Wall clock time and date at job start Tue Mar 31 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 H 1.09004 * 109.46759 * 304.33158 * 3 2 1 5 5 C 1.50700 * 109.47243 * 184.33586 * 3 2 1 6 6 H 1.08000 * 120.00052 * 240.00028 * 5 3 2 7 7 C 1.37881 * 119.99965 * 59.99562 * 5 3 2 8 8 N 1.31517 * 119.99720 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99980 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46988 * 119.99938 * 9 7 5 12 12 H 1.48498 * 109.46891 * 240.00175 * 9 7 5 13 13 N 1.46898 * 109.47435 * 64.33102 * 3 2 1 14 14 C 1.46904 * 111.00185 * 205.79959 * 13 3 2 15 15 C 1.53000 * 109.46930 * 174.90019 * 14 13 3 16 16 C 1.53001 * 109.46824 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47056 * 179.97438 * 16 15 14 18 18 C 1.38281 * 120.11882 * 269.72681 * 17 16 15 19 19 C 1.37933 * 120.35317 * 179.97438 * 18 17 16 20 20 C 1.39288 * 120.24017 * 0.54392 * 19 18 17 21 21 C 1.38885 * 118.87177 * 359.41431 * 20 19 18 22 22 C 1.37746 * 120.78873 * 0.42369 * 21 20 19 23 23 C 1.51646 * 107.03625 * 180.67971 * 21 20 19 24 24 C 1.54703 * 101.91798 * 15.47605 * 23 21 20 25 25 O 1.36126 * 129.88607 * 179.09802 * 20 19 18 26 26 H 1.09002 * 109.47216 * 294.08687 * 1 2 3 27 27 H 1.08997 * 109.47639 * 54.08562 * 1 2 3 28 28 H 1.09002 * 109.47392 * 174.09034 * 1 2 3 29 29 H 1.09002 * 109.47129 * 239.99692 * 2 1 3 30 30 H 1.09003 * 109.46991 * 119.99498 * 2 1 3 31 31 H 0.97001 * 119.99619 * 179.97438 * 8 7 5 32 32 H 1.00898 * 110.99827 * 81.84375 * 13 3 2 33 33 H 1.09004 * 109.46656 * 294.90072 * 14 13 3 34 34 H 1.08998 * 109.46683 * 54.89879 * 14 13 3 35 35 H 1.09000 * 109.47300 * 299.99993 * 15 14 13 36 36 H 1.09004 * 109.47156 * 60.00310 * 15 14 13 37 37 H 1.09000 * 109.47305 * 300.00147 * 16 15 14 38 38 H 1.09004 * 109.46873 * 60.00294 * 16 15 14 39 39 H 1.08002 * 119.82419 * 0.17316 * 18 17 16 40 40 H 1.07999 * 119.87952 * 180.28148 * 19 18 17 41 41 H 1.07994 * 120.00794 * 179.76775 * 22 21 20 42 42 H 1.08998 * 110.93703 * 133.63460 * 23 21 20 43 43 H 1.08997 * 110.94131 * 257.28574 * 23 21 20 44 44 H 1.09004 * 110.75225 * 93.01856 * 24 23 21 45 45 H 1.09009 * 110.74782 * 216.18607 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6146 1.9782 -0.8487 5 6 3.5432 1.4439 -0.1074 6 1 4.1399 1.8915 0.6736 7 6 4.1566 0.8736 -1.2027 8 7 3.4298 0.3290 -2.1539 9 14 6.0198 0.8747 -1.3355 10 1 6.6007 1.5435 -0.1436 11 1 6.5118 -0.5246 -1.4062 12 1 6.4282 1.6056 -2.5620 13 7 1.6376 2.1042 1.2483 14 6 1.5424 3.5588 1.0661 15 6 1.0003 4.1986 2.3458 16 6 0.9017 5.7136 2.1563 17 6 0.3671 6.3438 3.4165 18 6 -0.9949 6.5150 3.5830 19 6 -1.4894 7.0907 4.7347 20 6 -0.6194 7.5153 5.7361 21 6 0.7464 7.3371 5.5579 22 6 1.2379 6.7588 4.4083 23 6 1.4303 7.8719 6.8012 24 6 0.2502 7.9730 7.7965 25 8 -0.8870 8.1153 6.9284 26 1 -0.3634 0.4194 0.9382 27 1 -0.3634 0.6028 -0.8323 28 1 -0.3634 -1.0222 -0.1058 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8613 -0.0719 -2.9246 32 1 2.2708 1.8746 1.9996 33 1 2.5309 3.9631 0.8482 34 1 0.8694 3.7777 0.2371 35 1 0.0118 3.7942 2.5637 36 1 1.6733 3.9796 3.1748 37 1 1.8903 6.1177 1.9386 38 1 0.2289 5.9330 1.3272 39 1 -1.6753 6.1932 2.8084 40 1 -2.5549 7.2166 4.8587 41 1 2.3025 6.6297 4.2813 42 1 2.1852 7.1731 7.1616 43 1 1.8677 8.8525 6.6139 44 1 0.1693 7.0644 8.3932 45 1 0.3607 8.8466 8.4390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193314574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:41 Heat of formation + Delta-G solvation = -46.370582 kcal Electronic energy + Delta-G solvation = -22112.884471 eV Core-core repulsion = 18900.862304 eV Total energy + Delta-G solvation = -3212.022167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.99646 -39.05345 -38.07575 -35.57108 -33.89295 -33.58001 -32.62437 -30.36327 -30.02140 -28.18851 -25.95739 -24.49216 -24.10237 -22.87376 -22.37877 -21.66034 -21.12034 -18.72933 -18.31625 -17.65218 -17.07319 -16.79598 -16.54329 -15.78088 -15.57318 -15.22784 -15.03261 -14.75026 -14.41733 -14.21134 -14.10196 -13.86057 -13.67366 -13.32490 -13.23586 -13.12408 -12.96057 -12.71180 -12.60688 -12.52749 -12.44384 -12.09277 -12.01858 -11.75552 -11.57232 -11.52307 -11.44349 -11.19748 -10.95578 -10.46699 -9.82602 -9.02446 -8.95831 -8.05087 -6.27773 0.33599 0.39443 1.37182 1.39850 1.49841 2.34682 2.40121 2.72660 3.14180 3.48221 3.63309 3.73524 3.95070 4.01491 4.15662 4.17737 4.32263 4.45471 4.50063 4.60765 4.62378 4.63935 4.69644 4.76396 4.77566 4.87213 4.89618 4.92677 4.96532 5.05068 5.14390 5.19683 5.32702 5.34694 5.41976 5.43157 5.45895 5.53326 5.65021 5.68606 5.73659 5.78755 6.11773 6.21582 6.24702 6.41163 6.84617 7.03621 7.43939 8.91405 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.002740 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.334991 B =10218.011521 C =10958.308188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.220 3.780 4 H -0.002 1.002 5 C -0.559 4.559 6 H 0.050 0.950 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.684 5.684 14 C 0.069 3.931 15 C -0.091 4.091 16 C -0.069 4.069 17 C -0.106 4.106 18 C -0.087 4.087 19 C -0.146 4.146 20 C 0.075 3.925 21 C -0.184 4.184 22 C -0.078 4.078 23 C -0.108 4.108 24 C 0.046 3.954 25 O -0.327 6.327 26 H 0.057 0.943 27 H 0.030 0.970 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.262 0.738 32 H 0.328 0.672 33 H 0.011 0.989 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 14.988 16.819 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.598 4.598 6 H 0.068 0.932 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.207 1.207 13 N -0.312 5.312 14 C -0.061 4.061 15 C -0.129 4.129 16 C -0.107 4.107 17 C -0.107 4.107 18 C -0.105 4.105 19 C -0.164 4.164 20 C 0.030 3.970 21 C -0.185 4.185 22 C -0.096 4.096 23 C -0.145 4.145 24 C -0.028 4.028 25 O -0.242 6.242 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.164 0.836 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.072 14.909 16.629 23.427 hybrid contribution 2.137 -0.015 -0.559 2.209 sum -4.935 14.894 16.070 22.459 Atomic orbital electron populations 1.21541 0.96363 0.99496 1.00643 1.21369 0.94444 0.98429 0.99969 1.18941 0.91533 0.91520 0.86860 0.98373 1.22210 0.94074 1.37739 1.05768 0.93215 1.25691 1.02244 0.94782 0.95458 1.70020 1.36413 1.38724 1.09934 0.85614 0.80958 0.77773 0.77914 1.19405 1.20550 1.20742 1.60826 1.54636 1.07721 1.08028 1.21808 0.97948 0.88571 0.97755 1.21387 1.01431 0.93753 0.96358 1.20456 1.01731 0.94109 0.94359 1.19878 0.93615 1.00552 0.96632 1.21012 0.95199 0.97440 0.96863 1.20479 0.99864 1.02734 0.93363 1.19815 0.93927 0.95151 0.88066 1.21089 0.94127 1.04696 0.98577 1.20406 1.00403 0.97072 0.91755 1.21880 0.98692 1.03099 0.90852 1.24100 0.81559 1.04840 0.92296 1.86772 1.42370 1.72041 1.22986 0.92415 0.95079 0.93751 0.92163 0.95362 0.92888 0.85561 0.97106 0.92974 0.91549 0.92463 0.90918 0.90256 0.83638 0.84410 0.84947 0.87616 0.88215 0.89749 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.72 71.98 0.70 -4.32 16 2 C -0.10 -5.02 5.45 30.59 0.17 -4.86 16 3 C 0.22 11.06 1.98 44.17 0.09 11.15 16 4 H 0.00 -0.10 7.71 -2.39 -0.02 -0.11 16 5 C -0.56 -30.38 8.47 25.60 0.22 -30.16 16 6 H 0.05 2.67 7.73 -2.91 -0.02 2.65 16 7 C 0.02 1.00 5.29 84.66 0.45 1.44 16 8 N -0.91 -52.32 11.30 21.45 0.24 -52.08 16 9 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 N -0.68 -28.46 5.75 -495.44 -2.85 -31.31 16 14 C 0.07 2.51 5.51 86.30 0.48 2.98 16 15 C -0.09 -2.55 5.50 30.59 0.17 -2.38 16 16 C -0.07 -1.61 5.35 29.85 0.16 -1.45 16 17 C -0.11 -2.42 5.14 -19.83 -0.10 -2.53 16 18 C -0.09 -1.88 9.68 22.21 0.21 -1.66 16 19 C -0.15 -3.20 10.06 22.45 0.23 -2.98 16 20 C 0.08 1.74 7.04 22.68 0.16 1.90 16 21 C -0.18 -3.90 6.27 -19.52 -0.12 -4.03 16 22 C -0.08 -1.73 9.70 22.18 0.22 -1.51 16 23 C -0.11 -1.53 7.12 30.73 0.22 -1.31 16 24 C 0.05 0.61 8.01 72.56 0.58 1.19 16 25 O -0.33 -7.08 11.10 -94.99 -1.05 -8.13 16 26 H 0.06 2.21 7.90 -2.39 -0.02 2.19 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 3.29 5.97 -2.39 -0.01 3.28 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 32 H 0.33 13.48 8.45 -89.70 -0.76 12.72 16 33 H 0.01 0.42 8.11 -2.38 -0.02 0.40 16 34 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 38 H 0.08 1.75 8.09 -2.38 -0.02 1.73 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 41 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -62.60 365.03 2.37 -60.23 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.20 Total: 24.43 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 3.81 Total: -38.50 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -2.61 Total: -83.38 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -1.05 Total: -8.13 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -62.60 2.37 -60.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193314574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.858 kcal (2) G-P(sol) polarization free energy of solvation -62.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds