Wall clock time and date at job start Tue Mar 31 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 H 1.09004 * 109.46759 * 304.33158 * 3 2 1 5 5 C 1.50700 * 109.47243 * 184.33586 * 3 2 1 6 6 H 1.08000 * 120.00052 * 240.00028 * 5 3 2 7 7 C 1.37881 * 119.99965 * 59.99562 * 5 3 2 8 8 N 1.31517 * 119.99720 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99980 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46988 * 119.99938 * 9 7 5 12 12 H 1.48498 * 109.46891 * 240.00175 * 9 7 5 13 13 N 1.46898 * 109.47435 * 64.33102 * 3 2 1 14 14 C 1.46904 * 111.00185 * 205.79959 * 13 3 2 15 15 C 1.53000 * 109.46930 * 174.90019 * 14 13 3 16 16 C 1.53001 * 109.46824 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47056 * 179.97438 * 16 15 14 18 18 C 1.38281 * 120.11882 * 269.72681 * 17 16 15 19 19 C 1.37933 * 120.35317 * 179.97438 * 18 17 16 20 20 C 1.39288 * 120.24017 * 0.54392 * 19 18 17 21 21 C 1.38885 * 118.87177 * 359.41431 * 20 19 18 22 22 C 1.37746 * 120.78873 * 0.42369 * 21 20 19 23 23 C 1.51646 * 107.03625 * 180.67971 * 21 20 19 24 24 C 1.54703 * 101.91798 * 15.47605 * 23 21 20 25 25 O 1.36126 * 129.88607 * 179.09802 * 20 19 18 26 26 H 1.09002 * 109.47216 * 294.08687 * 1 2 3 27 27 H 1.08997 * 109.47639 * 54.08562 * 1 2 3 28 28 H 1.09002 * 109.47392 * 174.09034 * 1 2 3 29 29 H 1.09002 * 109.47129 * 239.99692 * 2 1 3 30 30 H 1.09003 * 109.46991 * 119.99498 * 2 1 3 31 31 H 0.97001 * 119.99619 * 179.97438 * 8 7 5 32 32 H 1.00898 * 110.99827 * 81.84375 * 13 3 2 33 33 H 1.09004 * 109.46656 * 294.90072 * 14 13 3 34 34 H 1.08998 * 109.46683 * 54.89879 * 14 13 3 35 35 H 1.09000 * 109.47300 * 299.99993 * 15 14 13 36 36 H 1.09004 * 109.47156 * 60.00310 * 15 14 13 37 37 H 1.09000 * 109.47305 * 300.00147 * 16 15 14 38 38 H 1.09004 * 109.46873 * 60.00294 * 16 15 14 39 39 H 1.08002 * 119.82419 * 0.17316 * 18 17 16 40 40 H 1.07999 * 119.87952 * 180.28148 * 19 18 17 41 41 H 1.07994 * 120.00794 * 179.76775 * 22 21 20 42 42 H 1.08998 * 110.93703 * 133.63460 * 23 21 20 43 43 H 1.08997 * 110.94131 * 257.28574 * 23 21 20 44 44 H 1.09004 * 110.75225 * 93.01856 * 24 23 21 45 45 H 1.09009 * 110.74782 * 216.18607 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6146 1.9782 -0.8487 5 6 3.5432 1.4439 -0.1074 6 1 4.1399 1.8915 0.6736 7 6 4.1566 0.8736 -1.2027 8 7 3.4298 0.3290 -2.1539 9 14 6.0198 0.8747 -1.3355 10 1 6.6007 1.5435 -0.1436 11 1 6.5118 -0.5246 -1.4062 12 1 6.4282 1.6056 -2.5620 13 7 1.6376 2.1042 1.2483 14 6 1.5424 3.5588 1.0661 15 6 1.0003 4.1986 2.3458 16 6 0.9017 5.7136 2.1563 17 6 0.3671 6.3438 3.4165 18 6 -0.9949 6.5150 3.5830 19 6 -1.4894 7.0907 4.7347 20 6 -0.6194 7.5153 5.7361 21 6 0.7464 7.3371 5.5579 22 6 1.2379 6.7588 4.4083 23 6 1.4303 7.8719 6.8012 24 6 0.2502 7.9730 7.7965 25 8 -0.8870 8.1153 6.9284 26 1 -0.3634 0.4194 0.9382 27 1 -0.3634 0.6028 -0.8323 28 1 -0.3634 -1.0222 -0.1058 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8613 -0.0719 -2.9246 32 1 2.2708 1.8746 1.9996 33 1 2.5309 3.9631 0.8482 34 1 0.8694 3.7777 0.2371 35 1 0.0118 3.7942 2.5637 36 1 1.6733 3.9796 3.1748 37 1 1.8903 6.1177 1.9386 38 1 0.2289 5.9330 1.3272 39 1 -1.6753 6.1932 2.8084 40 1 -2.5549 7.2166 4.8587 41 1 2.3025 6.6297 4.2813 42 1 2.1852 7.1731 7.1616 43 1 1.8677 8.8525 6.6139 44 1 0.1693 7.0644 8.3932 45 1 0.3607 8.8466 8.4390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193314574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:41 Heat of formation + Delta-G solvation = -31.064482 kcal Electronic energy + Delta-G solvation = -22112.220749 eV Core-core repulsion = 18900.862304 eV Total energy + Delta-G solvation = -3211.358445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22420 -38.13963 -36.38815 -34.14787 -32.86291 -32.08409 -31.04148 -29.45604 -28.91552 -26.44875 -24.57723 -23.50296 -22.58491 -22.06132 -21.09470 -20.52486 -19.34314 -17.54622 -16.87643 -16.68084 -16.36684 -15.41428 -14.83786 -14.50968 -14.22795 -14.10099 -13.70125 -13.39942 -13.32278 -13.19524 -12.96422 -12.80999 -12.43352 -12.06176 -11.98467 -11.81959 -11.49711 -11.26423 -11.14905 -10.99626 -10.91102 -10.71791 -10.67327 -10.57661 -10.33964 -10.04234 -9.57337 -9.42479 -9.02984 -8.99134 -8.37875 -8.10029 -7.21227 -5.99180 -4.12184 1.17898 1.26741 3.06785 3.25347 3.33918 3.36901 3.57762 4.18210 4.33756 4.39308 4.67521 4.73782 4.83451 5.04284 5.09613 5.21889 5.27193 5.31394 5.39083 5.42478 5.47162 5.53940 5.77942 5.84246 5.92212 6.04402 6.19244 6.22120 6.27597 6.35304 6.41583 6.49431 6.52667 6.55240 6.70684 6.74186 6.79842 7.05462 7.16417 7.19761 7.46866 7.61754 7.78802 8.11224 8.17473 8.36134 8.69602 9.01646 9.55431 11.00805 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.002740 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.334991 B =10218.011521 C =10958.308188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.691 5.691 14 C 0.067 3.933 15 C -0.108 4.108 16 C -0.077 4.077 17 C -0.096 4.096 18 C -0.083 4.083 19 C -0.135 4.135 20 C 0.091 3.909 21 C -0.174 4.174 22 C -0.068 4.068 23 C -0.110 4.110 24 C 0.052 3.948 25 O -0.309 6.309 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.024 0.976 29 H 0.089 0.911 30 H 0.030 0.970 31 H 0.260 0.740 32 H 0.326 0.674 33 H 0.025 0.975 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.507 14.257 15.339 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.320 5.320 14 C -0.064 4.064 15 C -0.146 4.146 16 C -0.115 4.115 17 C -0.096 4.096 18 C -0.101 4.101 19 C -0.154 4.154 20 C 0.047 3.953 21 C -0.175 4.175 22 C -0.086 4.086 23 C -0.147 4.147 24 C -0.023 4.023 25 O -0.223 6.223 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.367 14.168 15.130 21.998 hybrid contribution 2.254 0.179 -0.138 2.265 sum -5.113 14.347 14.992 21.372 Atomic orbital electron populations 1.21681 0.99000 0.98224 1.00351 1.21498 0.92093 0.99300 1.01604 1.19153 0.92660 0.91167 0.86396 0.95103 1.21916 0.92799 1.37841 1.05745 0.92876 1.24945 0.97951 0.95031 0.95686 1.69893 1.34757 1.38190 1.09520 0.86606 0.86127 0.77743 0.77908 1.19950 1.20954 1.21044 1.60879 1.55185 1.06196 1.09710 1.21766 0.98682 0.90089 0.95818 1.21567 1.01865 0.92454 0.98693 1.20569 1.01328 0.95882 0.93702 1.19883 0.93178 0.99817 0.96721 1.20825 0.95131 0.97603 0.96494 1.20237 0.99054 1.02751 0.93330 1.19531 0.93314 0.94909 0.87568 1.20722 0.93820 1.05176 0.97772 1.20227 0.99910 0.96913 0.91565 1.21780 0.98377 1.02342 0.92241 1.23798 0.82914 1.03040 0.92575 1.86799 1.40624 1.72054 1.22828 0.93510 0.94477 0.95715 0.89240 0.95149 0.92953 0.85836 0.95627 0.92277 0.91571 0.92583 0.91100 0.90867 0.84986 0.85609 0.85785 0.89078 0.89307 0.90617 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.72 37.16 0.36 -2.45 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.71 16 3 C 0.21 5.30 1.98 -68.87 -0.14 5.16 16 4 H 0.03 0.85 7.71 -51.93 -0.40 0.45 16 5 C -0.54 -14.64 8.47 -34.44 -0.29 -14.94 16 6 H 0.05 1.43 7.73 -52.49 -0.41 1.02 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.89 -25.04 11.30 55.43 0.63 -24.41 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.69 -14.42 5.75 -107.95 -0.62 -15.04 16 14 C 0.07 1.21 5.51 -3.82 -0.02 1.19 16 15 C -0.11 -1.56 5.50 -26.73 -0.15 -1.70 16 16 C -0.08 -0.94 5.35 -27.88 -0.15 -1.09 16 17 C -0.10 -1.14 5.14 -104.56 -0.54 -1.68 16 18 C -0.08 -0.93 9.68 -39.68 -0.38 -1.32 16 19 C -0.14 -1.54 10.06 -39.30 -0.40 -1.94 16 20 C 0.09 1.10 7.04 -38.95 -0.27 0.83 16 21 C -0.17 -1.96 6.27 -104.10 -0.65 -2.61 16 22 C -0.07 -0.79 9.70 -39.72 -0.39 -1.17 16 23 C -0.11 -0.89 7.12 -26.52 -0.19 -1.08 16 24 C 0.05 0.40 8.01 38.05 0.30 0.70 16 25 O -0.31 -3.54 11.10 -20.14 -0.22 -3.76 16 26 H 0.05 0.93 7.90 -51.93 -0.41 0.52 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 2.40 5.97 -51.93 -0.31 2.09 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.33 6.76 8.45 -39.29 -0.33 6.42 16 33 H 0.03 0.50 8.11 -51.93 -0.42 0.08 16 34 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -29.29 365.03 -10.62 -39.90 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.74 Total: 4.86 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -3.14 Total: -23.10 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.01 Total: -39.46 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.22 Total: -3.76 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.29 -10.62 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193314574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.837 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds