Wall clock time and date at job start Tue Mar 31 2020 06:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.05114 * 2 1 4 4 C 1.53870 * 110.03028 * 238.58375 * 2 1 3 5 5 C 1.54267 * 106.59867 * 240.71417 * 4 2 1 6 6 C 1.53005 * 110.48755 * 142.29029 * 5 4 2 7 7 C 1.52998 * 110.48571 * 264.93233 * 5 4 2 8 8 C 1.54890 * 104.19555 * 23.61008 * 5 4 2 9 9 C 1.54261 * 110.03177 * 121.41426 * 2 1 3 10 10 H 1.09001 * 110.48789 * 214.48380 * 9 2 1 11 11 N 1.46504 * 110.48850 * 336.99752 * 9 2 1 12 12 C 1.39780 * 119.99918 * 204.99735 * 11 9 2 13 13 C 1.38950 * 120.00573 * 180.02562 * 12 11 9 14 14 C 1.38008 * 119.99382 * 180.02562 * 13 12 11 15 15 C 1.38903 * 120.00636 * 0.02562 * 14 13 12 16 16 O 1.35802 * 119.99115 * 179.70584 * 15 14 13 17 17 C 1.34810 * 117.00036 * 354.44076 * 16 15 14 18 18 H 1.08002 * 120.00171 * 5.05275 * 17 16 15 19 19 C 1.38619 * 120.00082 * 185.05027 * 17 16 15 20 20 N 1.31588 * 119.99580 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00157 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47018 * 90.00421 * 21 19 17 23 23 H 1.48503 * 109.47167 * 210.00038 * 21 19 17 24 24 H 1.48503 * 109.47286 * 330.00182 * 21 19 17 25 25 C 1.38898 * 120.01250 * 359.97109 * 15 14 13 26 26 C 1.38009 * 120.00514 * 0.02562 * 25 15 14 27 27 H 1.09004 * 109.47117 * 298.58148 * 1 2 3 28 28 H 1.08998 * 109.47369 * 58.58080 * 1 2 3 29 29 H 1.09007 * 109.47290 * 178.58638 * 1 2 3 30 30 H 1.08996 * 110.03585 * 0.02562 * 4 2 1 31 31 H 1.09001 * 110.03665 * 121.43143 * 4 2 1 32 32 H 1.09002 * 109.46855 * 60.00176 * 6 5 4 33 33 H 1.09001 * 109.46807 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.46679 * 299.99956 * 6 5 4 35 35 H 1.09003 * 109.47329 * 60.00036 * 7 5 4 36 36 H 1.09000 * 109.47118 * 179.97438 * 7 5 4 37 37 H 1.08996 * 109.47687 * 300.00052 * 7 5 4 38 38 H 1.08995 * 110.75754 * 203.74544 * 8 5 4 39 39 H 1.09002 * 110.75268 * 80.37280 * 8 5 4 40 40 H 0.96999 * 119.99796 * 24.99950 * 11 9 2 41 41 H 1.08000 * 120.00358 * 0.03930 * 13 12 11 42 42 H 1.08005 * 119.99591 * 179.97438 * 14 13 12 43 43 H 0.97002 * 119.99770 * 179.97438 * 20 19 17 44 44 H 1.07991 * 119.99505 * 180.02562 * 25 15 14 45 45 H 1.07998 * 120.00532 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0570 -0.7535 -1.2337 5 6 2.8874 -1.9406 -0.7035 6 6 2.6806 -3.1746 -1.5843 7 6 4.3704 -1.5701 -0.6384 8 6 2.3281 -2.1901 0.7191 9 6 2.0584 -0.7554 1.2369 10 1 2.9798 -0.2986 1.5980 11 7 1.0472 -0.7744 2.2968 12 6 1.4368 -0.9141 3.6319 13 6 0.4779 -0.9327 4.6373 14 6 0.8628 -1.0701 5.9555 15 6 2.2088 -1.1894 6.2772 16 8 2.5877 -1.3186 7.5749 17 6 1.6214 -1.2083 8.5085 18 1 0.5891 -1.1069 8.2078 19 6 1.9529 -1.2250 9.8544 20 7 3.2108 -1.3481 10.2206 21 14 0.6140 -1.0729 11.1480 22 1 0.1179 -2.4253 11.5083 23 1 1.1664 -0.4100 12.3566 24 1 -0.5068 -0.2622 10.6075 25 6 3.1676 -1.1709 5.2724 26 6 2.7832 -1.0336 3.9541 27 1 -0.3633 0.4917 0.9025 28 1 -0.3634 0.5357 -0.8770 29 1 -0.3634 -1.0274 -0.0254 30 1 1.2229 -1.1188 -1.8327 31 1 2.6867 -0.0954 -1.8325 32 1 2.9945 -2.9500 -2.6037 33 1 3.2736 -4.0022 -1.1951 34 1 1.6262 -3.4505 -1.5812 35 1 4.5033 -0.7187 0.0292 36 1 4.9409 -2.4191 -0.2619 37 1 4.7237 -1.3082 -1.6358 38 1 3.0675 -2.6930 1.3423 39 1 1.4031 -2.7651 0.6751 40 1 0.1074 -0.6900 2.0721 41 1 -0.5687 -0.8398 4.3872 42 1 0.1175 -1.0841 6.7370 43 1 3.4428 -1.3594 11.1624 44 1 4.2139 -1.2641 5.5229 45 1 3.5287 -1.0197 3.1728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235243111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:05 Heat of formation + Delta-G solvation = -31.539326 kcal Electronic energy + Delta-G solvation = -22931.685770 eV Core-core repulsion = 19720.306734 eV Total energy + Delta-G solvation = -3211.379035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06146 -40.29828 -38.36712 -35.66433 -34.18136 -33.21470 -31.85825 -29.99047 -28.63073 -28.09186 -27.41445 -26.79189 -24.77891 -23.55418 -22.44496 -20.39840 -19.70123 -19.43772 -18.85167 -17.99915 -16.79347 -16.38538 -16.19243 -15.72882 -15.41707 -15.30042 -14.92260 -14.86736 -14.48267 -14.33127 -14.08412 -13.80556 -13.63004 -13.47459 -13.40026 -13.12979 -12.90495 -12.75851 -12.72352 -12.46796 -12.29578 -12.11376 -12.05769 -11.78020 -11.42683 -11.40073 -11.36156 -11.17526 -11.06102 -10.84062 -10.10288 -9.76793 -8.38790 -7.89620 -6.02325 0.59341 0.94748 1.36635 1.46593 1.54199 2.23064 2.69544 2.91987 3.25797 3.54320 3.67105 3.73540 3.90603 4.12808 4.16571 4.23434 4.32037 4.39636 4.49598 4.55558 4.56445 4.62684 4.70028 4.75540 4.84260 4.88627 4.94436 4.96205 5.08160 5.09340 5.14430 5.15865 5.20714 5.22337 5.28753 5.30049 5.41581 5.44922 5.50674 5.53302 5.57764 5.62001 5.79535 6.01674 6.12145 6.67454 7.05821 7.08902 7.94393 8.85899 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033249 B = 0.003048 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.932620 B = 9184.091901 C = 9677.070572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.103 4.103 5 C -0.067 4.067 6 C -0.136 4.136 7 C -0.140 4.140 8 C -0.127 4.127 9 C 0.152 3.848 10 H 0.073 0.927 11 N -0.739 5.739 12 C 0.155 3.845 13 C -0.148 4.148 14 C -0.192 4.192 15 C 0.061 3.939 16 O -0.243 6.243 17 C -0.406 4.406 18 H 0.098 0.902 19 C -0.029 4.029 20 N -0.928 5.928 21 Si 1.017 2.983 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.254 1.254 25 C -0.155 4.155 26 C -0.146 4.146 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.403 0.597 41 H 0.138 0.862 42 H 0.118 0.882 43 H 0.269 0.731 44 H 0.111 0.889 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 1.177 -25.764 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.141 4.141 5 C -0.068 4.068 6 C -0.193 4.193 7 C -0.197 4.197 8 C -0.166 4.166 9 C 0.046 3.954 10 H 0.091 0.909 11 N -0.374 5.374 12 C 0.054 3.946 13 C -0.170 4.170 14 C -0.212 4.212 15 C 0.012 3.988 16 O -0.151 6.151 17 C -0.483 4.483 18 H 0.115 0.885 19 C -0.225 4.225 20 N -0.567 5.567 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.177 1.177 25 C -0.175 4.175 26 C -0.168 4.168 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.242 0.758 41 H 0.155 0.845 42 H 0.136 0.864 43 H 0.078 0.922 44 H 0.129 0.871 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.689 1.142 -25.604 26.055 hybrid contribution -0.482 -0.061 1.128 1.229 sum -5.171 1.081 -24.476 25.040 Atomic orbital electron populations 1.21828 0.94414 1.02138 1.02143 1.21899 0.96713 0.99330 0.93729 0.90656 1.22301 0.99485 0.95954 0.96350 1.21307 0.95430 0.95786 0.94230 1.21803 1.01559 0.96502 0.99427 1.21857 0.94491 1.01207 1.02120 1.23041 1.00563 0.97108 0.95879 1.21742 0.91367 0.95391 0.86925 0.90924 1.44681 1.08835 1.83029 1.00894 1.17560 0.92353 0.99204 0.85475 1.20482 0.99147 1.06715 0.90698 1.21044 0.94951 1.07770 0.97403 1.19714 0.93990 0.99645 0.85490 1.83933 1.37154 1.82319 1.11743 1.21755 0.88799 1.51767 0.85931 0.88476 1.26532 1.00209 0.96550 0.99207 1.70212 1.19063 1.49904 1.17566 0.84611 0.76411 0.79167 0.76157 1.18933 1.19741 1.17729 1.20223 0.97875 1.07611 0.91775 1.20428 0.94936 1.06929 0.94493 0.92635 0.91151 0.92251 0.90621 0.90761 0.91699 0.93149 0.92595 0.92927 0.93071 0.91548 0.92909 0.91577 0.75801 0.84451 0.86377 0.92167 0.87094 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 7.74 71.98 0.56 -1.40 16 2 C -0.10 -1.46 3.48 -10.07 -0.04 -1.49 16 3 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.10 -1.29 5.59 31.32 0.17 -1.11 16 5 C -0.07 -0.97 0.90 -51.11 -0.05 -1.02 16 6 C -0.14 -1.77 8.46 71.98 0.61 -1.16 16 7 C -0.14 -2.01 8.40 71.98 0.60 -1.41 16 8 C -0.13 -2.43 5.48 31.89 0.17 -2.26 16 9 C 0.15 3.03 2.43 46.07 0.11 3.14 16 10 H 0.07 1.61 5.90 -2.39 -0.01 1.60 16 11 N -0.74 -17.65 5.08 -313.72 -1.59 -19.24 16 12 C 0.16 5.08 6.66 38.22 0.25 5.33 16 13 C -0.15 -5.31 9.89 22.39 0.22 -5.09 16 14 C -0.19 -8.69 9.16 22.37 0.20 -8.49 16 15 C 0.06 3.18 6.65 22.59 0.15 3.33 16 16 O -0.24 -15.26 9.76 -23.11 -0.23 -15.49 16 17 C -0.41 -24.53 9.48 67.91 0.64 -23.89 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 19 C -0.03 -1.71 5.49 84.82 0.47 -1.24 16 20 N -0.93 -58.96 13.67 21.61 0.30 -58.66 16 21 Si 1.02 44.41 29.55 68.60 2.03 46.43 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 25 C -0.16 -6.94 9.98 22.37 0.22 -6.72 16 26 C -0.15 -5.21 9.21 22.39 0.21 -5.00 16 27 H 0.05 0.81 6.68 -2.38 -0.02 0.79 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.78 8.09 -2.38 -0.02 0.76 16 30 H 0.08 0.84 7.37 -2.39 -0.02 0.83 16 31 H 0.07 0.81 7.85 -2.39 -0.02 0.80 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.71 8.12 -2.39 -0.02 0.69 16 35 H 0.05 0.81 7.33 -2.39 -0.02 0.79 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 1.18 8.05 -2.39 -0.02 1.16 16 39 H 0.07 1.32 8.04 -2.39 -0.02 1.31 16 40 H 0.40 8.25 5.87 -92.71 -0.54 7.70 16 41 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.12 5.42 5.63 -2.91 -0.02 5.41 16 43 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.11 4.92 8.06 -2.92 -0.02 4.90 16 45 H 0.14 4.14 6.20 -2.91 -0.02 4.12 16 Total: -1.00 -71.58 351.99 5.46 -66.12 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.43 Total: 29.31 kcal Atomic # 6 Polarization: -53.00 SS G_CDS: 4.52 Total: -48.47 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -1.30 Total: -77.90 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.23 Total: -15.49 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.58 5.46 -66.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235243111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.582 kcal (2) G-P(sol) polarization free energy of solvation -71.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds