Wall clock time and date at job start Tue Mar 31 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.53945 * 2 1 4 4 C 1.54891 * 110.48441 * 122.61422 * 2 1 3 5 5 C 1.54890 * 102.74851 * 156.61956 * 4 2 1 6 6 C 1.52997 * 110.48904 * 203.37902 * 5 4 2 7 7 C 1.52997 * 110.48689 * 80.73403 * 5 4 2 8 8 C 1.54271 * 104.19419 * 322.05883 * 5 4 2 9 9 C 1.53871 * 106.59984 * 23.60513 * 8 5 4 10 10 H 1.08995 * 110.03379 * 240.66812 * 9 8 5 11 11 N 1.46497 * 110.02869 * 119.28573 * 9 8 5 12 12 C 1.39784 * 120.00271 * 86.45806 * 11 9 8 13 13 C 1.38943 * 120.00943 * 179.97438 * 12 11 9 14 14 C 1.38014 * 119.99201 * 180.23154 * 13 12 11 15 15 C 1.38893 * 120.00778 * 359.49313 * 14 13 12 16 16 O 1.35796 * 119.99965 * 180.23531 * 15 14 13 17 17 C 1.34809 * 117.00833 * 174.73324 * 16 15 14 18 18 H 1.08003 * 119.99228 * 5.05017 * 17 16 15 19 19 C 1.38614 * 120.00609 * 185.05631 * 17 16 15 20 20 N 1.31589 * 119.99588 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00471 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47144 * 60.00065 * 21 19 17 23 23 H 1.48499 * 109.47363 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47380 * 300.00409 * 21 19 17 25 25 C 1.38900 * 120.00882 * 0.50727 * 15 14 13 26 26 C 1.38006 * 120.00952 * 359.74664 * 25 15 14 27 27 H 1.08999 * 109.47426 * 182.61709 * 1 2 3 28 28 H 1.09002 * 109.46836 * 302.61231 * 1 2 3 29 29 H 1.08992 * 109.47055 * 62.60978 * 1 2 3 30 30 H 1.09002 * 110.76048 * 38.30481 * 4 2 1 31 31 H 1.09006 * 110.91650 * 275.00337 * 4 2 1 32 32 H 1.08998 * 109.47540 * 176.22999 * 6 5 4 33 33 H 1.09000 * 109.47109 * 296.22783 * 6 5 4 34 34 H 1.09002 * 109.47242 * 56.22943 * 6 5 4 35 35 H 1.09004 * 109.47448 * 303.77218 * 7 5 4 36 36 H 1.08997 * 109.46986 * 63.77141 * 7 5 4 37 37 H 1.08996 * 109.47497 * 183.77469 * 7 5 4 38 38 H 1.09001 * 110.02523 * 264.32316 * 8 5 4 39 39 H 1.08994 * 110.03353 * 142.89627 * 8 5 4 40 40 H 0.97000 * 120.00235 * 266.45406 * 11 9 8 41 41 H 1.08000 * 120.00621 * 359.95602 * 13 12 11 42 42 H 1.08008 * 119.99318 * 179.72823 * 14 13 12 43 43 H 0.97008 * 119.99498 * 180.02562 * 20 19 17 44 44 H 1.08001 * 119.99597 * 179.73159 * 25 15 14 45 45 H 1.07997 * 120.00419 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7820 1.2222 5 6 3.4907 -1.1980 0.7600 6 6 3.9692 -2.4252 1.5384 7 6 4.4720 -0.0369 0.9323 8 6 3.3165 -1.5405 -0.7341 9 6 2.0699 -0.7789 -1.2172 10 1 1.3179 -1.4822 -1.5749 11 7 2.4345 0.1526 -2.2875 12 6 2.4715 -0.2867 -3.6140 13 6 2.8167 0.5968 -4.6292 14 6 2.8485 0.1639 -5.9394 15 6 2.5456 -1.1574 -6.2419 16 8 2.5815 -1.5843 -7.5305 17 6 2.3845 -2.9005 -7.7450 18 1 2.1275 -3.5494 -6.9207 19 6 2.5118 -3.4212 -9.0233 20 7 2.8246 -2.6305 -10.0276 21 14 2.2395 -5.2451 -9.3204 22 1 0.8569 -5.6109 -8.9203 23 1 2.4331 -5.5463 -10.7616 24 1 3.2112 -6.0283 -8.5156 25 6 2.2004 -2.0408 -5.2271 26 6 2.1634 -1.6072 -3.9175 27 1 -0.3634 -1.0266 0.0469 28 1 -0.3633 0.5539 0.8657 29 1 -0.3633 0.4727 -0.9124 30 1 1.4580 -1.6601 1.4223 31 1 2.1251 -0.1409 2.1021 32 1 4.9384 -2.7437 1.1548 33 1 4.0618 -2.1721 2.5946 34 1 3.2481 -3.2341 1.4206 35 1 4.1045 0.8332 0.3882 36 1 4.5628 0.2080 1.9905 37 1 5.4477 -0.3246 0.5408 38 1 3.1692 -2.6136 -0.8563 39 1 4.1927 -1.2172 -1.2959 40 1 2.6502 1.0743 -2.0757 41 1 3.0559 1.6234 -4.3937 42 1 3.1126 0.8518 -6.7290 43 1 2.9134 -2.9949 -10.9222 44 1 1.9607 -3.0671 -5.4631 45 1 1.8945 -2.2941 -3.1286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235547368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:13 Heat of formation + Delta-G solvation = -37.785084 kcal Electronic energy + Delta-G solvation = -22949.208797 eV Core-core repulsion = 19737.558926 eV Total energy + Delta-G solvation = -3211.649872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00183 -40.24971 -38.35866 -35.49131 -34.17076 -33.47794 -31.80061 -30.15900 -28.36105 -28.13825 -27.33901 -27.04666 -24.42372 -23.57852 -22.12763 -20.88336 -19.76775 -19.64841 -18.85517 -17.47355 -17.09642 -16.24936 -16.01797 -15.65891 -15.49605 -15.36803 -15.09699 -14.84928 -14.38456 -14.25834 -14.07780 -13.87170 -13.61313 -13.43060 -13.30847 -13.20359 -13.01535 -12.72287 -12.64560 -12.44832 -12.29543 -12.12307 -12.05468 -11.91990 -11.62824 -11.40156 -11.26235 -11.12735 -11.05116 -10.84851 -10.11655 -9.76462 -8.39064 -7.89430 -6.02638 0.59889 0.95433 1.35964 1.47415 1.52252 2.22855 2.69825 2.91955 3.26018 3.52929 3.68998 3.71425 3.86178 4.11753 4.17818 4.23858 4.34164 4.39944 4.51085 4.56364 4.59525 4.69128 4.75623 4.76604 4.83831 4.85570 4.89821 4.99960 5.04384 5.12080 5.15440 5.16522 5.18485 5.20764 5.25548 5.31588 5.39834 5.46196 5.51024 5.56044 5.57907 5.60936 5.80211 6.02211 6.11711 6.67604 7.06135 7.10887 7.94030 8.85347 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022939 B = 0.003301 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.337494 B = 8479.206595 C = 8895.264133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.084 0.916 4 C -0.103 4.103 5 C -0.066 4.066 6 C -0.138 4.138 7 C -0.134 4.134 8 C -0.132 4.132 9 C 0.155 3.845 10 H 0.066 0.934 11 N -0.735 5.735 12 C 0.157 3.843 13 C -0.143 4.143 14 C -0.154 4.154 15 C 0.061 3.939 16 O -0.243 6.243 17 C -0.407 4.407 18 H 0.096 0.904 19 C -0.028 4.028 20 N -0.927 5.927 21 Si 1.016 2.984 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.259 1.259 25 C -0.194 4.194 26 C -0.149 4.149 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.401 0.599 41 H 0.147 0.853 42 H 0.113 0.887 43 H 0.270 0.730 44 H 0.115 0.885 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.132 3.833 26.517 26.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.103 0.897 4 C -0.140 4.140 5 C -0.067 4.067 6 C -0.195 4.195 7 C -0.191 4.191 8 C -0.172 4.172 9 C 0.050 3.950 10 H 0.084 0.916 11 N -0.369 5.369 12 C 0.056 3.944 13 C -0.165 4.165 14 C -0.174 4.174 15 C 0.011 3.989 16 O -0.151 6.151 17 C -0.484 4.484 18 H 0.114 0.886 19 C -0.224 4.224 20 N -0.567 5.567 21 Si 0.835 3.165 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.183 1.183 25 C -0.214 4.214 26 C -0.171 4.171 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.237 0.763 41 H 0.165 0.835 42 H 0.132 0.868 43 H 0.079 0.921 44 H 0.133 0.867 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.123 3.795 26.208 26.505 hybrid contribution 0.118 -0.519 -0.884 1.032 sum -1.005 3.276 25.323 25.554 Atomic orbital electron populations 1.21782 0.94355 1.02041 1.01811 1.22141 0.95882 0.99574 0.93481 0.89737 1.22617 0.94497 0.99963 0.96945 1.21332 0.95759 0.95869 0.93695 1.21827 1.00820 0.96756 1.00145 1.21789 0.98044 0.97400 1.01859 1.22836 0.98336 0.99836 0.96145 1.21592 0.95210 0.91345 0.86892 0.91622 1.44476 1.78311 1.12771 1.01324 1.17520 0.98849 0.92442 0.85601 1.20428 1.06034 0.99976 0.90088 1.20233 1.06636 0.93146 0.97367 1.19725 0.99427 0.94763 0.84978 1.83927 1.82598 1.26675 1.21898 1.21700 1.48711 0.82097 0.95852 0.88634 1.26519 0.96543 1.05501 0.93855 1.70205 1.47974 1.37900 1.00605 0.84692 0.79638 0.74161 0.77983 1.18251 1.19677 1.18330 1.21035 1.07197 0.99969 0.93205 1.20474 1.06314 0.95313 0.95040 0.92607 0.91249 0.93626 0.90863 0.90024 0.93346 0.91625 0.92573 0.92648 0.91677 0.93570 0.92263 0.92646 0.76269 0.83544 0.86845 0.92141 0.86700 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.12 71.98 0.66 -1.41 16 2 C -0.09 -1.34 2.80 -9.72 -0.03 -1.37 16 3 H 0.08 1.15 7.25 -2.39 -0.02 1.13 16 4 C -0.10 -1.28 5.23 31.89 0.17 -1.11 16 5 C -0.07 -0.98 0.90 -51.11 -0.05 -1.02 16 6 C -0.14 -1.89 8.46 71.98 0.61 -1.28 16 7 C -0.13 -1.87 8.39 71.98 0.60 -1.26 16 8 C -0.13 -2.64 5.73 31.32 0.18 -2.46 16 9 C 0.16 3.12 2.46 45.72 0.11 3.23 16 10 H 0.07 1.51 6.21 -2.39 -0.01 1.49 16 11 N -0.74 -17.17 5.17 -315.40 -1.63 -18.80 16 12 C 0.16 5.08 6.66 38.21 0.25 5.34 16 13 C -0.14 -4.94 9.89 22.39 0.22 -4.72 16 14 C -0.15 -6.80 9.98 22.37 0.22 -6.58 16 15 C 0.06 3.15 6.65 22.59 0.15 3.30 16 16 O -0.24 -15.25 9.75 -23.04 -0.22 -15.47 16 17 C -0.41 -24.70 9.48 67.91 0.64 -24.06 16 18 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 19 C -0.03 -1.66 5.49 84.82 0.47 -1.19 16 20 N -0.93 -58.97 13.67 21.61 0.30 -58.67 16 21 Si 1.02 44.52 29.55 68.60 2.03 46.54 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 C -0.19 -8.91 9.16 22.37 0.20 -8.70 16 26 C -0.15 -5.47 9.21 22.39 0.21 -5.26 16 27 H 0.05 0.81 8.12 -2.39 -0.02 0.79 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.90 7.95 -2.39 -0.02 0.88 16 31 H 0.08 0.82 8.05 -2.38 -0.02 0.80 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.78 7.36 -2.38 -0.02 0.76 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 1.24 7.84 -2.39 -0.02 1.22 16 39 H 0.05 1.32 7.63 -2.39 -0.02 1.30 16 40 H 0.40 7.76 8.35 -92.71 -0.77 6.98 16 41 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 42 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 43 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 44 H 0.12 5.38 5.63 -2.91 -0.02 5.36 16 45 H 0.13 4.09 6.25 -2.91 -0.02 4.07 16 Total: -1.00 -71.79 356.33 5.29 -66.50 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.20 Total: 28.47 kcal Atomic # 6 Polarization: -53.19 SS G_CDS: 4.62 Total: -48.56 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -1.34 Total: -77.48 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.22 Total: -15.47 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -71.79 5.29 -66.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235547368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.717 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds