Wall clock time and date at job start Tue Mar 31 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.81432 * 2 1 4 4 C 1.55032 * 110.88015 * 236.65346 * 2 1 3 5 5 C 1.54260 * 104.28136 * 203.89603 * 4 2 1 6 6 C 1.52997 * 110.03640 * 264.23026 * 5 4 2 7 7 C 1.53002 * 110.06977 * 142.82541 * 5 4 2 8 8 C 1.53874 * 106.59758 * 23.52177 * 5 4 2 9 9 C 1.54262 * 106.59980 * 359.97438 * 8 5 4 10 10 H 1.08998 * 110.48327 * 95.20403 * 9 8 5 11 11 N 1.46505 * 110.48602 * 217.71556 * 9 8 5 12 12 C 1.39671 * 120.00061 * 271.75798 * 11 9 8 13 13 C 1.39007 * 120.03684 * 0.02562 * 12 11 9 14 14 C 1.38151 * 120.06030 * 180.23175 * 13 12 11 15 15 C 1.38173 * 120.14313 * 359.49093 * 14 13 12 16 16 C 1.38915 * 120.07673 * 0.50918 * 15 14 13 17 17 O 1.35752 * 120.03428 * 179.76484 * 16 15 14 18 18 C 1.34828 * 117.00459 * 174.44057 * 17 16 15 19 19 H 1.08001 * 119.99655 * 5.05154 * 18 17 16 20 20 C 1.38646 * 120.00286 * 185.05813 * 18 17 16 21 21 N 1.31557 * 119.99954 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00064 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46972 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47224 * 120.00248 * 22 20 18 25 25 H 1.48506 * 109.46726 * 239.99961 * 22 20 18 26 26 C 1.38746 * 120.04052 * 179.97438 * 12 11 9 27 27 H 1.08995 * 109.47036 * 296.66651 * 1 2 3 28 28 H 1.09000 * 109.46836 * 56.66516 * 1 2 3 29 29 H 1.09003 * 109.46661 * 176.66411 * 1 2 3 30 30 H 1.09003 * 110.51945 * 85.15372 * 4 2 1 31 31 H 1.08998 * 110.36482 * 322.56650 * 4 2 1 32 32 H 1.08993 * 109.47224 * 178.61990 * 6 5 4 33 33 H 1.08999 * 109.47035 * 298.62692 * 6 5 4 34 34 H 1.09007 * 109.46990 * 58.62147 * 6 5 4 35 35 H 1.09001 * 109.46920 * 301.35298 * 7 5 4 36 36 H 1.08992 * 109.47345 * 61.35804 * 7 5 4 37 37 H 1.09005 * 109.47341 * 181.35898 * 7 5 4 38 38 H 1.09004 * 110.02818 * 240.70838 * 8 5 4 39 39 H 1.09000 * 110.07709 * 119.30608 * 8 5 4 40 40 H 0.97001 * 120.00136 * 91.76179 * 11 9 8 41 41 H 1.08001 * 119.97477 * 359.95496 * 13 12 11 42 42 H 1.08005 * 119.92983 * 179.74644 * 14 13 12 43 43 H 1.07998 * 119.96112 * 180.27318 * 15 14 13 44 44 H 0.96996 * 120.00071 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.07258 * 0.04194 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0826 -0.7962 -1.2100 5 6 3.4952 -1.2298 -0.7672 6 6 4.5360 -0.2376 -1.2899 7 6 3.8016 -2.6344 -1.2907 8 6 3.4929 -1.2296 0.7715 9 6 2.0791 -0.7954 1.2101 10 1 1.4560 -1.6678 1.4069 11 7 2.1507 0.0605 2.3970 12 6 2.1418 -0.5108 3.6715 13 6 2.0656 -1.8914 3.8146 14 6 2.0519 -2.4567 5.0751 15 6 2.1245 -1.6531 6.1968 16 6 2.2008 -0.2728 6.0605 17 8 2.2673 0.5162 7.1632 18 6 2.4554 1.8360 6.9613 19 1 2.4643 2.2326 5.9568 20 6 2.6377 2.6838 8.0431 21 7 2.6265 2.2006 9.2667 22 14 2.8991 4.5121 7.7632 23 1 2.8696 4.7990 6.3065 24 1 1.8206 5.2757 8.4406 25 1 4.2156 4.9148 8.3201 26 6 2.2101 0.2989 4.7961 27 1 -0.3633 0.4612 0.9183 28 1 -0.3633 0.5647 -0.8586 29 1 -0.3633 -1.0260 -0.0598 30 1 2.1382 -0.1596 -2.0931 31 1 1.4596 -1.6689 -1.4062 32 1 5.5273 -0.5389 -0.9515 33 1 4.5119 -0.2262 -2.3796 34 1 4.3101 0.7592 -0.9111 35 1 3.0561 -3.3338 -0.9123 36 1 3.7755 -2.6298 -2.3803 37 1 4.7915 -2.9405 -0.9523 38 1 4.2333 -0.5226 1.1459 39 1 3.7096 -2.2300 1.1461 40 1 2.2042 1.0239 2.2977 41 1 2.0125 -2.5225 2.9398 42 1 1.9885 -3.5294 5.1840 43 1 2.1180 -2.0984 7.1806 44 1 2.7543 2.7937 10.0235 45 1 2.2695 1.3718 4.6876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235321708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:11 Heat of formation + Delta-G solvation = -42.208724 kcal Electronic energy + Delta-G solvation = -23079.692388 eV Core-core repulsion = 19867.850693 eV Total energy + Delta-G solvation = -3211.841695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01160 -40.26655 -38.35777 -35.78236 -34.25210 -33.69525 -31.15494 -30.07111 -28.75238 -28.14184 -27.35833 -27.22847 -24.30527 -23.46538 -22.17457 -21.06055 -19.69387 -19.63815 -18.93606 -17.20542 -16.93344 -16.64225 -16.08347 -15.66174 -15.60954 -15.44794 -15.00892 -14.66705 -14.48753 -14.33736 -14.28902 -14.06479 -13.62063 -13.48978 -13.37224 -13.27579 -12.77744 -12.62678 -12.50268 -12.38474 -12.20718 -12.14118 -12.06156 -11.93950 -11.59023 -11.36393 -11.35187 -11.22208 -11.19537 -10.88097 -10.54450 -9.09753 -8.45428 -8.19614 -6.13677 0.77402 0.93293 1.33579 1.43307 1.52076 2.18153 2.56833 2.89517 3.26893 3.51791 3.60676 3.70477 3.83762 4.16487 4.24026 4.28865 4.34244 4.42349 4.50487 4.55232 4.61108 4.64609 4.73465 4.75403 4.84213 4.88485 4.91418 4.99525 5.03969 5.10496 5.13519 5.15383 5.16982 5.17541 5.23397 5.29637 5.40536 5.45277 5.50248 5.52783 5.60061 5.76568 5.81638 6.06116 6.13648 6.65080 6.89409 7.00160 7.83812 8.78573 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.003738 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.866937 B = 7488.970171 C = 8130.287700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.076 0.924 4 C -0.101 4.101 5 C -0.065 4.065 6 C -0.137 4.137 7 C -0.137 4.137 8 C -0.130 4.130 9 C 0.153 3.847 10 H 0.083 0.917 11 N -0.735 5.735 12 C 0.260 3.740 13 C -0.264 4.264 14 C -0.026 4.026 15 C -0.263 4.263 16 C 0.153 3.847 17 O -0.233 6.233 18 C -0.410 4.410 19 H 0.098 0.902 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.018 2.982 23 H -0.253 1.253 24 H -0.267 1.267 25 H -0.268 1.268 26 C -0.318 4.318 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.397 0.603 41 H 0.139 0.861 42 H 0.151 0.849 43 H 0.105 0.895 44 H 0.272 0.728 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 -6.179 -25.067 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.139 4.139 5 C -0.066 4.066 6 C -0.195 4.195 7 C -0.195 4.195 8 C -0.169 4.169 9 C 0.048 3.952 10 H 0.101 0.899 11 N -0.364 5.364 12 C 0.156 3.844 13 C -0.286 4.286 14 C -0.045 4.045 15 C -0.284 4.284 16 C 0.102 3.898 17 O -0.140 6.140 18 C -0.486 4.486 19 H 0.116 0.884 20 C -0.221 4.221 21 N -0.561 5.561 22 Si 0.838 3.162 23 H -0.177 1.177 24 H -0.192 1.192 25 H -0.193 1.193 26 C -0.342 4.342 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.231 0.769 41 H 0.156 0.844 42 H 0.168 0.832 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.250 -6.313 -24.782 25.574 hybrid contribution 0.258 1.295 0.761 1.524 sum 0.008 -5.018 -24.020 24.539 Atomic orbital electron populations 1.21728 0.94216 1.02306 1.01559 1.22309 0.95977 0.99280 0.94034 0.90594 1.22512 0.94624 0.99928 0.96832 1.21098 0.95732 0.96266 0.93467 1.21902 0.98003 0.98333 1.01214 1.21904 1.01404 0.94862 1.01303 1.22793 0.97135 1.01394 0.95603 1.21927 0.95996 0.93585 0.83698 0.89941 1.44758 1.81573 1.08428 1.01593 1.17542 0.90073 0.92218 0.84570 1.20534 1.17917 0.92340 0.97844 1.20816 0.93469 0.99616 0.90578 1.20245 1.18148 0.90236 0.99798 1.19634 0.91796 0.91641 0.86721 1.83945 1.80701 1.19756 1.29557 1.21821 1.51145 0.80236 0.95415 0.88438 1.26577 0.96112 1.05638 0.93787 1.70196 1.48797 1.37946 0.99154 0.84537 0.78516 0.73779 0.79384 1.17653 1.19222 1.19300 1.20506 1.22550 0.99585 0.91544 0.94050 0.91370 0.92027 0.90229 0.90311 0.93229 0.91530 0.93269 0.92311 0.91663 0.93060 0.92794 0.91801 0.76886 0.84368 0.83155 0.87647 0.91901 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.29 71.98 0.67 -1.63 16 2 C -0.10 -1.62 3.10 -9.46 -0.03 -1.65 16 3 H 0.08 1.32 8.02 -2.39 -0.02 1.30 16 4 C -0.10 -1.33 5.36 31.72 0.17 -1.16 16 5 C -0.07 -0.97 0.94 -51.46 -0.05 -1.02 16 6 C -0.14 -2.00 8.14 71.98 0.59 -1.42 16 7 C -0.14 -1.77 8.16 71.98 0.59 -1.18 16 8 C -0.13 -2.62 5.85 31.32 0.18 -2.43 16 9 C 0.15 3.26 2.31 46.06 0.11 3.36 16 10 H 0.08 1.80 6.41 -2.39 -0.02 1.78 16 11 N -0.74 -20.76 5.28 -313.99 -1.66 -22.41 16 12 C 0.26 9.54 6.65 38.20 0.25 9.79 16 13 C -0.26 -8.81 9.22 22.43 0.21 -8.60 16 14 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16 15 C -0.26 -11.98 9.99 22.42 0.22 -11.76 16 16 C 0.15 8.08 6.65 22.56 0.15 8.23 16 17 O -0.23 -14.67 9.76 -22.75 -0.22 -14.89 16 18 C -0.41 -24.78 9.49 67.92 0.64 -24.13 16 19 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 20 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 21 N -0.92 -58.11 13.67 21.61 0.30 -57.81 16 22 Si 1.02 44.09 29.55 68.60 2.03 46.12 16 23 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 C -0.32 -14.66 9.01 22.52 0.20 -14.46 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 30 H 0.08 0.89 7.84 -2.39 -0.02 0.88 16 31 H 0.08 0.93 7.72 -2.39 -0.02 0.91 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.05 1.28 7.57 -2.38 -0.02 1.26 16 39 H 0.06 1.32 7.67 -2.39 -0.02 1.30 16 40 H 0.40 10.81 8.56 -92.71 -0.79 10.02 16 41 H 0.14 3.71 6.24 -2.91 -0.02 3.69 16 42 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 43 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 44 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.11 5.27 5.64 -2.91 -0.02 5.26 16 Total: -1.00 -71.61 357.76 5.21 -66.40 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.18 Total: 32.32 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 4.59 Total: -49.72 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -1.36 Total: -80.23 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.22 Total: -14.89 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -71.61 5.21 -66.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235321708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.189 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds