Wall clock time and date at job start Tue Mar 31 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.81714 * 2 1 4 4 C 1.54895 * 110.75775 * 236.66761 * 2 1 3 5 5 C 1.54259 * 104.19425 * 203.74373 * 4 2 1 6 6 C 1.53010 * 110.03252 * 264.32419 * 5 4 2 7 7 C 1.53002 * 110.07543 * 142.92023 * 5 4 2 8 8 C 1.53872 * 106.60111 * 23.60751 * 5 4 2 9 9 C 1.54261 * 106.59904 * 0.02562 * 8 5 4 10 10 H 1.09000 * 110.48857 * 217.57685 * 9 8 5 11 11 N 1.46502 * 110.48913 * 95.06405 * 9 8 5 12 12 C 1.39675 * 119.99797 * 86.45298 * 11 9 8 13 13 C 1.39006 * 120.03786 * 359.97438 * 12 11 9 14 14 C 1.38155 * 120.05748 * 180.02562 * 13 12 11 15 15 C 1.38172 * 120.14436 * 359.72442 * 14 13 12 16 16 C 1.38914 * 120.07930 * 0.54892 * 15 14 13 17 17 O 1.35745 * 120.03107 * 179.71936 * 16 15 14 18 18 C 1.34833 * 116.99827 * 185.26446 * 17 16 15 19 19 H 1.08004 * 120.00060 * 354.94991 * 18 17 16 20 20 C 1.38649 * 120.00026 * 174.94393 * 18 17 16 21 21 N 1.31561 * 119.99772 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00112 * 179.72730 * 20 18 17 23 23 H 1.48505 * 109.47007 * 180.27654 * 22 20 18 24 24 H 1.48498 * 109.46999 * 300.27577 * 22 20 18 25 25 H 1.48498 * 109.47028 * 60.27770 * 22 20 18 26 26 C 1.38741 * 120.04083 * 180.02562 * 12 11 9 27 27 H 1.08997 * 109.47300 * 296.66434 * 1 2 3 28 28 H 1.09006 * 109.46887 * 56.66246 * 1 2 3 29 29 H 1.08999 * 109.46934 * 176.65467 * 1 2 3 30 30 H 1.08998 * 110.48532 * 85.06134 * 4 2 1 31 31 H 1.09002 * 110.48571 * 322.42274 * 4 2 1 32 32 H 1.09004 * 109.46781 * 178.62456 * 6 5 4 33 33 H 1.09001 * 109.46849 * 298.62298 * 6 5 4 34 34 H 1.08990 * 109.46766 * 58.62044 * 6 5 4 35 35 H 1.09007 * 109.46583 * 301.35368 * 7 5 4 36 36 H 1.08998 * 109.47152 * 61.34979 * 7 5 4 37 37 H 1.08994 * 109.47837 * 181.35652 * 7 5 4 38 38 H 1.08998 * 110.03172 * 240.71620 * 8 5 4 39 39 H 1.09006 * 110.02992 * 119.28206 * 8 5 4 40 40 H 0.96996 * 120.00095 * 266.45628 * 11 9 8 41 41 H 1.08000 * 119.97470 * 359.97438 * 13 12 11 42 42 H 1.08006 * 119.92427 * 179.97438 * 14 13 12 43 43 H 1.08001 * 119.96138 * 180.27754 * 15 14 13 44 44 H 0.97001 * 120.00052 * 359.72665 * 21 20 18 45 45 H 1.07999 * 120.07426 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0189 0.0000 4 6 2.0790 -0.7959 -1.2101 5 6 3.4931 -1.2268 -0.7694 6 6 4.5312 -0.2323 -1.2935 7 6 3.8016 -2.6307 -1.2936 8 6 3.4931 -1.2268 0.7693 9 6 2.0787 -0.7966 1.2100 10 1 2.1313 -0.1618 2.0945 11 7 1.2439 -1.9715 1.4725 12 6 1.2629 -2.5742 2.7324 13 6 2.0741 -2.0604 3.7374 14 6 2.0937 -2.6566 4.9835 15 6 1.3034 -3.7614 5.2366 16 6 0.4948 -4.2832 4.2348 17 8 -0.2770 -5.3720 4.4829 18 6 -0.9537 -5.8931 3.4396 19 1 -0.9324 -5.3974 2.4803 20 6 -1.6769 -7.0654 3.5983 21 7 -1.7031 -7.6690 4.7669 22 14 -2.6207 -7.7833 2.1549 23 1 -3.3110 -9.0262 2.5838 24 1 -3.6251 -6.7976 1.6809 25 1 -1.6763 -8.0968 1.0526 26 6 0.4730 -3.6872 2.9818 27 1 -0.3634 0.4612 0.9183 28 1 -0.3633 0.5648 -0.8586 29 1 -0.3633 -1.0259 -0.0600 30 1 2.1320 -0.1591 -2.0932 31 1 1.4574 -1.6698 -1.4056 32 1 5.5236 -0.5318 -0.9565 33 1 4.5055 -0.2207 -2.3831 34 1 4.3038 0.7638 -0.9141 35 1 3.0579 -3.3316 -0.9143 36 1 3.7739 -2.6259 -2.3833 37 1 4.7925 -2.9348 -0.9567 38 1 4.2325 -0.5184 1.1427 39 1 3.7119 -2.2273 1.1426 40 1 0.6779 -2.3307 0.7715 41 1 2.6903 -1.1948 3.5438 42 1 2.7251 -2.2558 5.7628 43 1 1.3176 -4.2224 6.2132 44 1 -1.2133 -7.2961 5.5165 45 1 -0.1579 -4.0888 2.2026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235244988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:07 Heat of formation + Delta-G solvation = -44.467132 kcal Electronic energy + Delta-G solvation = -23408.321690 eV Core-core repulsion = 20196.382063 eV Total energy + Delta-G solvation = -3211.939627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17288 -40.39320 -38.41892 -35.77537 -34.27291 -33.57839 -31.20011 -30.00856 -28.95898 -28.11668 -27.41002 -26.85430 -24.44804 -23.40372 -22.63062 -20.78407 -19.78497 -19.67128 -19.04468 -17.44372 -16.84235 -16.64878 -16.10547 -15.72492 -15.61128 -15.42219 -15.31712 -14.92122 -14.67207 -14.52284 -14.15396 -13.99180 -13.58500 -13.53309 -13.28807 -12.90886 -12.67657 -12.58927 -12.44183 -12.34189 -12.24469 -12.10138 -11.94684 -11.70626 -11.60250 -11.48359 -11.36707 -11.29310 -11.16924 -10.86727 -10.58394 -9.18003 -8.92838 -8.23183 -6.22810 0.71468 0.87349 1.46319 1.59874 1.77072 2.35985 2.55581 2.90672 3.20869 3.41402 3.47341 3.67629 3.84001 4.15044 4.17695 4.30160 4.33773 4.39239 4.46296 4.53310 4.57968 4.67010 4.69323 4.73970 4.80500 4.83480 4.87192 4.94671 4.99595 5.05071 5.07775 5.13408 5.14926 5.21896 5.25446 5.26990 5.38666 5.41768 5.46468 5.49675 5.61890 5.73774 5.82242 5.96412 6.28950 6.62403 6.85985 6.90084 7.67793 8.52248 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.004248 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.282498 B = 6589.821372 C = 7369.867323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.106 0.894 4 C -0.109 4.109 5 C -0.065 4.065 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.130 4.130 9 C 0.149 3.851 10 H 0.083 0.917 11 N -0.728 5.728 12 C 0.263 3.737 13 C -0.260 4.260 14 C -0.026 4.026 15 C -0.266 4.266 16 C 0.155 3.845 17 O -0.254 6.254 18 C -0.484 4.484 19 H 0.087 0.913 20 C -0.046 4.046 21 N -0.919 5.919 22 Si 1.144 2.856 23 H -0.272 1.272 24 H -0.260 1.260 25 H -0.262 1.262 26 C -0.317 4.317 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.395 0.605 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.106 0.894 44 H 0.259 0.741 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.743 18.692 -14.321 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.124 0.876 4 C -0.146 4.146 5 C -0.065 4.065 6 C -0.191 4.191 7 C -0.196 4.196 8 C -0.169 4.169 9 C 0.044 3.956 10 H 0.101 0.899 11 N -0.357 5.357 12 C 0.158 3.842 13 C -0.283 4.283 14 C -0.044 4.044 15 C -0.287 4.287 16 C 0.105 3.895 17 O -0.161 6.161 18 C -0.560 4.560 19 H 0.105 0.895 20 C -0.241 4.241 21 N -0.554 5.554 22 Si 0.960 3.040 23 H -0.196 1.196 24 H -0.185 1.185 25 H -0.186 1.186 26 C -0.341 4.341 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.231 0.769 41 H 0.160 0.840 42 H 0.170 0.830 43 H 0.124 0.876 44 H 0.068 0.932 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.849 17.479 -14.585 24.804 hybrid contribution 0.626 0.504 0.737 1.091 sum 10.475 17.983 -13.848 24.997 Atomic orbital electron populations 1.21685 0.94937 1.01328 1.01952 1.22346 0.95527 0.99737 0.93472 0.87612 1.22569 0.94790 0.99386 0.97900 1.21112 0.95799 0.95313 0.94271 1.21878 0.97672 0.98530 1.00987 1.21898 1.00750 0.95957 1.00977 1.22827 0.97088 1.01486 0.95473 1.21833 0.89588 0.85916 0.98303 0.89889 1.44750 1.49018 1.32337 1.09619 1.17524 0.91061 0.89148 0.86434 1.20579 1.08097 1.06096 0.93507 1.20837 0.94758 0.91929 0.96919 1.20241 1.05712 1.04035 0.98667 1.19519 0.89284 0.86566 0.94163 1.83648 1.54678 1.40115 1.37682 1.22538 1.31210 1.10996 0.91259 0.89518 1.28367 0.97819 0.92648 1.05291 1.70707 1.41281 1.41245 1.02210 0.82605 0.75350 0.76367 0.69704 1.19646 1.18482 1.18637 1.20498 1.11592 1.03599 0.98367 0.93180 0.91212 0.93858 0.90016 0.92675 0.92820 0.92195 0.91597 0.94532 0.92009 0.93056 0.89806 0.93268 0.76941 0.83978 0.83004 0.87617 0.93236 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.86 71.98 0.64 -1.81 16 2 C -0.09 -1.42 3.35 -9.49 -0.03 -1.46 16 3 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 4 C -0.11 -1.66 5.26 31.67 0.17 -1.50 16 5 C -0.06 -1.05 0.94 -51.46 -0.05 -1.09 16 6 C -0.13 -1.65 8.14 71.99 0.59 -1.06 16 7 C -0.14 -2.60 8.16 71.98 0.59 -2.01 16 8 C -0.13 -2.47 5.84 31.32 0.18 -2.28 16 9 C 0.15 3.00 2.57 46.07 0.12 3.12 16 10 H 0.08 1.66 6.61 -2.39 -0.02 1.64 16 11 N -0.73 -20.10 4.67 -313.92 -1.47 -21.56 16 12 C 0.26 9.52 6.65 38.20 0.25 9.78 16 13 C -0.26 -8.48 9.22 22.43 0.21 -8.28 16 14 C -0.03 -0.90 10.03 22.23 0.22 -0.68 16 15 C -0.27 -11.92 9.99 22.42 0.22 -11.69 16 16 C 0.16 8.15 6.64 22.56 0.15 8.30 16 17 O -0.25 -15.81 9.16 -22.72 -0.21 -16.02 16 18 C -0.48 -29.50 9.49 67.92 0.64 -28.86 16 19 H 0.09 4.97 5.20 -2.91 -0.02 4.96 16 20 C -0.05 -2.71 5.49 84.83 0.47 -2.24 16 21 N -0.92 -59.29 13.70 21.61 0.30 -58.99 16 22 Si 1.14 49.68 29.92 68.60 2.05 51.73 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 25 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 26 C -0.32 -14.66 9.01 22.52 0.20 -14.45 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.04 0.87 6.44 -2.39 -0.02 0.85 16 30 H 0.08 1.01 7.84 -2.39 -0.02 0.99 16 31 H 0.05 0.99 7.72 -2.39 -0.02 0.97 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.33 7.67 -2.39 -0.02 1.31 16 39 H 0.05 1.21 7.58 -2.38 -0.02 1.20 16 40 H 0.40 10.88 7.00 -92.71 -0.65 10.23 16 41 H 0.14 3.64 6.28 -2.91 -0.02 3.62 16 42 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 43 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 44 H 0.26 17.46 7.97 -92.71 -0.74 16.72 16 45 H 0.11 5.23 5.64 -2.91 -0.02 5.22 16 Total: -1.00 -72.53 353.73 5.60 -66.93 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.36 Total: 34.14 kcal Atomic # 6 Polarization: -60.79 SS G_CDS: 4.57 Total: -56.22 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -1.17 Total: -80.56 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.21 Total: -16.02 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.05 Total: 51.73 kcal Total: -72.53 5.60 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235244988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.463 kcal (2) G-P(sol) polarization free energy of solvation -72.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds