Wall clock time and date at job start Tue Mar 31 2020 06:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.05114 * 2 1 4 4 C 1.53870 * 110.03028 * 238.58375 * 2 1 3 5 5 C 1.54267 * 106.59867 * 240.71417 * 4 2 1 6 6 C 1.53005 * 110.48755 * 142.29029 * 5 4 2 7 7 C 1.52998 * 110.48571 * 264.93233 * 5 4 2 8 8 C 1.54890 * 104.19555 * 23.61008 * 5 4 2 9 9 C 1.54261 * 110.03177 * 121.41426 * 2 1 3 10 10 H 1.09001 * 110.48789 * 214.48380 * 9 2 1 11 11 N 1.46504 * 110.48850 * 336.99752 * 9 2 1 12 12 C 1.39780 * 119.99918 * 204.99735 * 11 9 2 13 13 C 1.38950 * 120.00573 * 180.02562 * 12 11 9 14 14 C 1.38008 * 119.99382 * 180.02562 * 13 12 11 15 15 C 1.38903 * 120.00636 * 0.02562 * 14 13 12 16 16 O 1.35802 * 119.99115 * 179.70584 * 15 14 13 17 17 C 1.34810 * 117.00036 * 354.44076 * 16 15 14 18 18 H 1.08002 * 120.00171 * 5.05275 * 17 16 15 19 19 C 1.38619 * 120.00082 * 185.05027 * 17 16 15 20 20 N 1.31588 * 119.99580 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00157 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47018 * 90.00421 * 21 19 17 23 23 H 1.48503 * 109.47167 * 210.00038 * 21 19 17 24 24 H 1.48503 * 109.47286 * 330.00182 * 21 19 17 25 25 C 1.38898 * 120.01250 * 359.97109 * 15 14 13 26 26 C 1.38009 * 120.00514 * 0.02562 * 25 15 14 27 27 H 1.09004 * 109.47117 * 298.58148 * 1 2 3 28 28 H 1.08998 * 109.47369 * 58.58080 * 1 2 3 29 29 H 1.09007 * 109.47290 * 178.58638 * 1 2 3 30 30 H 1.08996 * 110.03585 * 0.02562 * 4 2 1 31 31 H 1.09001 * 110.03665 * 121.43143 * 4 2 1 32 32 H 1.09002 * 109.46855 * 60.00176 * 6 5 4 33 33 H 1.09001 * 109.46807 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.46679 * 299.99956 * 6 5 4 35 35 H 1.09003 * 109.47329 * 60.00036 * 7 5 4 36 36 H 1.09000 * 109.47118 * 179.97438 * 7 5 4 37 37 H 1.08996 * 109.47687 * 300.00052 * 7 5 4 38 38 H 1.08995 * 110.75754 * 203.74544 * 8 5 4 39 39 H 1.09002 * 110.75268 * 80.37280 * 8 5 4 40 40 H 0.96999 * 119.99796 * 24.99950 * 11 9 2 41 41 H 1.08000 * 120.00358 * 0.03930 * 13 12 11 42 42 H 1.08005 * 119.99591 * 179.97438 * 14 13 12 43 43 H 0.97002 * 119.99770 * 179.97438 * 20 19 17 44 44 H 1.07991 * 119.99505 * 180.02562 * 25 15 14 45 45 H 1.07998 * 120.00532 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0570 -0.7535 -1.2337 5 6 2.8874 -1.9406 -0.7035 6 6 2.6806 -3.1746 -1.5843 7 6 4.3704 -1.5701 -0.6384 8 6 2.3281 -2.1901 0.7191 9 6 2.0584 -0.7554 1.2369 10 1 2.9798 -0.2986 1.5980 11 7 1.0472 -0.7744 2.2968 12 6 1.4368 -0.9141 3.6319 13 6 0.4779 -0.9327 4.6373 14 6 0.8628 -1.0701 5.9555 15 6 2.2088 -1.1894 6.2772 16 8 2.5877 -1.3186 7.5749 17 6 1.6214 -1.2083 8.5085 18 1 0.5891 -1.1069 8.2078 19 6 1.9529 -1.2250 9.8544 20 7 3.2108 -1.3481 10.2206 21 14 0.6140 -1.0729 11.1480 22 1 0.1179 -2.4253 11.5083 23 1 1.1664 -0.4100 12.3566 24 1 -0.5068 -0.2622 10.6075 25 6 3.1676 -1.1709 5.2724 26 6 2.7832 -1.0336 3.9541 27 1 -0.3633 0.4917 0.9025 28 1 -0.3634 0.5357 -0.8770 29 1 -0.3634 -1.0274 -0.0254 30 1 1.2229 -1.1188 -1.8327 31 1 2.6867 -0.0954 -1.8325 32 1 2.9945 -2.9500 -2.6037 33 1 3.2736 -4.0022 -1.1951 34 1 1.6262 -3.4505 -1.5812 35 1 4.5033 -0.7187 0.0292 36 1 4.9409 -2.4191 -0.2619 37 1 4.7237 -1.3082 -1.6358 38 1 3.0675 -2.6930 1.3423 39 1 1.4031 -2.7651 0.6751 40 1 0.1074 -0.6900 2.0721 41 1 -0.5687 -0.8398 4.3872 42 1 0.1175 -1.0841 6.7370 43 1 3.4428 -1.3594 11.1624 44 1 4.2139 -1.2641 5.5229 45 1 3.5287 -1.0197 3.1728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235243111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:05 Heat of formation + Delta-G solvation = -14.466190 kcal Electronic energy + Delta-G solvation = -22930.945423 eV Core-core repulsion = 19720.306734 eV Total energy + Delta-G solvation = -3210.638689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00638 -38.73248 -36.73618 -34.49887 -32.50390 -31.83979 -30.24844 -28.90856 -27.57377 -27.23787 -26.28225 -25.05261 -23.77912 -21.99734 -20.86832 -19.26898 -18.94964 -17.71663 -17.16767 -16.51646 -15.58911 -15.39678 -14.45558 -14.36061 -14.16895 -14.13941 -13.61737 -13.43648 -13.34388 -13.09374 -12.89903 -12.66532 -12.47547 -12.28649 -12.13547 -12.06415 -11.74322 -11.56136 -11.37996 -11.13281 -11.02291 -10.83544 -10.75479 -10.66576 -10.55206 -10.50590 -10.43085 -10.26975 -9.18721 -9.09388 -8.38872 -8.12424 -6.33682 -6.28895 -3.86310 2.24898 2.62384 3.20295 3.21073 3.25621 3.87727 4.08689 4.30398 4.45327 4.65685 4.73904 4.94789 5.02787 5.07249 5.22993 5.26227 5.33522 5.39086 5.44754 5.48552 5.49745 5.53550 5.61419 5.70502 5.74594 5.78806 5.82421 5.89774 5.90567 5.94346 5.99460 6.09191 6.14893 6.26001 6.26827 6.31012 6.35777 6.61016 6.91317 6.97305 7.19171 7.36213 7.50272 7.69969 8.06138 8.15420 8.31937 9.16780 9.92081 10.89618 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033249 B = 0.003048 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.932620 B = 9184.091901 C = 9677.070572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 H 0.072 0.928 4 C -0.108 4.108 5 C -0.071 4.071 6 C -0.137 4.137 7 C -0.138 4.138 8 C -0.128 4.128 9 C 0.160 3.840 10 H 0.080 0.920 11 N -0.753 5.753 12 C 0.126 3.874 13 C -0.145 4.145 14 C -0.189 4.189 15 C 0.112 3.888 16 O -0.190 6.190 17 C -0.386 4.386 18 H 0.088 0.912 19 C 0.035 3.965 20 N -0.870 5.870 21 Si 0.937 3.063 22 H -0.275 1.275 23 H -0.279 1.279 24 H -0.269 1.269 25 C -0.150 4.150 26 C -0.146 4.146 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.392 0.608 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.267 0.733 44 H 0.116 0.884 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 0.628 -22.670 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 H 0.091 0.909 4 C -0.146 4.146 5 C -0.072 4.072 6 C -0.194 4.194 7 C -0.196 4.196 8 C -0.168 4.168 9 C 0.053 3.947 10 H 0.098 0.902 11 N -0.390 5.390 12 C 0.028 3.972 13 C -0.167 4.167 14 C -0.209 4.209 15 C 0.060 3.940 16 O -0.095 6.095 17 C -0.463 4.463 18 H 0.105 0.895 19 C -0.167 4.167 20 N -0.507 5.507 21 Si 0.762 3.238 22 H -0.201 1.201 23 H -0.204 1.204 24 H -0.194 1.194 25 C -0.170 4.170 26 C -0.169 4.169 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.228 0.772 41 H 0.122 0.878 42 H 0.144 0.856 43 H 0.076 0.924 44 H 0.134 0.866 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.687 0.588 -22.403 22.571 hybrid contribution -1.102 0.098 0.578 1.248 sum -3.788 0.686 -21.825 22.162 Atomic orbital electron populations 1.21829 0.95193 1.01857 1.01679 1.21925 0.96102 0.99467 0.94688 0.90912 1.22320 0.99156 0.96350 0.96799 1.21333 0.95300 0.95001 0.95541 1.21815 1.01474 0.97125 0.98996 1.21843 0.94648 1.01613 1.01463 1.23099 1.01020 0.98056 0.94586 1.21528 0.92109 0.94372 0.86678 0.90174 1.44549 1.07471 1.84838 1.02135 1.17431 0.92984 1.02939 0.83831 1.20220 0.97127 1.07311 0.92019 1.20981 0.96181 1.07899 0.95866 1.19232 0.92054 0.96417 0.86315 1.83985 1.36042 1.79537 1.09916 1.21228 0.88136 1.51721 0.85184 0.89504 1.25206 0.97362 0.97161 0.96992 1.70054 1.16346 1.47324 1.16946 0.85773 0.79645 0.78587 0.79747 1.20090 1.20428 1.19385 1.20028 0.98317 1.07784 0.90846 1.20201 0.93593 1.07675 0.95382 0.92057 0.92651 0.92406 0.91574 0.91848 0.92923 0.92666 0.92759 0.92389 0.92575 0.92871 0.91363 0.91259 0.77155 0.87798 0.85602 0.92351 0.86635 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 7.74 37.16 0.29 -0.97 16 2 C -0.10 -0.95 3.48 -89.51 -0.31 -1.26 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -0.88 5.59 -25.62 -0.14 -1.02 16 5 C -0.07 -0.62 0.90 -152.85 -0.14 -0.76 16 6 C -0.14 -1.08 8.46 37.16 0.31 -0.77 16 7 C -0.14 -1.16 8.40 37.16 0.31 -0.85 16 8 C -0.13 -1.38 5.48 -24.73 -0.14 -1.52 16 9 C 0.16 1.82 2.43 -66.27 -0.16 1.66 16 10 H 0.08 1.00 5.90 -51.93 -0.31 0.69 16 11 N -0.75 -10.16 5.08 -50.51 -0.26 -10.42 16 12 C 0.13 2.20 6.66 -83.70 -0.56 1.64 16 13 C -0.14 -2.72 9.89 -39.40 -0.39 -3.11 16 14 C -0.19 -4.23 9.16 -39.42 -0.36 -4.59 16 15 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 16 O -0.19 -5.58 9.76 -0.06 0.00 -5.58 16 17 C -0.39 -11.12 9.48 30.87 0.29 -10.82 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 19 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 20 N -0.87 -26.30 13.67 55.48 0.76 -25.55 16 21 Si 0.94 21.17 29.55 -169.99 -5.02 16.14 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.15 -3.26 9.98 -39.42 -0.39 -3.65 16 26 C -0.15 -2.69 9.21 -39.40 -0.36 -3.05 16 27 H 0.06 0.56 6.68 -51.93 -0.35 0.21 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.07 0.51 7.37 -51.93 -0.38 0.13 16 31 H 0.06 0.48 7.85 -51.93 -0.41 0.07 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.42 8.12 -51.93 -0.42 0.00 16 35 H 0.06 0.51 7.33 -51.93 -0.38 0.13 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 39 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 40 H 0.39 4.74 5.87 -40.82 -0.24 4.50 16 41 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.13 2.82 5.63 -52.48 -0.30 2.52 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 45 H 0.11 1.75 6.20 -52.49 -0.33 1.43 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -30.99 351.99 -8.47 -39.46 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.15 Total: 6.26 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -2.10 Total: -25.62 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.50 Total: -35.96 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.99 -8.47 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235243111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.993 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds