Wall clock time and date at job start Tue Mar 31 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.81714 * 2 1 4 4 C 1.54895 * 110.75775 * 236.66761 * 2 1 3 5 5 C 1.54259 * 104.19425 * 203.74373 * 4 2 1 6 6 C 1.53010 * 110.03252 * 264.32419 * 5 4 2 7 7 C 1.53002 * 110.07543 * 142.92023 * 5 4 2 8 8 C 1.53872 * 106.60111 * 23.60751 * 5 4 2 9 9 C 1.54261 * 106.59904 * 0.02562 * 8 5 4 10 10 H 1.09000 * 110.48857 * 217.57685 * 9 8 5 11 11 N 1.46502 * 110.48913 * 95.06405 * 9 8 5 12 12 C 1.39675 * 119.99797 * 86.45298 * 11 9 8 13 13 C 1.39006 * 120.03786 * 359.97438 * 12 11 9 14 14 C 1.38155 * 120.05748 * 180.02562 * 13 12 11 15 15 C 1.38172 * 120.14436 * 359.72442 * 14 13 12 16 16 C 1.38914 * 120.07930 * 0.54892 * 15 14 13 17 17 O 1.35745 * 120.03107 * 179.71936 * 16 15 14 18 18 C 1.34833 * 116.99827 * 185.26446 * 17 16 15 19 19 H 1.08004 * 120.00060 * 354.94991 * 18 17 16 20 20 C 1.38649 * 120.00026 * 174.94393 * 18 17 16 21 21 N 1.31561 * 119.99772 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00112 * 179.72730 * 20 18 17 23 23 H 1.48505 * 109.47007 * 180.27654 * 22 20 18 24 24 H 1.48498 * 109.46999 * 300.27577 * 22 20 18 25 25 H 1.48498 * 109.47028 * 60.27770 * 22 20 18 26 26 C 1.38741 * 120.04083 * 180.02562 * 12 11 9 27 27 H 1.08997 * 109.47300 * 296.66434 * 1 2 3 28 28 H 1.09006 * 109.46887 * 56.66246 * 1 2 3 29 29 H 1.08999 * 109.46934 * 176.65467 * 1 2 3 30 30 H 1.08998 * 110.48532 * 85.06134 * 4 2 1 31 31 H 1.09002 * 110.48571 * 322.42274 * 4 2 1 32 32 H 1.09004 * 109.46781 * 178.62456 * 6 5 4 33 33 H 1.09001 * 109.46849 * 298.62298 * 6 5 4 34 34 H 1.08990 * 109.46766 * 58.62044 * 6 5 4 35 35 H 1.09007 * 109.46583 * 301.35368 * 7 5 4 36 36 H 1.08998 * 109.47152 * 61.34979 * 7 5 4 37 37 H 1.08994 * 109.47837 * 181.35652 * 7 5 4 38 38 H 1.08998 * 110.03172 * 240.71620 * 8 5 4 39 39 H 1.09006 * 110.02992 * 119.28206 * 8 5 4 40 40 H 0.96996 * 120.00095 * 266.45628 * 11 9 8 41 41 H 1.08000 * 119.97470 * 359.97438 * 13 12 11 42 42 H 1.08006 * 119.92427 * 179.97438 * 14 13 12 43 43 H 1.08001 * 119.96138 * 180.27754 * 15 14 13 44 44 H 0.97001 * 120.00052 * 359.72665 * 21 20 18 45 45 H 1.07999 * 120.07426 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0189 0.0000 4 6 2.0790 -0.7959 -1.2101 5 6 3.4931 -1.2268 -0.7694 6 6 4.5312 -0.2323 -1.2935 7 6 3.8016 -2.6307 -1.2936 8 6 3.4931 -1.2268 0.7693 9 6 2.0787 -0.7966 1.2100 10 1 2.1313 -0.1618 2.0945 11 7 1.2439 -1.9715 1.4725 12 6 1.2629 -2.5742 2.7324 13 6 2.0741 -2.0604 3.7374 14 6 2.0937 -2.6566 4.9835 15 6 1.3034 -3.7614 5.2366 16 6 0.4948 -4.2832 4.2348 17 8 -0.2770 -5.3720 4.4829 18 6 -0.9537 -5.8931 3.4396 19 1 -0.9324 -5.3974 2.4803 20 6 -1.6769 -7.0654 3.5983 21 7 -1.7031 -7.6690 4.7669 22 14 -2.6207 -7.7833 2.1549 23 1 -3.3110 -9.0262 2.5838 24 1 -3.6251 -6.7976 1.6809 25 1 -1.6763 -8.0968 1.0526 26 6 0.4730 -3.6872 2.9818 27 1 -0.3634 0.4612 0.9183 28 1 -0.3633 0.5648 -0.8586 29 1 -0.3633 -1.0259 -0.0600 30 1 2.1320 -0.1591 -2.0932 31 1 1.4574 -1.6698 -1.4056 32 1 5.5236 -0.5318 -0.9565 33 1 4.5055 -0.2207 -2.3831 34 1 4.3038 0.7638 -0.9141 35 1 3.0579 -3.3316 -0.9143 36 1 3.7739 -2.6259 -2.3833 37 1 4.7925 -2.9348 -0.9567 38 1 4.2325 -0.5184 1.1427 39 1 3.7119 -2.2273 1.1426 40 1 0.6779 -2.3307 0.7715 41 1 2.6903 -1.1948 3.5438 42 1 2.7251 -2.2558 5.7628 43 1 1.3176 -4.2224 6.2132 44 1 -1.2133 -7.2961 5.5165 45 1 -0.1579 -4.0888 2.2026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235244988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:07 Heat of formation + Delta-G solvation = -27.596283 kcal Electronic energy + Delta-G solvation = -23407.590115 eV Core-core repulsion = 20196.382063 eV Total energy + Delta-G solvation = -3211.208052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01706 -38.80716 -36.74925 -34.56222 -32.69280 -32.03458 -29.87029 -28.49306 -27.66226 -27.35153 -26.60903 -24.78470 -23.48239 -21.69282 -21.16572 -19.47766 -18.87197 -18.06777 -17.47615 -15.86799 -15.64453 -14.99454 -14.64168 -14.45364 -14.25339 -14.05908 -13.78938 -13.70383 -13.52496 -13.26207 -12.95456 -12.80877 -12.64093 -12.46015 -12.01664 -11.86047 -11.59823 -11.23482 -11.13800 -10.99153 -10.89950 -10.72071 -10.65713 -10.56606 -10.48864 -10.35094 -10.30759 -10.26132 -9.38675 -9.35238 -8.66885 -7.36457 -6.75014 -6.69515 -3.98895 2.37489 2.56502 3.25863 3.31528 3.47667 3.81848 4.17291 4.29567 4.46649 4.63236 4.74319 4.97304 5.06022 5.16546 5.18991 5.26680 5.31013 5.37821 5.48047 5.48776 5.55027 5.58139 5.68318 5.70086 5.77484 5.82908 5.84706 5.92382 5.97533 6.01526 6.04726 6.16454 6.18219 6.25455 6.27154 6.36657 6.42801 6.64158 6.67708 7.05478 7.26285 7.37944 7.59584 7.71727 8.04978 8.23109 8.49452 9.01034 9.72118 10.74739 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.004248 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.282498 B = 6589.821372 C = 7369.867323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.111 4.111 5 C -0.067 4.067 6 C -0.137 4.137 7 C -0.139 4.139 8 C -0.133 4.133 9 C 0.158 3.842 10 H 0.079 0.921 11 N -0.740 5.740 12 C 0.254 3.746 13 C -0.278 4.278 14 C -0.040 4.040 15 C -0.242 4.242 16 C 0.193 3.807 17 O -0.204 6.204 18 C -0.469 4.469 19 H 0.082 0.918 20 C 0.009 3.991 21 N -0.885 5.885 22 Si 1.095 2.905 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.283 1.283 26 C -0.300 4.300 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.393 0.607 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.282 0.718 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.092 15.311 -11.954 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.101 0.899 4 C -0.148 4.148 5 C -0.068 4.068 6 C -0.194 4.194 7 C -0.196 4.196 8 C -0.172 4.172 9 C 0.051 3.949 10 H 0.096 0.904 11 N -0.371 5.371 12 C 0.152 3.848 13 C -0.300 4.300 14 C -0.059 4.059 15 C -0.263 4.263 16 C 0.139 3.861 17 O -0.108 6.108 18 C -0.545 4.545 19 H 0.099 0.901 20 C -0.196 4.196 21 N -0.518 5.518 22 Si 0.919 3.081 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.209 1.209 26 C -0.324 4.324 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.228 0.772 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.092 0.908 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.151 14.016 -12.178 20.278 hybrid contribution 0.906 1.237 0.059 1.535 sum 9.057 15.253 -12.119 21.484 Atomic orbital electron populations 1.21688 0.94544 1.02063 1.01573 1.22358 0.95964 0.99020 0.94790 0.89902 1.22576 0.95376 0.99563 0.97330 1.21125 0.94942 0.95352 0.95333 1.21911 0.98389 0.98673 1.00454 1.21904 1.01609 0.95801 1.00276 1.22867 0.97433 1.02617 0.94304 1.21521 0.89450 0.87002 0.96919 0.90352 1.44589 1.49267 1.32083 1.11181 1.17453 0.92359 0.90440 0.84542 1.20107 1.09441 1.06011 0.94471 1.20368 0.96117 0.93872 0.95514 1.19999 1.04705 1.02364 0.99193 1.18911 0.88308 0.86769 0.92105 1.83673 1.52365 1.37785 1.37013 1.22157 1.31030 1.10525 0.90769 0.90079 1.26475 0.97312 0.92363 1.03482 1.70566 1.39262 1.40247 1.01683 0.83125 0.75802 0.76661 0.72507 1.19820 1.20849 1.20869 1.20494 1.10410 1.01975 0.99473 0.92385 0.92889 0.92384 0.91766 0.91453 0.92833 0.92988 0.92719 0.92312 0.93105 0.92870 0.91592 0.90661 0.77165 0.87743 0.87288 0.87227 0.90833 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.86 37.16 0.33 -1.08 16 2 C -0.10 -0.98 3.35 -88.61 -0.30 -1.28 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -1.03 5.26 -25.07 -0.13 -1.16 16 5 C -0.07 -0.65 0.94 -153.39 -0.14 -0.79 16 6 C -0.14 -1.12 8.14 37.16 0.30 -0.82 16 7 C -0.14 -1.42 8.16 37.16 0.30 -1.11 16 8 C -0.13 -1.48 5.84 -25.62 -0.15 -1.63 16 9 C 0.16 1.86 2.57 -66.26 -0.17 1.69 16 10 H 0.08 0.97 6.61 -51.93 -0.34 0.62 16 11 N -0.74 -10.83 4.67 -50.57 -0.24 -11.07 16 12 C 0.25 4.74 6.65 -83.81 -0.56 4.18 16 13 C -0.28 -4.95 9.22 -39.33 -0.36 -5.32 16 14 C -0.04 -0.74 10.03 -39.64 -0.40 -1.14 16 15 C -0.24 -5.33 9.99 -39.36 -0.39 -5.72 16 16 C 0.19 4.83 6.64 -39.13 -0.26 4.57 16 17 O -0.20 -5.93 9.16 0.06 0.00 -5.93 16 18 C -0.47 -13.51 9.49 30.88 0.29 -13.21 16 19 H 0.08 2.21 5.20 -52.48 -0.27 1.93 16 20 C 0.01 0.24 5.49 -17.52 -0.10 0.15 16 21 N -0.89 -26.98 13.70 55.48 0.76 -26.22 16 22 Si 1.09 24.17 29.92 -169.99 -5.09 19.09 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 26 C -0.30 -6.74 9.01 -39.20 -0.35 -7.10 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.63 6.44 -51.93 -0.33 0.29 16 30 H 0.06 0.53 7.84 -51.93 -0.41 0.13 16 31 H 0.07 0.68 7.72 -51.93 -0.40 0.28 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 39 H 0.07 1.02 7.58 -51.93 -0.39 0.62 16 40 H 0.39 5.58 7.00 -40.82 -0.29 5.29 16 41 H 0.10 1.61 6.28 -52.49 -0.33 1.28 16 42 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 43 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 44 H 0.28 8.79 7.97 -40.82 -0.33 8.47 16 45 H 0.12 2.83 5.64 -52.49 -0.30 2.54 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -30.74 353.73 -8.55 -39.28 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.23 Total: 9.29 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: -2.08 Total: -29.77 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.52 Total: -37.29 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: 0.00 Total: -5.93 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.09 Total: 19.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.74 -8.55 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235244988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.688 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds