Wall clock time and date at job start Tue Mar 31 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.53826 * 2 1 4 4 C 1.54889 * 110.48401 * 237.39462 * 2 1 3 5 5 C 1.54968 * 102.77926 * 203.40430 * 4 2 1 6 6 C 1.52994 * 110.47667 * 279.23286 * 5 4 2 7 7 C 1.52993 * 110.53022 * 156.56267 * 5 4 2 8 8 C 1.54272 * 104.15655 * 37.88211 * 5 4 2 9 9 C 1.53872 * 106.64127 * 336.45210 * 8 5 4 10 10 H 1.08996 * 110.03410 * 119.26254 * 9 8 5 11 11 N 1.46504 * 110.02539 * 240.64057 * 9 8 5 12 12 C 1.39782 * 120.00147 * 273.54109 * 11 9 8 13 13 C 1.38952 * 120.00097 * 359.72894 * 12 11 9 14 14 C 1.38014 * 119.98879 * 179.76490 * 13 12 11 15 15 C 1.38896 * 120.00951 * 0.51053 * 14 13 12 16 16 O 1.35794 * 119.99705 * 179.76777 * 15 14 13 17 17 C 1.34813 * 117.00013 * 174.43298 * 16 15 14 18 18 H 1.07999 * 120.00134 * 5.05900 * 17 16 15 19 19 C 1.38620 * 120.00209 * 185.05102 * 17 16 15 20 20 N 1.31581 * 120.00039 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00449 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47217 * 90.00070 * 21 19 17 23 23 H 1.48497 * 109.47337 * 210.00612 * 21 19 17 24 24 H 1.48507 * 109.46713 * 330.00405 * 21 19 17 25 25 C 1.38904 * 120.01058 * 359.73990 * 15 14 13 26 26 C 1.38008 * 120.00270 * 0.02562 * 25 15 14 27 27 H 1.09005 * 109.46593 * 297.38346 * 1 2 3 28 28 H 1.08998 * 109.47184 * 57.38116 * 1 2 3 29 29 H 1.08990 * 109.47169 * 177.38687 * 1 2 3 30 30 H 1.09007 * 110.75316 * 321.68871 * 4 2 1 31 31 H 1.09001 * 110.75950 * 84.87769 * 4 2 1 32 32 H 1.08999 * 109.47641 * 176.17562 * 6 5 4 33 33 H 1.09006 * 109.47133 * 296.17937 * 6 5 4 34 34 H 1.09004 * 109.47101 * 56.17203 * 6 5 4 35 35 H 1.08999 * 109.47564 * 303.78861 * 7 5 4 36 36 H 1.08997 * 109.47229 * 63.79365 * 7 5 4 37 37 H 1.09003 * 109.47251 * 183.79313 * 7 5 4 38 38 H 1.08990 * 110.03126 * 217.13687 * 8 5 4 39 39 H 1.09008 * 110.02646 * 95.75807 * 8 5 4 40 40 H 0.96997 * 120.00011 * 93.55174 * 11 9 8 41 41 H 1.07997 * 120.00748 * 0.02562 * 13 12 11 42 42 H 1.08001 * 119.99854 * 180.27948 * 14 13 12 43 43 H 0.96999 * 120.00573 * 179.97438 * 20 19 17 44 44 H 1.08003 * 119.99698 * 179.97438 * 25 15 14 45 45 H 1.08006 * 120.00234 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0720 -0.7818 -1.2223 5 6 3.4912 -1.1990 -0.7604 6 6 4.4731 -0.0385 -0.9332 7 6 3.9692 -2.4269 -1.5380 8 6 3.3166 -1.5405 0.7338 9 6 2.0699 -0.7789 1.2171 10 1 1.3177 -1.4823 1.5740 11 7 2.4345 0.1517 2.2883 12 6 2.4708 -0.2886 3.6144 13 6 2.1558 -1.6076 3.9174 14 6 2.1965 -2.0434 5.2263 15 6 2.5420 -1.1610 6.2418 16 8 2.5774 -1.5888 7.5301 17 6 3.0308 -0.7164 8.4525 18 1 3.2681 0.2975 8.1661 19 6 3.1924 -1.1208 9.7685 20 7 2.9036 -2.3562 10.1174 21 14 3.8200 0.0882 11.0468 22 1 2.6703 0.7953 11.6660 23 1 4.5724 -0.6463 12.0954 24 1 4.7164 1.0767 10.3951 25 6 2.8519 0.1589 5.9397 26 6 2.8161 0.5939 4.6305 27 1 -0.3633 0.4727 0.9126 28 1 -0.3633 0.5539 -0.8656 29 1 -0.3633 -1.0265 -0.0468 30 1 1.4579 -1.6600 -1.4224 31 1 2.1220 -0.1388 -2.1010 32 1 5.4486 -0.3263 -0.5414 33 1 4.5643 0.2058 -1.9917 34 1 4.1057 0.8322 -0.3899 35 1 3.2478 -3.2354 -1.4198 36 1 4.0622 -2.1745 -2.5943 37 1 4.9383 -2.7457 -1.1540 38 1 4.1928 -1.2172 1.2956 39 1 3.1696 -2.6136 0.8568 40 1 2.6505 1.0735 2.0772 41 1 1.8832 -2.2928 3.1284 42 1 1.9560 -3.0697 5.4615 43 1 3.0170 -2.6393 11.0382 44 1 3.1202 0.8449 6.7296 45 1 3.0575 1.6201 4.3956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235320057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:10 Heat of formation + Delta-G solvation = -20.639647 kcal Electronic energy + Delta-G solvation = -22878.260967 eV Core-core repulsion = 19667.354577 eV Total energy + Delta-G solvation = -3210.906390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.89943 -38.72321 -36.72026 -34.28066 -32.72955 -31.93229 -30.22940 -28.91485 -27.52651 -27.03940 -26.54230 -25.07680 -23.25585 -22.11135 -20.63793 -19.92717 -18.89488 -17.74874 -17.07462 -16.16478 -15.93879 -14.91657 -14.72636 -14.38394 -14.32000 -13.83305 -13.63659 -13.49843 -13.26831 -13.14355 -12.78748 -12.69565 -12.44103 -12.38753 -12.08312 -11.99619 -11.72276 -11.62119 -11.48103 -11.13590 -10.97116 -10.93184 -10.76126 -10.68750 -10.56049 -10.42839 -10.41269 -10.27211 -9.19914 -9.09804 -8.39249 -8.12338 -6.33998 -6.28887 -3.86442 2.24959 2.62573 3.20246 3.21006 3.25540 3.88417 4.08613 4.29670 4.44970 4.61369 4.73895 4.94494 5.06967 5.12172 5.23058 5.28069 5.32517 5.45072 5.46639 5.50678 5.52333 5.53366 5.63978 5.69988 5.76687 5.80390 5.84148 5.85704 5.89706 5.95706 6.01283 6.10687 6.14650 6.26630 6.27815 6.29453 6.39927 6.61628 6.91245 6.97563 7.19204 7.36234 7.50325 7.70038 8.06161 8.15321 8.31912 9.16691 9.92011 10.89534 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.003000 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.510145 B = 9332.266764 C = 9413.276970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.076 0.924 4 C -0.109 4.109 5 C -0.070 4.070 6 C -0.135 4.135 7 C -0.138 4.138 8 C -0.134 4.134 9 C 0.161 3.839 10 H 0.076 0.924 11 N -0.751 5.751 12 C 0.127 3.873 13 C -0.146 4.146 14 C -0.150 4.150 15 C 0.112 3.888 16 O -0.190 6.190 17 C -0.386 4.386 18 H 0.088 0.912 19 C 0.036 3.964 20 N -0.870 5.870 21 Si 0.937 3.063 22 H -0.275 1.275 23 H -0.279 1.279 24 H -0.269 1.269 25 C -0.190 4.190 26 C -0.144 4.144 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.388 0.612 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.267 0.733 44 H 0.126 0.874 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 4.264 -22.553 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.094 0.906 4 C -0.146 4.146 5 C -0.070 4.070 6 C -0.192 4.192 7 C -0.196 4.196 8 C -0.173 4.173 9 C 0.055 3.945 10 H 0.094 0.906 11 N -0.386 5.386 12 C 0.029 3.971 13 C -0.168 4.168 14 C -0.170 4.170 15 C 0.060 3.940 16 O -0.095 6.095 17 C -0.463 4.463 18 H 0.105 0.895 19 C -0.167 4.167 20 N -0.507 5.507 21 Si 0.762 3.238 22 H -0.201 1.201 23 H -0.204 1.204 24 H -0.194 1.194 25 C -0.210 4.210 26 C -0.166 4.166 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.222 0.778 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.077 0.923 44 H 0.144 0.856 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.641 3.744 -22.290 22.611 hybrid contribution 0.472 1.028 0.607 1.283 sum -0.170 4.771 -21.683 22.202 Atomic orbital electron populations 1.21789 0.94701 1.01872 1.01727 1.22189 0.95730 0.99459 0.94536 0.90583 1.22645 0.95368 0.99650 0.96976 1.21363 0.94917 0.95350 0.95394 1.21796 0.98657 0.97760 1.00966 1.21828 1.01172 0.97057 0.99503 1.22892 0.99600 1.00291 0.94495 1.21390 0.95124 0.91378 0.86627 0.90563 1.44385 1.79904 1.11687 1.02605 1.17397 1.02422 0.93351 0.83896 1.20188 1.06858 0.94186 0.95550 1.20029 1.07271 0.98982 0.90736 1.19231 0.96490 0.92046 0.86246 1.83985 1.73991 1.40517 1.10984 1.21228 1.44112 0.93182 0.87757 0.89504 1.25205 0.97402 0.96955 0.97145 1.70047 1.46046 1.16114 1.18461 0.85776 0.78829 0.79289 0.79875 1.20089 1.20427 1.19380 1.20982 1.07480 0.96405 0.96092 1.20224 1.06421 0.97973 0.92014 0.92329 0.92865 0.92577 0.91248 0.91675 0.92733 0.93083 0.92589 0.92612 0.92951 0.92703 0.90793 0.91717 0.77847 0.87198 0.86648 0.92345 0.85618 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.12 37.16 0.34 -0.92 16 2 C -0.10 -0.90 2.80 -88.96 -0.25 -1.15 16 3 H 0.08 0.68 7.25 -51.93 -0.38 0.31 16 4 C -0.11 -0.87 5.23 -24.70 -0.13 -1.00 16 5 C -0.07 -0.61 0.90 -152.81 -0.14 -0.75 16 6 C -0.13 -1.15 8.40 37.15 0.31 -0.83 16 7 C -0.14 -1.11 8.46 37.15 0.31 -0.79 16 8 C -0.13 -1.45 5.72 -25.61 -0.15 -1.60 16 9 C 0.16 1.82 2.47 -66.82 -0.17 1.65 16 10 H 0.08 0.95 6.20 -51.93 -0.32 0.63 16 11 N -0.75 -9.95 5.17 -51.04 -0.26 -10.22 16 12 C 0.13 2.20 6.66 -83.71 -0.56 1.64 16 13 C -0.15 -2.67 9.21 -39.40 -0.36 -3.03 16 14 C -0.15 -3.27 9.98 -39.42 -0.39 -3.66 16 15 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 16 O -0.19 -5.58 9.76 -0.04 0.00 -5.58 16 17 C -0.39 -11.12 9.48 30.87 0.29 -10.83 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 19 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 20 N -0.87 -26.30 13.67 55.48 0.76 -25.55 16 21 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.19 -4.23 9.16 -39.42 -0.36 -4.59 16 26 C -0.14 -2.69 9.89 -39.40 -0.39 -3.08 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.07 0.54 7.95 -51.93 -0.41 0.13 16 31 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.49 7.37 -51.93 -0.38 0.11 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.94 7.62 -51.93 -0.40 0.55 16 39 H 0.06 0.71 7.84 -51.92 -0.41 0.31 16 40 H 0.39 4.60 8.36 -40.82 -0.34 4.26 16 41 H 0.11 1.75 6.24 -52.49 -0.33 1.42 16 42 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.13 2.81 5.63 -52.48 -0.30 2.52 16 45 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -30.88 356.35 -8.46 -39.34 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.31 Total: 6.00 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -1.99 Total: -25.50 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.49 Total: -35.76 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.88 -8.46 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235320057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.702 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds