * 300.00318 * 15 14 13 36 36 H 1.09001 * 109.46718 * 59.99703 * 15 14 13 37 37 H 1.09002 * 109.47260 * 300.00159 * 16 15 14 38 38 H 1.09001 * 109.47428 * 60.00395 * 16 15 14 39 39 H 1.08001 * 119.83002 * 0.17001 * 18 17 16 40 40 H 1.08002 * 119.88157 * 180.27739 * 19 18 17 41 41 H 1.08007 * 120.00687 * 179.76177 * 22 21 20 42 42 H 1.09004 * 110.93995 * 133.62862 * 23 21 20 43 43 H 1.08995 * 110.93857 * 257.28150 * 23 21 20 44 44 H 1.08994 * 110.75169 * 93.01557 * 24 23 21 45 45 H 1.09000 * 110.74636 * 216.18903 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6017 1.9828 0.8389 5 6 3.5413 1.4444 0.1306 6 1 4.1501 1.8900 -0.6424 7 6 4.1379 0.8774 1.2368 8 7 5.4316 0.6411 1.2376 9 14 3.1084 0.4447 2.7342 10 1 3.1738 1.5555 3.7177 11 1 1.6981 0.2320 2.3207 12 1 3.6349 -0.7974 3.3548 13 7 1.6572 2.0972 -1.2581 14 6 0.4897 2.9677 -1.0644 15 6 0.0742 3.5701 -2.4081 16 6 -1.1420 4.4761 -2.2064 17 6 -1.5517 5.0689 -3.5301 18 6 -1.0190 6.2758 -3.9444 19 6 -1.3901 6.8226 -5.1551 20 6 -2.3144 6.1685 -5.9662 21 6 -2.8416 4.9565 -5.5397 22 6 -2.4669 4.4107 -4.3319 23 6 -3.7926 4.4806 -6.6209 24 6 -3.3904 5.3758 -7.8169 25 8 -2.8272 6.5318 -7.1739 26 1 -0.3633 0.4052 -0.9444 27 1 -0.3633 -1.0205 0.1213 28 1 -0.3632 0.6153 0.8232 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 5.8513 0.2426 2.0160 32 1 1.4842 1.4162 -1.9821 33 1 -0.3355 2.3835 -0.6573 34 1 0.7449 3.7687 -0.3705 35 1 0.8994 4.1542 -2.8152 36 1 -0.1809 2.7690 -3.1019 37 1 -1.9671 3.8916 -1.7995 38 1 -0.8873 5.2772 -1.5125 39 1 -0.3061 6.7916 -3.3181 40 1 -0.9659 7.7634 -5.4733 41 1 -2.8878 3.4693 -4.0108 42 1 -3.6270 3.4277 -6.8495 43 1 -4.8290 4.6565 -6.3331 44 1 -2.6458 4.8784 -8.4384 45 1 -4.2654 5.6470 -8.4076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193314562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:39 Heat of formation + Delta-G solvation = -16.220638 kcal Electronic energy + Delta-G solvation = -22227.073365 eV Core-core repulsion = 19016.358598 eV Total energy + Delta-G solvation = -3210.714767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27393 -38.23544 -36.97407 -34.26638 -32.91023 -32.17372 -31.22626 -29.51470 -29.08379 -27.19587 -24.71458 -23.54502 -22.50569 -22.11909 -21.28868 -20.72275 -19.76241 -17.59466 -16.92715 -16.66759 -16.40167 -15.68991 -15.02937 -14.83556 -14.35155 -14.27919 -13.88609 -13.47345 -13.41861 -13.33746 -13.10093 -12.93011 -12.73931 -12.34044 -12.05372 -11.97195 -11.82379 -11.59662 -11.50076 -11.18432 -10.97667 -10.86307 -10.79351 -10.65153 -10.41950 -10.27361 -9.86668 -9.26218 -9.19978 -9.04777 -8.37537 -8.15910 -7.27585 -6.01872 -3.94312 1.12462 1.20806 3.02356 3.28882 3.38047 3.40963 3.52018 4.12853 4.28556 4.45955 4.62982 4.67749 4.74640 4.96245 5.04552 5.08157 5.21963 5.24866 5.27070 5.36324 5.40967 5.48280 5.61125 5.68456 5.73120 5.80457 5.84320 5.93475 5.97680 6.01602 6.10638 6.15769 6.20772 6.38715 6.43502 6.46621 6.55575 6.57708 6.63939 6.78630 6.90168 7.00358 7.21548 7.80776 8.00749 8.40365 8.77592 9.15273 9.64422 11.11839 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032275 B = 0.002634 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.336927 B =10629.010757 C =10929.774785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.156 4.156 3 C 0.193 3.807 4 H 0.022 0.978 5 C -0.498 4.498 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.898 5.898 9 Si 0.856 3.144 10 H -0.284 1.284 11 H -0.247 1.247 12 H -0.289 1.289 13 N -0.673 5.673 14 C 0.055 3.945 15 C -0.111 4.111 16 C -0.076 4.076 17 C -0.098 4.098 18 C -0.081 4.081 19 C -0.134 4.134 20 C 0.093 3.907 21 C -0.175 4.175 22 C -0.068 4.068 23 C -0.110 4.110 24 C 0.052 3.948 25 O -0.308 6.308 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.347 8.072 -13.898 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C 0.084 3.916 4 H 0.040 0.960 5 C -0.536 4.536 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.536 5.536 9 Si 0.684 3.316 10 H -0.210 1.210 11 H -0.172 1.172 12 H -0.215 1.215 13 N -0.303 5.303 14 C -0.074 4.074 15 C -0.149 4.149 16 C -0.114 4.114 17 C -0.098 4.098 18 C -0.099 4.099 19 C -0.153 4.153 20 C 0.048 3.952 21 C -0.175 4.175 22 C -0.086 4.086 23 C -0.147 4.147 24 C -0.023 4.023 25 O -0.223 6.223 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.740 8.722 -13.832 25.634 hybrid contribution -1.189 -1.168 0.982 1.935 sum -20.929 7.553 -12.851 25.695 Atomic orbital electron populations 1.21933 0.98501 1.00124 1.00436 1.22741 0.92861 1.01756 1.02122 1.19548 0.96617 0.88072 0.87330 0.96049 1.21044 0.89222 1.36822 1.06544 0.90211 1.24934 0.94730 0.95145 0.98452 1.69959 1.10341 1.43647 1.29682 0.87432 0.82343 0.77938 0.83905 1.21027 1.17156 1.21475 1.60613 1.34518 1.25375 1.09761 1.22087 0.92294 0.96990 0.96079 1.21577 0.96672 0.98585 0.98025 1.20549 0.98514 0.99339 0.92956 1.19840 0.97619 0.95108 0.97279 1.20840 0.98891 0.95174 0.95006 1.20255 0.98196 1.01862 0.94997 1.19542 0.94567 0.94272 0.86783 1.20720 1.01299 0.97813 0.97703 1.20193 0.96846 0.99356 0.92241 1.21784 0.99238 1.01080 0.92623 1.23803 0.98684 0.84807 0.95051 1.86807 1.72721 1.33459 1.29266 0.93599 0.94077 0.93615 0.92408 0.91779 0.92872 0.85705 0.96038 0.91669 0.90987 0.92484 0.91259 0.90728 0.84894 0.85524 0.85876 0.89088 0.89313 0.90567 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.63 37.16 0.32 -2.29 16 2 C -0.16 -3.28 4.37 -26.73 -0.12 -3.40 16 3 C 0.19 4.47 1.75 -68.87 -0.12 4.35 16 4 H 0.02 0.52 6.67 -51.93 -0.35 0.17 16 5 C -0.50 -14.08 9.35 -34.44 -0.32 -14.40 16 6 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 7 C 0.07 1.98 5.35 -17.82 -0.10 1.88 16 8 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 9 Si 0.86 20.99 25.68 -169.99 -4.37 16.62 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.25 -5.60 5.15 56.52 0.29 -5.30 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 N -0.67 -13.49 6.10 -107.95 -0.66 -14.15 16 14 C 0.06 0.90 5.08 -3.82 -0.02 0.88 16 15 C -0.11 -1.46 5.43 -26.73 -0.15 -1.61 16 16 C -0.08 -0.83 5.35 -27.88 -0.15 -0.98 16 17 C -0.10 -1.09 5.14 -104.56 -0.54 -1.63 16 18 C -0.08 -0.88 9.68 -39.68 -0.38 -1.26 16 19 C -0.13 -1.48 10.06 -39.30 -0.40 -1.88 16 20 C 0.09 1.08 7.04 -38.95 -0.27 0.81 16 21 C -0.17 -1.85 6.27 -104.10 -0.65 -2.50 16 22 C -0.07 -0.73 9.69 -39.73 -0.39 -1.11 16 23 C -0.11 -0.82 7.12 -26.51 -0.19 -1.01 16 24 C 0.05 0.37 8.01 38.06 0.30 0.68 16 25 O -0.31 -3.42 11.10 -20.16 -0.22 -3.64 16 26 H 0.04 0.71 6.72 -51.93 -0.35 0.36 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.06 1.21 8.03 -51.93 -0.42 0.79 16 30 H 0.06 1.45 4.10 -51.93 -0.21 1.23 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.33 6.11 7.95 -39.30 -0.31 5.80 16 33 H 0.02 0.34 6.02 -51.93 -0.31 0.02 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 353.93 15.07 5.33 5.33 Total: -1.00 -31.74 353.93 -9.83 -41.57 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.53 Total: 4.61 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -3.16 Total: -23.49 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.12 Total: -41.01 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.22 Total: -3.64 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.37 Total: 16.62 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.74 -9.83 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193314562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.346 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds