Wall clock time and date at job start Tue Mar 31 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.53945 * 2 1 4 4 C 1.54891 * 110.48441 * 122.61422 * 2 1 3 5 5 C 1.54890 * 102.74851 * 156.61956 * 4 2 1 6 6 C 1.52997 * 110.48904 * 203.37902 * 5 4 2 7 7 C 1.52997 * 110.48689 * 80.73403 * 5 4 2 8 8 C 1.54271 * 104.19419 * 322.05883 * 5 4 2 9 9 C 1.53871 * 106.59984 * 23.60513 * 8 5 4 10 10 H 1.08995 * 110.03379 * 240.66812 * 9 8 5 11 11 N 1.46497 * 110.02869 * 119.28573 * 9 8 5 12 12 C 1.39784 * 120.00271 * 86.45806 * 11 9 8 13 13 C 1.38943 * 120.00943 * 179.97438 * 12 11 9 14 14 C 1.38014 * 119.99201 * 180.23154 * 13 12 11 15 15 C 1.38893 * 120.00778 * 359.49313 * 14 13 12 16 16 O 1.35796 * 119.99965 * 180.23531 * 15 14 13 17 17 C 1.34809 * 117.00833 * 174.73324 * 16 15 14 18 18 H 1.08003 * 119.99228 * 5.05017 * 17 16 15 19 19 C 1.38614 * 120.00609 * 185.05631 * 17 16 15 20 20 N 1.31589 * 119.99588 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00471 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47144 * 60.00065 * 21 19 17 23 23 H 1.48499 * 109.47363 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47380 * 300.00409 * 21 19 17 25 25 C 1.38900 * 120.00882 * 0.50727 * 15 14 13 26 26 C 1.38006 * 120.00952 * 359.74664 * 25 15 14 27 27 H 1.08999 * 109.47426 * 182.61709 * 1 2 3 28 28 H 1.09002 * 109.46836 * 302.61231 * 1 2 3 29 29 H 1.08992 * 109.47055 * 62.60978 * 1 2 3 30 30 H 1.09002 * 110.76048 * 38.30481 * 4 2 1 31 31 H 1.09006 * 110.91650 * 275.00337 * 4 2 1 32 32 H 1.08998 * 109.47540 * 176.22999 * 6 5 4 33 33 H 1.09000 * 109.47109 * 296.22783 * 6 5 4 34 34 H 1.09002 * 109.47242 * 56.22943 * 6 5 4 35 35 H 1.09004 * 109.47448 * 303.77218 * 7 5 4 36 36 H 1.08997 * 109.46986 * 63.77141 * 7 5 4 37 37 H 1.08996 * 109.47497 * 183.77469 * 7 5 4 38 38 H 1.09001 * 110.02523 * 264.32316 * 8 5 4 39 39 H 1.08994 * 110.03353 * 142.89627 * 8 5 4 40 40 H 0.97000 * 120.00235 * 266.45406 * 11 9 8 41 41 H 1.08000 * 120.00621 * 359.95602 * 13 12 11 42 42 H 1.08008 * 119.99318 * 179.72823 * 14 13 12 43 43 H 0.97008 * 119.99498 * 180.02562 * 20 19 17 44 44 H 1.08001 * 119.99597 * 179.73159 * 25 15 14 45 45 H 1.07997 * 120.00419 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7820 1.2222 5 6 3.4907 -1.1980 0.7600 6 6 3.9692 -2.4252 1.5384 7 6 4.4720 -0.0369 0.9323 8 6 3.3165 -1.5405 -0.7341 9 6 2.0699 -0.7789 -1.2172 10 1 1.3179 -1.4822 -1.5749 11 7 2.4345 0.1526 -2.2875 12 6 2.4715 -0.2867 -3.6140 13 6 2.8167 0.5968 -4.6292 14 6 2.8485 0.1639 -5.9394 15 6 2.5456 -1.1574 -6.2419 16 8 2.5815 -1.5843 -7.5305 17 6 2.3845 -2.9005 -7.7450 18 1 2.1275 -3.5494 -6.9207 19 6 2.5118 -3.4212 -9.0233 20 7 2.8246 -2.6305 -10.0276 21 14 2.2395 -5.2451 -9.3204 22 1 0.8569 -5.6109 -8.9203 23 1 2.4331 -5.5463 -10.7616 24 1 3.2112 -6.0283 -8.5156 25 6 2.2004 -2.0408 -5.2271 26 6 2.1634 -1.6072 -3.9175 27 1 -0.3634 -1.0266 0.0469 28 1 -0.3633 0.5539 0.8657 29 1 -0.3633 0.4727 -0.9124 30 1 1.4580 -1.6601 1.4223 31 1 2.1251 -0.1409 2.1021 32 1 4.9384 -2.7437 1.1548 33 1 4.0618 -2.1721 2.5946 34 1 3.2481 -3.2341 1.4206 35 1 4.1045 0.8332 0.3882 36 1 4.5628 0.2080 1.9905 37 1 5.4477 -0.3246 0.5408 38 1 3.1692 -2.6136 -0.8563 39 1 4.1927 -1.2172 -1.2959 40 1 2.6502 1.0743 -2.0757 41 1 3.0559 1.6234 -4.3937 42 1 3.1126 0.8518 -6.7290 43 1 2.9134 -2.9949 -10.9222 44 1 1.9607 -3.0671 -5.4631 45 1 1.8945 -2.2941 -3.1286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235547368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:14 Heat of formation + Delta-G solvation = -20.555384 kcal Electronic energy + Delta-G solvation = -22948.461662 eV Core-core repulsion = 19737.558926 eV Total energy + Delta-G solvation = -3210.902736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.90118 -38.72106 -36.71733 -34.28917 -32.72691 -31.92588 -30.17144 -29.00329 -27.52120 -27.03120 -26.47885 -25.08254 -23.35411 -22.03409 -20.61966 -19.88663 -18.88452 -17.87398 -17.12565 -16.17848 -15.70651 -14.97370 -14.66870 -14.39202 -14.31702 -13.98182 -13.56458 -13.45682 -13.30278 -13.10527 -12.91278 -12.68110 -12.41694 -12.40364 -12.08343 -11.98263 -11.68516 -11.53441 -11.47644 -11.14616 -11.00414 -10.91348 -10.75751 -10.68247 -10.55679 -10.42241 -10.41354 -10.32215 -9.17633 -9.10299 -8.39160 -8.12312 -6.33689 -6.28828 -3.86270 2.25064 2.62808 3.20546 3.21783 3.24227 3.88625 4.08824 4.30043 4.45422 4.61714 4.74026 4.94799 5.07308 5.12697 5.23223 5.28507 5.34134 5.45679 5.47343 5.48481 5.51650 5.52794 5.64204 5.72641 5.78352 5.81040 5.83154 5.85394 5.89930 5.96246 6.01982 6.11109 6.15280 6.26244 6.29476 6.30991 6.39510 6.59146 6.88292 7.03688 7.15930 7.37802 7.51462 7.68253 8.06879 8.15167 8.32383 9.16787 9.92066 10.89652 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022939 B = 0.003301 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.337494 B = 8479.206595 C = 8895.264133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.076 0.924 4 C -0.109 4.109 5 C -0.070 4.070 6 C -0.138 4.138 7 C -0.134 4.134 8 C -0.133 4.133 9 C 0.162 3.838 10 H 0.076 0.924 11 N -0.751 5.751 12 C 0.127 3.873 13 C -0.146 4.146 14 C -0.149 4.149 15 C 0.112 3.888 16 O -0.189 6.189 17 C -0.386 4.386 18 H 0.087 0.913 19 C 0.036 3.964 20 N -0.870 5.870 21 Si 0.937 3.063 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.272 1.272 25 C -0.191 4.191 26 C -0.144 4.144 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.388 0.612 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.267 0.733 44 H 0.125 0.875 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 3.704 22.711 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.094 0.906 4 C -0.147 4.147 5 C -0.070 4.070 6 C -0.196 4.196 7 C -0.192 4.192 8 C -0.173 4.173 9 C 0.055 3.945 10 H 0.094 0.906 11 N -0.386 5.386 12 C 0.029 3.971 13 C -0.168 4.168 14 C -0.169 4.169 15 C 0.060 3.940 16 O -0.095 6.095 17 C -0.463 4.463 18 H 0.104 0.896 19 C -0.167 4.167 20 N -0.507 5.507 21 Si 0.762 3.238 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.197 1.197 25 C -0.211 4.211 26 C -0.166 4.166 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.222 0.778 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.077 0.923 44 H 0.143 0.857 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.692 3.626 22.299 22.602 hybrid contribution -0.025 -0.674 -0.051 0.677 sum -0.717 2.952 22.247 22.454 Atomic orbital electron populations 1.21790 0.94708 1.01873 1.01720 1.22186 0.95724 0.99445 0.94516 0.90565 1.22634 0.95374 0.99671 0.96979 1.21355 0.94936 0.95355 0.95394 1.21832 1.01175 0.97076 0.99496 1.21794 0.98656 0.97746 1.00964 1.22889 0.99594 1.00288 0.94492 1.21388 0.95129 0.91362 0.86631 0.90594 1.44379 1.79914 1.11668 1.02613 1.17399 1.02494 0.93310 0.83901 1.20109 1.07026 0.98081 0.91575 1.19997 1.07001 0.94259 0.95658 1.19229 0.96266 0.92946 0.85581 1.83981 1.79899 1.26308 1.19266 1.21178 1.48571 0.81560 0.95000 0.89566 1.25202 0.97048 0.99900 0.94540 1.70047 1.45393 1.35243 1.00002 0.85848 0.78995 0.81163 0.77776 1.19700 1.20434 1.19695 1.21002 1.07252 1.00655 0.92174 1.20299 1.06304 0.93997 0.95994 0.92594 0.92861 0.92328 0.91253 0.91663 0.92706 0.92948 0.92622 0.92580 0.93082 0.92734 0.91748 0.90792 0.77846 0.87324 0.86587 0.92296 0.85689 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.12 37.16 0.34 -0.93 16 2 C -0.10 -0.91 2.80 -88.96 -0.25 -1.16 16 3 H 0.08 0.68 7.25 -51.93 -0.38 0.31 16 4 C -0.11 -0.89 5.23 -24.74 -0.13 -1.02 16 5 C -0.07 -0.62 0.90 -152.85 -0.14 -0.76 16 6 C -0.14 -1.13 8.46 37.16 0.31 -0.82 16 7 C -0.13 -1.15 8.39 37.16 0.31 -0.84 16 8 C -0.13 -1.48 5.73 -25.61 -0.15 -1.63 16 9 C 0.16 1.85 2.46 -66.82 -0.16 1.68 16 10 H 0.08 0.97 6.21 -51.93 -0.32 0.65 16 11 N -0.75 -9.95 5.17 -51.04 -0.26 -10.21 16 12 C 0.13 2.19 6.66 -83.71 -0.56 1.63 16 13 C -0.15 -2.65 9.89 -39.40 -0.39 -3.04 16 14 C -0.15 -3.23 9.98 -39.42 -0.39 -3.63 16 15 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 16 O -0.19 -5.58 9.75 -0.04 0.00 -5.58 16 17 C -0.39 -11.13 9.48 30.87 0.29 -10.84 16 18 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 19 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 20 N -0.87 -26.32 13.67 55.48 0.76 -25.56 16 21 Si 0.94 21.16 29.55 -169.99 -5.02 16.13 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 C -0.19 -4.26 9.16 -39.42 -0.36 -4.62 16 26 C -0.14 -2.71 9.21 -39.40 -0.36 -3.07 16 27 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.56 7.95 -51.93 -0.41 0.14 16 31 H 0.06 0.48 8.05 -51.93 -0.42 0.07 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.49 7.36 -51.93 -0.38 0.11 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.73 7.84 -51.93 -0.41 0.33 16 39 H 0.07 0.95 7.63 -51.93 -0.40 0.56 16 40 H 0.39 4.53 8.35 -40.82 -0.34 4.19 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.12 2.43 8.06 -52.48 -0.42 2.00 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.13 2.81 5.63 -52.49 -0.30 2.51 16 45 H 0.11 1.76 6.25 -52.49 -0.33 1.43 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -30.88 356.33 -8.46 -39.34 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.31 Total: 6.10 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -1.99 Total: -25.59 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.49 Total: -35.77 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.88 -8.46 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235547368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.785 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds