Wall clock time and date at job start Tue Mar 31 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47345 * 2 1 4 4 H 1.08999 * 109.47043 * 54.72278 * 3 2 1 5 5 C 1.50691 * 109.47299 * 174.72699 * 3 2 1 6 6 H 1.08008 * 120.00532 * 120.15353 * 5 3 2 7 7 C 1.37884 * 120.00215 * 300.15540 * 5 3 2 8 8 N 1.31510 * 120.00283 * 166.68589 * 7 5 3 9 9 Si 1.86797 * 119.99479 * 346.69480 * 7 5 3 10 10 H 1.48508 * 109.47109 * 264.64913 * 9 7 5 11 11 H 1.48498 * 109.47553 * 24.65025 * 9 7 5 12 12 H 1.48499 * 109.47332 * 144.65206 * 9 7 5 13 13 N 1.46905 * 109.46982 * 294.72505 * 3 2 1 14 14 C 1.46906 * 110.99791 * 101.42146 * 13 3 2 15 15 C 1.53005 * 109.47002 * 183.10980 * 14 13 3 16 16 C 1.52993 * 109.46980 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.47058 * 180.02562 * 16 15 14 18 18 C 1.38280 * 120.11270 * 269.72554 * 17 16 15 19 19 C 1.37934 * 120.34852 * 179.97438 * 18 17 16 20 20 C 1.39283 * 120.24057 * 0.55136 * 19 18 17 21 21 C 1.38882 * 118.87086 * 359.40755 * 20 19 18 22 22 C 1.37735 * 120.78906 * 0.42453 * 21 20 19 23 23 C 1.51653 * 107.03441 * 180.68377 * 21 20 19 24 24 C 1.54710 * 101.92085 * 15.47925 * 23 21 20 25 25 O 1.36133 * 129.88757 * 179.10027 * 20 19 18 26 26 H 1.09002 * 109.46949 * 66.77756 * 1 2 3 27 27 H 1.08997 * 109.47034 * 186.77785 * 1 2 3 28 28 H 1.09001 * 109.46533 * 306.77485 * 1 2 3 29 29 H 1.09003 * 109.46656 * 240.00510 * 2 1 3 30 30 H 1.08992 * 109.47075 * 120.00313 * 2 1 3 31 31 H 0.96996 * 119.99746 * 179.97438 * 8 7 5 32 32 H 1.00892 * 111.00029 * 337.46799 * 13 3 2 33 33 H 1.09002 * 109.47038 * 303.11017 * 14 13 3 34 34 H 1.09000 * 109.47111 * 63.11142 * 14 13 3 35 35 H 1.08996 * 109.47473 * 300.00318 * 15 14 13 36 36 H 1.09001 * 109.46718 * 59.99703 * 15 14 13 37 37 H 1.09002 * 109.47260 * 300.00159 * 16 15 14 38 38 H 1.09001 * 109.47428 * 60.00395 * 16 15 14 39 39 H 1.08001 * 119.83002 * 0.17001 * 18 17 16 40 40 H 1.08002 * 119.88157 * 180.27739 * 19 18 17 41 41 H 1.08007 * 120.00687 * 179.76177 * 22 21 20 42 42 H 1.09004 * 110.93995 * 133.62862 * 23 21 20 43 43 H 1.08995 * 110.93857 * 257.28150 * 23 21 20 44 44 H 1.08994 * 110.75169 * 93.01557 * 24 23 21 45 45 H 1.09000 * 110.74636 * 216.18903 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6017 1.9828 0.8389 5 6 3.5413 1.4444 0.1306 6 1 4.1501 1.8900 -0.6424 7 6 4.1379 0.8774 1.2368 8 7 5.4316 0.6411 1.2376 9 14 3.1084 0.4447 2.7342 10 1 3.1738 1.5555 3.7177 11 1 1.6981 0.2320 2.3207 12 1 3.6349 -0.7974 3.3548 13 7 1.6572 2.0972 -1.2581 14 6 0.4897 2.9677 -1.0644 15 6 0.0742 3.5701 -2.4081 16 6 -1.1420 4.4761 -2.2064 17 6 -1.5517 5.0689 -3.5301 18 6 -1.0190 6.2758 -3.9444 19 6 -1.3901 6.8226 -5.1551 20 6 -2.3144 6.1685 -5.9662 21 6 -2.8416 4.9565 -5.5397 22 6 -2.4669 4.4107 -4.3319 23 6 -3.7926 4.4806 -6.6209 24 6 -3.3904 5.3758 -7.8169 25 8 -2.8272 6.5318 -7.1739 26 1 -0.3633 0.4052 -0.9444 27 1 -0.3633 -1.0205 0.1213 28 1 -0.3632 0.6153 0.8232 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 5.8513 0.2426 2.0160 32 1 1.4842 1.4162 -1.9821 33 1 -0.3355 2.3835 -0.6573 34 1 0.7449 3.7687 -0.3705 35 1 0.8994 4.1542 -2.8152 36 1 -0.1809 2.7690 -3.1019 37 1 -1.9671 3.8916 -1.7995 38 1 -0.8873 5.2772 -1.5125 39 1 -0.3061 6.7916 -3.3181 40 1 -0.9659 7.7634 -5.4733 41 1 -2.8878 3.4693 -4.0108 42 1 -3.6270 3.4277 -6.8495 43 1 -4.8290 4.6565 -6.3331 44 1 -2.6458 4.8784 -8.4384 45 1 -4.2654 5.6470 -8.4076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193314562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:38 Heat of formation + Delta-G solvation = -35.974117 kcal Electronic energy + Delta-G solvation = -22227.929940 eV Core-core repulsion = 19016.358598 eV Total energy + Delta-G solvation = -3211.571342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.99706 -39.14665 -38.44903 -35.52241 -34.14754 -33.59161 -32.54525 -30.44592 -30.08276 -28.81034 -25.93660 -24.36171 -24.02262 -22.88127 -22.48373 -21.87498 -21.24723 -18.73724 -18.31923 -17.66051 -17.08919 -17.00316 -16.66516 -15.99446 -15.74164 -15.29719 -15.03192 -14.88101 -14.36571 -14.26537 -14.22881 -14.09711 -13.81052 -13.48564 -13.42489 -13.22183 -12.81155 -12.72747 -12.62437 -12.50475 -12.42558 -12.38129 -11.90601 -11.77354 -11.63760 -11.49175 -11.45019 -11.22224 -11.01752 -10.52364 -9.82574 -8.96217 -8.87019 -8.24537 -6.22259 0.33398 0.39518 1.34685 1.39421 1.47775 2.34641 2.38312 2.72536 3.08652 3.47686 3.57812 3.69807 3.92612 4.00616 4.15081 4.16836 4.28652 4.34346 4.36832 4.44630 4.49140 4.51273 4.59417 4.63682 4.69204 4.72171 4.85310 4.87354 4.89508 4.90703 4.99682 5.12105 5.14689 5.19094 5.23554 5.32544 5.35013 5.42484 5.47863 5.54768 5.69392 5.73062 5.76850 6.12472 6.24676 6.78476 6.84060 6.88962 7.41762 8.93287 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032275 B = 0.002634 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.336927 B =10629.010757 C =10929.774785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.154 4.154 3 C 0.199 3.801 4 H 0.021 0.979 5 C -0.507 4.507 6 H 0.027 0.973 7 C 0.008 3.992 8 N -0.951 5.951 9 Si 0.926 3.074 10 H -0.284 1.284 11 H -0.212 1.212 12 H -0.288 1.288 13 N -0.691 5.691 14 C 0.058 3.942 15 C -0.099 4.099 16 C -0.067 4.067 17 C -0.108 4.108 18 C -0.090 4.090 19 C -0.149 4.149 20 C 0.074 3.926 21 C -0.184 4.184 22 C -0.075 4.075 23 C -0.107 4.107 24 C 0.045 3.955 25 O -0.329 6.329 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.263 0.737 32 H 0.334 0.666 33 H 0.039 0.961 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.894 7.335 -13.860 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.193 4.193 3 C 0.089 3.911 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.046 0.954 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.750 3.250 10 H -0.210 1.210 11 H -0.135 1.135 12 H -0.215 1.215 13 N -0.321 5.321 14 C -0.071 4.071 15 C -0.137 4.137 16 C -0.104 4.104 17 C -0.108 4.108 18 C -0.108 4.108 19 C -0.168 4.168 20 C 0.029 3.971 21 C -0.184 4.184 22 C -0.093 4.093 23 C -0.144 4.144 24 C -0.030 4.030 25 O -0.244 6.244 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.151 0.849 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.160 0.840 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.101 0.899 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.322 7.994 -13.824 28.265 hybrid contribution -0.014 -0.869 0.814 1.191 sum -23.336 7.125 -13.010 27.651 Atomic orbital electron populations 1.21843 0.94759 1.01877 1.01665 1.22590 0.96135 0.99418 1.01206 1.19321 0.93047 0.89981 0.88712 0.96093 1.21383 0.92107 1.35829 1.05197 0.95418 1.25847 0.95907 0.95223 1.01875 1.70125 1.12727 1.45513 1.30818 0.86313 0.82320 0.77356 0.78990 1.21026 1.13478 1.21471 1.60414 1.37243 1.25767 1.08699 1.22121 0.91228 0.96126 0.97646 1.21440 0.97159 0.98813 0.96278 1.20453 0.97739 0.99105 0.93134 1.19914 0.98101 0.95324 0.97460 1.21019 0.99165 0.95490 0.95152 1.20470 0.98578 1.02422 0.95301 1.19822 0.95024 0.94959 0.87293 1.21114 1.01580 0.97502 0.98245 1.20426 0.96704 0.99931 0.92231 1.21876 0.99121 1.01929 0.91439 1.24110 0.99762 0.83928 0.95151 1.86775 1.72947 1.35377 1.29261 0.91845 0.91914 0.93133 0.92953 0.93242 0.92841 0.84874 0.94254 0.92773 0.92607 0.91848 0.89801 0.90398 0.84026 0.84817 0.84244 0.87448 0.88079 0.89883 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 8.63 71.98 0.62 -3.69 16 2 C -0.15 -6.16 4.37 30.59 0.13 -6.03 16 3 C 0.20 9.04 1.75 44.16 0.08 9.12 16 4 H 0.02 0.97 6.67 -2.39 -0.02 0.95 16 5 C -0.51 -29.48 9.35 25.60 0.24 -29.24 16 6 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 7 C 0.01 0.46 5.35 84.66 0.45 0.92 16 8 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 9 Si 0.93 43.32 25.68 68.60 1.76 45.08 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.21 -8.68 5.15 99.48 0.51 -8.17 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 13 N -0.69 -27.15 6.10 -495.43 -3.02 -30.17 16 14 C 0.06 1.76 5.08 86.30 0.44 2.20 16 15 C -0.10 -2.44 5.43 30.59 0.17 -2.27 16 16 C -0.07 -1.31 5.35 29.85 0.16 -1.15 16 17 C -0.11 -2.22 5.14 -19.83 -0.10 -2.32 16 18 C -0.09 -1.89 9.68 22.21 0.21 -1.68 16 19 C -0.15 -3.26 10.06 22.45 0.23 -3.04 16 20 C 0.07 1.66 7.04 22.68 0.16 1.82 16 21 C -0.18 -3.59 6.27 -19.52 -0.12 -3.71 16 22 C -0.07 -1.45 9.69 22.17 0.21 -1.23 16 23 C -0.11 -1.33 7.12 30.74 0.22 -1.12 16 24 C 0.04 0.56 8.01 72.57 0.58 1.14 16 25 O -0.33 -7.00 11.10 -95.07 -1.06 -8.05 16 26 H 0.06 1.67 6.72 -2.39 -0.02 1.66 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.48 8.08 -2.39 -0.02 1.46 16 29 H 0.05 2.11 8.03 -2.39 -0.02 2.09 16 30 H 0.05 2.10 4.10 -2.39 -0.01 2.09 16 31 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.33 12.11 7.95 -89.70 -0.71 11.40 16 33 H 0.04 1.08 6.02 -2.39 -0.01 1.07 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 38 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 39 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.29 353.93 1.72 -69.57 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.06 Total: 24.20 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 3.68 Total: -40.27 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -2.72 Total: -90.53 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -1.06 Total: -8.05 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.76 Total: 45.08 kcal Total: -71.29 1.72 -69.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193314562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.593 kcal (2) G-P(sol) polarization free energy of solvation -71.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds