Wall clock time and date at job start Tue Mar 31 2020 06:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.43297 * 2 1 4 4 C 1.54270 * 110.48700 * 122.53722 * 2 1 3 5 5 C 1.53866 * 106.60084 * 142.28950 * 4 2 1 6 6 C 1.53005 * 110.03585 * 240.71898 * 5 4 2 7 7 C 1.52994 * 110.03271 * 119.28550 * 5 4 2 8 8 C 1.54274 * 106.59819 * 0.02562 * 5 4 2 9 9 C 1.54887 * 104.31074 * 336.32312 * 8 5 4 10 10 H 1.09001 * 110.75845 * 279.69263 * 9 8 5 11 11 N 1.46500 * 110.75498 * 156.32264 * 9 8 5 12 12 C 1.39672 * 119.99965 * 86.45491 * 11 9 8 13 13 C 1.39002 * 120.04079 * 359.72280 * 12 11 9 14 14 C 1.38156 * 120.06045 * 179.77306 * 13 12 11 15 15 C 1.38163 * 120.14427 * 0.50093 * 14 13 12 16 16 C 1.38919 * 120.07835 * 359.75773 * 15 14 13 17 17 O 1.35752 * 120.02984 * 180.02562 * 16 15 14 18 18 C 1.34834 * 116.99860 * 174.43560 * 17 16 15 19 19 H 1.08004 * 120.00188 * 5.04790 * 18 17 16 20 20 C 1.38651 * 119.99797 * 185.05211 * 18 17 16 21 21 N 1.31560 * 119.99669 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00154 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47082 * 89.99978 * 22 20 18 24 24 H 1.48502 * 109.46915 * 209.99857 * 22 20 18 25 25 H 1.48501 * 109.47259 * 330.00129 * 22 20 18 26 26 C 1.38752 * 120.04069 * 180.02562 * 12 11 9 27 27 H 1.09000 * 109.47658 * 298.90996 * 1 2 3 28 28 H 1.08998 * 109.47391 * 58.91899 * 1 2 3 29 29 H 1.09011 * 109.46779 * 178.91500 * 1 2 3 30 30 H 1.09008 * 110.02838 * 23.00712 * 4 2 1 31 31 H 1.08996 * 110.07212 * 261.60507 * 4 2 1 32 32 H 1.08997 * 109.46771 * 178.62108 * 6 5 4 33 33 H 1.08995 * 109.46875 * 298.62047 * 6 5 4 34 34 H 1.08995 * 109.47152 * 58.61961 * 6 5 4 35 35 H 1.09000 * 109.47327 * 301.37976 * 7 5 4 36 36 H 1.09000 * 109.47629 * 61.38263 * 7 5 4 37 37 H 1.09008 * 109.47574 * 181.38461 * 7 5 4 38 38 H 1.08997 * 110.48407 * 95.06309 * 8 5 4 39 39 H 1.08996 * 110.48855 * 217.57654 * 8 5 4 40 40 H 0.96998 * 120.00206 * 266.44924 * 11 9 8 41 41 H 1.08001 * 119.96899 * 0.02562 * 13 12 11 42 42 H 1.08001 * 119.92677 * 180.23134 * 14 13 12 43 43 H 1.07994 * 119.96170 * 179.76727 * 15 14 13 44 44 H 0.97000 * 119.99884 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.06865 * 359.94424 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0699 -0.7773 1.2183 5 6 3.3165 -1.5395 0.7362 6 6 3.1098 -3.0456 0.9098 7 6 4.5464 -1.0845 1.5242 8 6 3.4911 -1.1984 -0.7582 9 6 2.0734 -0.7839 -1.2244 10 1 1.4599 -1.6625 -1.4236 11 7 2.1471 0.0784 -2.4065 12 6 2.2068 -0.4882 -3.6817 13 6 2.2022 -1.8703 -3.8299 14 6 2.2565 -2.4313 -5.0913 15 6 2.3260 -1.6212 -6.2084 16 6 2.3364 -0.2393 -6.0669 17 8 2.4041 0.5556 -7.1652 18 6 2.2942 1.8847 -6.9666 19 1 2.2409 2.2781 -5.9621 20 6 2.2494 2.7465 -8.0518 21 7 2.1417 4.0432 -7.8580 22 14 2.3422 2.0662 -9.7891 23 1 0.9715 1.7746 -10.2804 24 1 2.9845 3.0668 -10.6788 25 1 3.1444 0.8165 -9.7892 26 6 2.2771 0.3276 -4.8018 27 1 -0.3634 0.4968 0.8996 28 1 -0.3634 0.5305 -0.8801 29 1 -0.3633 -1.0276 -0.0195 30 1 1.3175 -1.4803 1.5760 31 1 2.3409 -0.0838 2.0144 32 1 3.9877 -3.5774 0.5431 33 1 2.9621 -3.2727 1.9655 34 1 2.2324 -3.3594 0.3444 35 1 4.6852 -0.0113 1.3934 36 1 4.4029 -1.3060 2.5818 37 1 5.4277 -1.6119 1.1589 38 1 4.1902 -0.3713 -0.8815 39 1 3.8343 -2.0725 -1.3115 40 1 2.1543 1.0429 -2.3036 41 1 2.1520 -2.5062 -2.9584 42 1 2.2490 -3.5053 -5.2041 43 1 2.3721 -2.0629 -7.1928 44 1 2.1107 4.6462 -8.6172 45 1 2.2849 1.4017 -4.6892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235548179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:16 Heat of formation + Delta-G solvation = -24.117214 kcal Electronic energy + Delta-G solvation = -23085.673147 eV Core-core repulsion = 19874.615958 eV Total energy + Delta-G solvation = -3211.057188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87378 -38.89093 -36.85356 -34.58109 -32.85854 -32.23261 -29.85405 -28.71968 -27.58518 -27.47575 -26.57845 -25.12931 -23.28404 -21.78649 -20.84276 -19.86372 -18.92274 -17.77237 -17.46629 -15.97018 -15.58052 -15.19732 -14.77733 -14.24168 -14.11948 -13.86522 -13.77884 -13.65723 -13.56848 -13.39697 -13.04282 -12.74090 -12.55952 -12.18122 -12.14989 -12.03361 -11.91579 -11.63422 -11.38246 -11.09774 -10.93087 -10.76214 -10.69123 -10.64473 -10.56701 -10.52328 -10.38842 -10.15630 -9.37161 -9.34483 -8.77119 -7.42293 -6.78041 -6.35304 -4.01880 2.34163 2.51381 3.26473 3.30118 3.45550 3.77629 4.29553 4.31542 4.48228 4.62874 4.69099 4.94484 4.98668 5.02080 5.14633 5.19269 5.30435 5.35784 5.38261 5.47934 5.49489 5.57006 5.62287 5.67030 5.78827 5.79853 5.86266 5.90852 5.93318 5.95993 6.05005 6.13223 6.16725 6.22912 6.28889 6.30663 6.38368 6.57062 6.65025 7.02768 7.27452 7.32897 7.58253 7.85947 7.98961 8.11402 8.25668 9.01059 9.66183 10.72730 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.003516 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.616978 B = 7961.037487 C = 8422.296333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.077 0.923 4 C -0.109 4.109 5 C -0.070 4.070 6 C -0.138 4.138 7 C -0.138 4.138 8 C -0.131 4.131 9 C 0.159 3.841 10 H 0.083 0.917 11 N -0.744 5.744 12 C 0.252 3.748 13 C -0.272 4.272 14 C -0.041 4.041 15 C -0.239 4.239 16 C 0.196 3.804 17 O -0.219 6.219 18 C -0.386 4.386 19 H 0.105 0.895 20 C 0.062 3.938 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.292 4.292 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.395 0.605 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.278 0.722 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -11.048 18.142 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 H 0.095 0.905 4 C -0.146 4.146 5 C -0.070 4.070 6 C -0.195 4.195 7 C -0.195 4.195 8 C -0.170 4.170 9 C 0.053 3.947 10 H 0.101 0.899 11 N -0.373 5.373 12 C 0.150 3.850 13 C -0.295 4.295 14 C -0.060 4.060 15 C -0.260 4.260 16 C 0.143 3.857 17 O -0.124 6.124 18 C -0.461 4.461 19 H 0.122 0.878 20 C -0.141 4.141 21 N -0.522 5.522 22 Si 0.730 3.270 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.315 4.315 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.230 0.770 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.088 0.912 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.364 -11.019 17.913 21.034 hybrid contribution 0.060 0.408 -0.609 0.736 sum 0.424 -10.610 17.304 20.302 Atomic orbital electron populations 1.21794 0.94603 1.01891 1.01785 1.22229 0.95899 0.99568 0.94463 0.90510 1.22309 0.96636 0.98617 0.97083 1.21121 0.95120 0.95390 0.95406 1.21913 1.01732 0.94664 1.01226 1.21907 0.97174 1.01093 0.99350 1.22994 0.98231 1.01833 0.93952 1.21843 0.95235 0.93467 0.84200 0.89928 1.44551 1.82944 1.07642 1.02186 1.17480 0.91552 0.91873 0.84091 1.20151 1.19856 0.92466 0.96983 1.20369 0.96121 0.97927 0.91616 1.20010 1.16646 0.90684 0.98644 1.18798 0.90790 0.90083 0.86011 1.83582 1.80143 1.19050 1.29630 1.20755 1.51379 0.77334 0.96673 0.87753 1.24456 0.95816 0.94331 0.99467 1.69651 1.48417 1.01623 1.32538 0.86193 0.79091 0.79335 0.82354 1.19951 1.20909 1.18334 1.20616 1.19809 1.00144 0.90974 0.92814 0.92221 0.92650 0.91441 0.91654 0.92689 0.92904 0.92525 0.92634 0.92920 0.92745 0.91165 0.91308 0.77044 0.87666 0.87158 0.87035 0.91205 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.12 37.16 0.34 -1.05 16 2 C -0.10 -1.02 3.07 -88.78 -0.27 -1.29 16 3 H 0.08 0.78 8.03 -51.93 -0.42 0.37 16 4 C -0.11 -0.93 5.68 -25.62 -0.15 -1.07 16 5 C -0.07 -0.62 0.94 -153.39 -0.14 -0.77 16 6 C -0.14 -1.13 8.15 37.16 0.30 -0.83 16 7 C -0.14 -1.14 8.15 37.15 0.30 -0.84 16 8 C -0.13 -1.46 5.57 -25.07 -0.14 -1.60 16 9 C 0.16 1.89 2.25 -65.77 -0.15 1.75 16 10 H 0.08 1.04 6.61 -51.93 -0.34 0.69 16 11 N -0.74 -11.10 5.39 -50.10 -0.27 -11.37 16 12 C 0.25 4.66 6.65 -83.81 -0.56 4.10 16 13 C -0.27 -4.71 9.22 -39.33 -0.36 -5.08 16 14 C -0.04 -0.73 10.03 -39.64 -0.40 -1.13 16 15 C -0.24 -4.96 9.99 -39.36 -0.39 -5.35 16 16 C 0.20 4.68 6.64 -39.14 -0.26 4.42 16 17 O -0.22 -5.95 8.58 0.03 0.00 -5.95 16 18 C -0.39 -11.09 9.94 30.88 0.31 -10.79 16 19 H 0.11 3.07 5.43 -52.48 -0.29 2.78 16 20 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 21 N -0.88 -25.90 13.96 55.48 0.77 -25.13 16 22 Si 0.90 22.10 28.62 -169.99 -4.86 17.24 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.26 -6.37 7.11 56.52 0.40 -5.96 16 26 C -0.29 -6.46 9.01 -39.20 -0.35 -6.82 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.07 0.54 7.37 -51.92 -0.38 0.16 16 31 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 39 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 40 H 0.40 5.72 8.55 -40.82 -0.35 5.37 16 41 H 0.11 1.58 6.28 -52.49 -0.33 1.25 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 44 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -29.59 356.73 -8.40 -37.99 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.40 Total: 6.50 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -2.02 Total: -24.67 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.50 Total: -36.49 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: 0.00 Total: -5.95 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.86 Total: 17.24 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.59 -8.40 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235548179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.877 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds