Wall clock time and date at job start Tue Mar 31 2020 06:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.81432 * 2 1 4 4 C 1.55032 * 110.88015 * 236.65346 * 2 1 3 5 5 C 1.54260 * 104.28136 * 203.89603 * 4 2 1 6 6 C 1.52997 * 110.03640 * 264.23026 * 5 4 2 7 7 C 1.53002 * 110.06977 * 142.82541 * 5 4 2 8 8 C 1.53874 * 106.59758 * 23.52177 * 5 4 2 9 9 C 1.54262 * 106.59980 * 359.97438 * 8 5 4 10 10 H 1.08998 * 110.48327 * 95.20403 * 9 8 5 11 11 N 1.46505 * 110.48602 * 217.71556 * 9 8 5 12 12 C 1.39671 * 120.00061 * 271.75798 * 11 9 8 13 13 C 1.39007 * 120.03684 * 0.02562 * 12 11 9 14 14 C 1.38151 * 120.06030 * 180.23175 * 13 12 11 15 15 C 1.38173 * 120.14313 * 359.49093 * 14 13 12 16 16 C 1.38915 * 120.07673 * 0.50918 * 15 14 13 17 17 O 1.35752 * 120.03428 * 179.76484 * 16 15 14 18 18 C 1.34828 * 117.00459 * 174.44057 * 17 16 15 19 19 H 1.08001 * 119.99655 * 5.05154 * 18 17 16 20 20 C 1.38646 * 120.00286 * 185.05813 * 18 17 16 21 21 N 1.31557 * 119.99954 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00064 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46972 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47224 * 120.00248 * 22 20 18 25 25 H 1.48506 * 109.46726 * 239.99961 * 22 20 18 26 26 C 1.38746 * 120.04052 * 179.97438 * 12 11 9 27 27 H 1.08995 * 109.47036 * 296.66651 * 1 2 3 28 28 H 1.09000 * 109.46836 * 56.66516 * 1 2 3 29 29 H 1.09003 * 109.46661 * 176.66411 * 1 2 3 30 30 H 1.09003 * 110.51945 * 85.15372 * 4 2 1 31 31 H 1.08998 * 110.36482 * 322.56650 * 4 2 1 32 32 H 1.08993 * 109.47224 * 178.61990 * 6 5 4 33 33 H 1.08999 * 109.47035 * 298.62692 * 6 5 4 34 34 H 1.09007 * 109.46990 * 58.62147 * 6 5 4 35 35 H 1.09001 * 109.46920 * 301.35298 * 7 5 4 36 36 H 1.08992 * 109.47345 * 61.35804 * 7 5 4 37 37 H 1.09005 * 109.47341 * 181.35898 * 7 5 4 38 38 H 1.09004 * 110.02818 * 240.70838 * 8 5 4 39 39 H 1.09000 * 110.07709 * 119.30608 * 8 5 4 40 40 H 0.97001 * 120.00136 * 91.76179 * 11 9 8 41 41 H 1.08001 * 119.97477 * 359.95496 * 13 12 11 42 42 H 1.08005 * 119.92983 * 179.74644 * 14 13 12 43 43 H 1.07998 * 119.96112 * 180.27318 * 15 14 13 44 44 H 0.96996 * 120.00071 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.07258 * 0.04194 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0826 -0.7962 -1.2100 5 6 3.4952 -1.2298 -0.7672 6 6 4.5360 -0.2376 -1.2899 7 6 3.8016 -2.6344 -1.2907 8 6 3.4929 -1.2296 0.7715 9 6 2.0791 -0.7954 1.2101 10 1 1.4560 -1.6678 1.4069 11 7 2.1507 0.0605 2.3970 12 6 2.1418 -0.5108 3.6715 13 6 2.0656 -1.8914 3.8146 14 6 2.0519 -2.4567 5.0751 15 6 2.1245 -1.6531 6.1968 16 6 2.2008 -0.2728 6.0605 17 8 2.2673 0.5162 7.1632 18 6 2.4554 1.8360 6.9613 19 1 2.4643 2.2326 5.9568 20 6 2.6377 2.6838 8.0431 21 7 2.6265 2.2006 9.2667 22 14 2.8991 4.5121 7.7632 23 1 2.8696 4.7990 6.3065 24 1 1.8206 5.2757 8.4406 25 1 4.2156 4.9148 8.3201 26 6 2.2101 0.2989 4.7961 27 1 -0.3633 0.4612 0.9183 28 1 -0.3633 0.5647 -0.8586 29 1 -0.3633 -1.0260 -0.0598 30 1 2.1382 -0.1596 -2.0931 31 1 1.4596 -1.6689 -1.4062 32 1 5.5273 -0.5389 -0.9515 33 1 4.5119 -0.2262 -2.3796 34 1 4.3101 0.7592 -0.9111 35 1 3.0561 -3.3338 -0.9123 36 1 3.7755 -2.6298 -2.3803 37 1 4.7915 -2.9405 -0.9523 38 1 4.2333 -0.5226 1.1459 39 1 3.7096 -2.2300 1.1461 40 1 2.2042 1.0239 2.2977 41 1 2.0125 -2.5225 2.9398 42 1 1.9885 -3.5294 5.1840 43 1 2.1180 -2.0984 7.1806 44 1 2.7543 2.7937 10.0235 45 1 2.2695 1.3718 4.6876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235321708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:12 Heat of formation + Delta-G solvation = -25.137417 kcal Electronic energy + Delta-G solvation = -23078.952121 eV Core-core repulsion = 19867.850693 eV Total energy + Delta-G solvation = -3211.101428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.85251 -38.74008 -36.69756 -34.53163 -32.81814 -32.10348 -29.79065 -28.49419 -27.54088 -27.46003 -26.57209 -25.21063 -23.28670 -21.81066 -20.74739 -19.90885 -18.89140 -17.82453 -17.22293 -16.01125 -15.44078 -15.07786 -14.77530 -14.24546 -14.20604 -14.02630 -13.71437 -13.56106 -13.42838 -13.32586 -12.93713 -12.75164 -12.55657 -12.28308 -12.01478 -11.91513 -11.66619 -11.58291 -11.35494 -11.14022 -10.96169 -10.74085 -10.69090 -10.64431 -10.54154 -10.46868 -10.40989 -10.29219 -9.32996 -9.29297 -8.71997 -7.29943 -6.69545 -6.37542 -3.96558 2.43805 2.62719 3.15966 3.17014 3.22164 3.81752 4.02500 4.33073 4.47013 4.61652 4.76677 4.95366 5.04421 5.15055 5.20213 5.29782 5.34841 5.42136 5.44486 5.46591 5.51690 5.55327 5.63892 5.73530 5.79767 5.81780 5.85639 5.90947 5.94845 6.01465 6.06711 6.13397 6.18146 6.29648 6.33161 6.34748 6.45032 6.71553 6.74424 7.10780 7.20596 7.44814 7.54757 7.74000 8.09288 8.10406 8.28678 9.08911 9.82399 10.81100 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.003738 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.866937 B = 7488.970171 C = 8130.287700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.077 0.923 4 C -0.108 4.108 5 C -0.069 4.069 6 C -0.137 4.137 7 C -0.139 4.139 8 C -0.132 4.132 9 C 0.159 3.841 10 H 0.082 0.918 11 N -0.746 5.746 12 C 0.252 3.748 13 C -0.279 4.279 14 C -0.041 4.041 15 C -0.238 4.238 16 C 0.190 3.810 17 O -0.180 6.180 18 C -0.387 4.387 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.939 3.061 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.303 4.303 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.393 0.607 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.268 0.732 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 -5.565 -21.154 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 H 0.095 0.905 4 C -0.146 4.146 5 C -0.070 4.070 6 C -0.195 4.195 7 C -0.196 4.196 8 C -0.171 4.171 9 C 0.053 3.947 10 H 0.100 0.900 11 N -0.376 5.376 12 C 0.150 3.850 13 C -0.302 4.302 14 C -0.059 4.059 15 C -0.259 4.259 16 C 0.135 3.865 17 O -0.083 6.083 18 C -0.464 4.464 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.501 5.501 22 Si 0.764 3.236 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.327 4.327 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.227 0.773 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.078 0.922 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.099 -5.669 -20.782 21.541 hybrid contribution 0.234 1.335 -0.192 1.369 sum 0.135 -4.335 -20.974 21.418 Atomic orbital electron populations 1.21741 0.94574 1.01840 1.01835 1.22339 0.95784 0.99436 0.94598 0.90460 1.22526 0.95240 0.99597 0.97233 1.21129 0.95112 0.95392 0.95354 1.21903 0.98388 0.98858 1.00309 1.21917 1.01515 0.95689 1.00476 1.22837 0.98433 1.02225 0.93652 1.21660 0.95176 0.93639 0.84256 0.89988 1.44594 1.83220 1.07686 1.02063 1.17466 0.91632 0.91891 0.83980 1.20086 1.20743 0.92491 0.96834 1.20373 0.96050 0.97859 0.91667 1.20026 1.16433 0.90890 0.98521 1.19070 0.90270 0.90649 0.86478 1.83985 1.77957 1.19142 1.27236 1.21341 1.50668 0.79765 0.94628 0.89179 1.25259 0.96798 1.00143 0.94396 1.70051 1.46357 1.35727 0.97950 0.85678 0.78250 0.80988 0.78661 1.19255 1.20228 1.20225 1.20506 1.21397 0.99689 0.91098 0.92184 0.92856 0.92637 0.91576 0.91303 0.92741 0.92975 0.92626 0.92559 0.92950 0.92719 0.91071 0.91503 0.77299 0.87883 0.87334 0.87019 0.92218 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.29 37.16 0.35 -1.02 16 2 C -0.10 -1.01 3.10 -88.56 -0.27 -1.28 16 3 H 0.08 0.77 8.02 -51.93 -0.42 0.36 16 4 C -0.11 -0.92 5.36 -25.00 -0.13 -1.05 16 5 C -0.07 -0.63 0.94 -153.39 -0.14 -0.77 16 6 C -0.14 -1.18 8.14 37.16 0.30 -0.88 16 7 C -0.14 -1.13 8.16 37.16 0.30 -0.83 16 8 C -0.13 -1.50 5.85 -25.62 -0.15 -1.65 16 9 C 0.16 1.91 2.31 -66.28 -0.15 1.76 16 10 H 0.08 1.05 6.41 -51.93 -0.33 0.72 16 11 N -0.75 -11.12 5.28 -50.60 -0.27 -11.38 16 12 C 0.25 4.75 6.65 -83.81 -0.56 4.19 16 13 C -0.28 -5.04 9.22 -39.33 -0.36 -5.40 16 14 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 15 C -0.24 -5.29 9.99 -39.35 -0.39 -5.68 16 16 C 0.19 4.76 6.65 -39.13 -0.26 4.50 16 17 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 18 C -0.39 -11.09 9.49 30.88 0.29 -10.80 16 19 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 21 N -0.87 -25.89 13.67 55.48 0.76 -25.13 16 22 Si 0.94 20.94 29.55 -169.99 -5.02 15.91 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C -0.30 -6.80 9.01 -39.20 -0.35 -7.15 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.07 0.51 7.84 -51.93 -0.41 0.11 16 31 H 0.07 0.56 7.72 -51.93 -0.40 0.16 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.91 7.57 -51.93 -0.39 0.51 16 39 H 0.07 0.79 7.67 -51.93 -0.40 0.39 16 40 H 0.39 5.56 8.56 -40.82 -0.35 5.21 16 41 H 0.10 1.62 6.24 -52.49 -0.33 1.30 16 42 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 43 H 0.11 2.42 8.06 -52.49 -0.42 1.99 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.12 2.78 5.64 -52.49 -0.30 2.49 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -30.73 357.76 -8.55 -39.27 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.38 Total: 7.50 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -2.03 Total: -26.27 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.49 Total: -36.51 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.73 -8.55 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235321708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.137 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds