Wall clock time and date at job start Tue Mar 31 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.53826 * 2 1 4 4 C 1.54889 * 110.48401 * 237.39462 * 2 1 3 5 5 C 1.54968 * 102.77926 * 203.40430 * 4 2 1 6 6 C 1.52994 * 110.47667 * 279.23286 * 5 4 2 7 7 C 1.52993 * 110.53022 * 156.56267 * 5 4 2 8 8 C 1.54272 * 104.15655 * 37.88211 * 5 4 2 9 9 C 1.53872 * 106.64127 * 336.45210 * 8 5 4 10 10 H 1.08996 * 110.03410 * 119.26254 * 9 8 5 11 11 N 1.46504 * 110.02539 * 240.64057 * 9 8 5 12 12 C 1.39782 * 120.00147 * 273.54109 * 11 9 8 13 13 C 1.38952 * 120.00097 * 359.72894 * 12 11 9 14 14 C 1.38014 * 119.98879 * 179.76490 * 13 12 11 15 15 C 1.38896 * 120.00951 * 0.51053 * 14 13 12 16 16 O 1.35794 * 119.99705 * 179.76777 * 15 14 13 17 17 C 1.34813 * 117.00013 * 174.43298 * 16 15 14 18 18 H 1.07999 * 120.00134 * 5.05900 * 17 16 15 19 19 C 1.38620 * 120.00209 * 185.05102 * 17 16 15 20 20 N 1.31581 * 120.00039 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00449 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47217 * 90.00070 * 21 19 17 23 23 H 1.48497 * 109.47337 * 210.00612 * 21 19 17 24 24 H 1.48507 * 109.46713 * 330.00405 * 21 19 17 25 25 C 1.38904 * 120.01058 * 359.73990 * 15 14 13 26 26 C 1.38008 * 120.00270 * 0.02562 * 25 15 14 27 27 H 1.09005 * 109.46593 * 297.38346 * 1 2 3 28 28 H 1.08998 * 109.47184 * 57.38116 * 1 2 3 29 29 H 1.08990 * 109.47169 * 177.38687 * 1 2 3 30 30 H 1.09007 * 110.75316 * 321.68871 * 4 2 1 31 31 H 1.09001 * 110.75950 * 84.87769 * 4 2 1 32 32 H 1.08999 * 109.47641 * 176.17562 * 6 5 4 33 33 H 1.09006 * 109.47133 * 296.17937 * 6 5 4 34 34 H 1.09004 * 109.47101 * 56.17203 * 6 5 4 35 35 H 1.08999 * 109.47564 * 303.78861 * 7 5 4 36 36 H 1.08997 * 109.47229 * 63.79365 * 7 5 4 37 37 H 1.09003 * 109.47251 * 183.79313 * 7 5 4 38 38 H 1.08990 * 110.03126 * 217.13687 * 8 5 4 39 39 H 1.09008 * 110.02646 * 95.75807 * 8 5 4 40 40 H 0.96997 * 120.00011 * 93.55174 * 11 9 8 41 41 H 1.07997 * 120.00748 * 0.02562 * 13 12 11 42 42 H 1.08001 * 119.99854 * 180.27948 * 14 13 12 43 43 H 0.96999 * 120.00573 * 179.97438 * 20 19 17 44 44 H 1.08003 * 119.99698 * 179.97438 * 25 15 14 45 45 H 1.08006 * 120.00234 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0720 -0.7818 -1.2223 5 6 3.4912 -1.1990 -0.7604 6 6 4.4731 -0.0385 -0.9332 7 6 3.9692 -2.4269 -1.5380 8 6 3.3166 -1.5405 0.7338 9 6 2.0699 -0.7789 1.2171 10 1 1.3177 -1.4823 1.5740 11 7 2.4345 0.1517 2.2883 12 6 2.4708 -0.2886 3.6144 13 6 2.1558 -1.6076 3.9174 14 6 2.1965 -2.0434 5.2263 15 6 2.5420 -1.1610 6.2418 16 8 2.5774 -1.5888 7.5301 17 6 3.0308 -0.7164 8.4525 18 1 3.2681 0.2975 8.1661 19 6 3.1924 -1.1208 9.7685 20 7 2.9036 -2.3562 10.1174 21 14 3.8200 0.0882 11.0468 22 1 2.6703 0.7953 11.6660 23 1 4.5724 -0.6463 12.0954 24 1 4.7164 1.0767 10.3951 25 6 2.8519 0.1589 5.9397 26 6 2.8161 0.5939 4.6305 27 1 -0.3633 0.4727 0.9126 28 1 -0.3633 0.5539 -0.8656 29 1 -0.3633 -1.0265 -0.0468 30 1 1.4579 -1.6600 -1.4224 31 1 2.1220 -0.1388 -2.1010 32 1 5.4486 -0.3263 -0.5414 33 1 4.5643 0.2058 -1.9917 34 1 4.1057 0.8322 -0.3899 35 1 3.2478 -3.2354 -1.4198 36 1 4.0622 -2.1745 -2.5943 37 1 4.9383 -2.7457 -1.1540 38 1 4.1928 -1.2172 1.2956 39 1 3.1696 -2.6136 0.8568 40 1 2.6505 1.0735 2.0772 41 1 1.8832 -2.2928 3.1284 42 1 1.9560 -3.0697 5.4615 43 1 3.0170 -2.6393 11.0382 44 1 3.1202 0.8449 6.7296 45 1 3.0575 1.6201 4.3956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235320057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:09 Heat of formation + Delta-G solvation = -37.839969 kcal Electronic energy + Delta-G solvation = -22879.006829 eV Core-core repulsion = 19667.354577 eV Total energy + Delta-G solvation = -3211.652252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.99484 -40.24933 -38.35771 -35.47798 -34.17321 -33.47638 -31.84258 -30.05808 -28.45201 -28.13283 -27.40404 -26.94100 -24.34511 -23.62361 -22.20711 -20.90762 -19.65875 -19.58790 -18.84061 -17.60897 -17.11626 -16.26112 -15.94520 -15.78633 -15.38128 -15.29774 -15.10136 -14.88998 -14.36902 -14.15077 -14.03263 -13.93831 -13.67396 -13.43071 -13.32385 -13.22379 -13.02443 -12.74461 -12.64486 -12.42495 -12.26377 -12.10627 -12.06314 -11.89609 -11.60964 -11.39482 -11.23247 -11.12227 -11.07690 -10.85659 -10.11506 -9.76495 -8.38920 -7.89493 -6.02469 0.59615 0.95248 1.36440 1.46459 1.53995 2.22891 2.69772 2.92101 3.26000 3.53526 3.67963 3.72202 3.87322 4.13137 4.17781 4.23978 4.34732 4.40319 4.51355 4.55312 4.60537 4.67683 4.72254 4.77114 4.85027 4.89287 4.91551 5.00382 5.05319 5.11863 5.16309 5.16984 5.19125 5.20957 5.28848 5.30382 5.39577 5.46268 5.50470 5.56088 5.58359 5.61357 5.79842 6.02358 6.12142 6.68181 7.06059 7.09837 7.94383 8.85789 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.003000 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.510145 B = 9332.266764 C = 9413.276970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.083 0.917 4 C -0.102 4.102 5 C -0.066 4.066 6 C -0.134 4.134 7 C -0.138 4.138 8 C -0.133 4.133 9 C 0.155 3.845 10 H 0.069 0.931 11 N -0.736 5.736 12 C 0.158 3.842 13 C -0.145 4.145 14 C -0.156 4.156 15 C 0.061 3.939 16 O -0.243 6.243 17 C -0.406 4.406 18 H 0.098 0.902 19 C -0.029 4.029 20 N -0.928 5.928 21 Si 1.017 2.983 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.254 1.254 25 C -0.192 4.192 26 C -0.147 4.147 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.400 0.600 41 H 0.138 0.862 42 H 0.111 0.889 43 H 0.269 0.731 44 H 0.118 0.882 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 6.323 -25.703 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.140 4.140 5 C -0.067 4.067 6 C -0.191 4.191 7 C -0.195 4.195 8 C -0.172 4.172 9 C 0.049 3.951 10 H 0.087 0.913 11 N -0.369 5.369 12 C 0.057 3.943 13 C -0.168 4.168 14 C -0.175 4.175 15 C 0.011 3.989 16 O -0.152 6.152 17 C -0.483 4.483 18 H 0.115 0.885 19 C -0.225 4.225 20 N -0.567 5.567 21 Si 0.836 3.164 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.177 1.177 25 C -0.212 4.212 26 C -0.170 4.170 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.236 0.764 41 H 0.155 0.845 42 H 0.129 0.871 43 H 0.078 0.922 44 H 0.136 0.864 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.501 5.834 -25.545 26.208 hybrid contribution 0.383 0.404 1.179 1.303 sum -0.118 6.238 -24.367 25.153 Atomic orbital electron populations 1.21782 0.94321 1.02110 1.01772 1.22144 0.95910 0.99532 0.93570 0.89912 1.22626 0.94510 0.99958 0.96891 1.21341 0.95702 0.95835 0.93779 1.21792 0.98077 0.97439 1.01817 1.21822 1.00851 0.96739 1.00104 1.22842 0.98308 0.99971 0.96064 1.21610 0.95283 0.91357 0.86815 0.91327 1.44493 1.78301 1.12770 1.01353 1.17513 0.98772 0.92561 0.85500 1.20410 1.06363 0.95322 0.94664 1.20223 1.07016 0.98661 0.91646 1.19713 0.99664 0.93966 0.85520 1.83932 1.76530 1.41844 1.12860 1.21754 1.44206 0.93832 0.88473 0.88490 1.26529 0.97475 0.99176 0.99305 1.70205 1.48629 1.18731 1.19178 0.84614 0.78587 0.76728 0.76435 1.18913 1.19740 1.17744 1.21046 1.07277 0.95275 0.97622 1.20486 1.05988 0.99804 0.90691 0.93655 0.91326 0.92458 0.90755 0.90127 0.93578 0.91718 0.92749 0.92466 0.91692 0.93335 0.92687 0.92005 0.76401 0.84468 0.87135 0.92161 0.86432 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.12 71.98 0.66 -1.37 16 2 C -0.09 -1.34 2.80 -9.72 -0.03 -1.36 16 3 H 0.08 1.13 7.25 -2.39 -0.02 1.12 16 4 C -0.10 -1.25 5.23 31.91 0.17 -1.08 16 5 C -0.07 -0.96 0.90 -51.08 -0.05 -1.01 16 6 C -0.13 -1.88 8.40 71.98 0.60 -1.27 16 7 C -0.14 -1.84 8.46 71.98 0.61 -1.23 16 8 C -0.13 -2.58 5.72 31.32 0.18 -2.40 16 9 C 0.16 3.04 2.47 45.71 0.11 3.15 16 10 H 0.07 1.51 6.20 -2.39 -0.01 1.49 16 11 N -0.74 -17.21 5.17 -315.39 -1.63 -18.84 16 12 C 0.16 5.11 6.66 38.21 0.25 5.36 16 13 C -0.15 -5.18 9.21 22.39 0.21 -4.97 16 14 C -0.16 -6.97 9.98 22.37 0.22 -6.75 16 15 C 0.06 3.16 6.65 22.59 0.15 3.31 16 16 O -0.24 -15.28 9.76 -23.06 -0.22 -15.51 16 17 C -0.41 -24.56 9.48 67.91 0.64 -23.92 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 19 C -0.03 -1.70 5.49 84.82 0.47 -1.23 16 20 N -0.93 -58.99 13.67 21.61 0.30 -58.69 16 21 Si 1.02 44.44 29.55 68.60 2.03 46.47 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 25 C -0.19 -8.71 9.16 22.37 0.20 -8.50 16 26 C -0.15 -5.26 9.89 22.38 0.22 -5.04 16 27 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.80 8.12 -2.39 -0.02 0.79 16 30 H 0.07 0.88 7.95 -2.38 -0.02 0.86 16 31 H 0.08 0.81 8.06 -2.39 -0.02 0.79 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.05 0.77 7.37 -2.39 -0.02 0.75 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.05 1.29 7.62 -2.39 -0.02 1.27 16 39 H 0.06 1.24 7.84 -2.38 -0.02 1.22 16 40 H 0.40 7.93 8.36 -92.71 -0.77 7.15 16 41 H 0.14 4.11 6.24 -2.91 -0.02 4.09 16 42 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 43 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.12 5.40 5.63 -2.91 -0.02 5.39 16 45 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -71.64 356.35 5.29 -66.35 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.20 Total: 28.52 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 4.63 Total: -48.30 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -1.34 Total: -77.53 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.22 Total: -15.51 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -71.64 5.29 -66.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235320057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.510 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds