Wall clock time and date at job start Tue Mar 31 2020 06:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.43297 * 2 1 4 4 C 1.54270 * 110.48700 * 122.53722 * 2 1 3 5 5 C 1.53866 * 106.60084 * 142.28950 * 4 2 1 6 6 C 1.53005 * 110.03585 * 240.71898 * 5 4 2 7 7 C 1.52994 * 110.03271 * 119.28550 * 5 4 2 8 8 C 1.54274 * 106.59819 * 0.02562 * 5 4 2 9 9 C 1.54887 * 104.31074 * 336.32312 * 8 5 4 10 10 H 1.09001 * 110.75845 * 279.69263 * 9 8 5 11 11 N 1.46500 * 110.75498 * 156.32264 * 9 8 5 12 12 C 1.39672 * 119.99965 * 86.45491 * 11 9 8 13 13 C 1.39002 * 120.04079 * 359.72280 * 12 11 9 14 14 C 1.38156 * 120.06045 * 179.77306 * 13 12 11 15 15 C 1.38163 * 120.14427 * 0.50093 * 14 13 12 16 16 C 1.38919 * 120.07835 * 359.75773 * 15 14 13 17 17 O 1.35752 * 120.02984 * 180.02562 * 16 15 14 18 18 C 1.34834 * 116.99860 * 174.43560 * 17 16 15 19 19 H 1.08004 * 120.00188 * 5.04790 * 18 17 16 20 20 C 1.38651 * 119.99797 * 185.05211 * 18 17 16 21 21 N 1.31560 * 119.99669 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00154 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47082 * 89.99978 * 22 20 18 24 24 H 1.48502 * 109.46915 * 209.99857 * 22 20 18 25 25 H 1.48501 * 109.47259 * 330.00129 * 22 20 18 26 26 C 1.38752 * 120.04069 * 180.02562 * 12 11 9 27 27 H 1.09000 * 109.47658 * 298.90996 * 1 2 3 28 28 H 1.08998 * 109.47391 * 58.91899 * 1 2 3 29 29 H 1.09011 * 109.46779 * 178.91500 * 1 2 3 30 30 H 1.09008 * 110.02838 * 23.00712 * 4 2 1 31 31 H 1.08996 * 110.07212 * 261.60507 * 4 2 1 32 32 H 1.08997 * 109.46771 * 178.62108 * 6 5 4 33 33 H 1.08995 * 109.46875 * 298.62047 * 6 5 4 34 34 H 1.08995 * 109.47152 * 58.61961 * 6 5 4 35 35 H 1.09000 * 109.47327 * 301.37976 * 7 5 4 36 36 H 1.09000 * 109.47629 * 61.38263 * 7 5 4 37 37 H 1.09008 * 109.47574 * 181.38461 * 7 5 4 38 38 H 1.08997 * 110.48407 * 95.06309 * 8 5 4 39 39 H 1.08996 * 110.48855 * 217.57654 * 8 5 4 40 40 H 0.96998 * 120.00206 * 266.44924 * 11 9 8 41 41 H 1.08001 * 119.96899 * 0.02562 * 13 12 11 42 42 H 1.08001 * 119.92677 * 180.23134 * 14 13 12 43 43 H 1.07994 * 119.96170 * 179.76727 * 15 14 13 44 44 H 0.97000 * 119.99884 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.06865 * 359.94424 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0699 -0.7773 1.2183 5 6 3.3165 -1.5395 0.7362 6 6 3.1098 -3.0456 0.9098 7 6 4.5464 -1.0845 1.5242 8 6 3.4911 -1.1984 -0.7582 9 6 2.0734 -0.7839 -1.2244 10 1 1.4599 -1.6625 -1.4236 11 7 2.1471 0.0784 -2.4065 12 6 2.2068 -0.4882 -3.6817 13 6 2.2022 -1.8703 -3.8299 14 6 2.2565 -2.4313 -5.0913 15 6 2.3260 -1.6212 -6.2084 16 6 2.3364 -0.2393 -6.0669 17 8 2.4041 0.5556 -7.1652 18 6 2.2942 1.8847 -6.9666 19 1 2.2409 2.2781 -5.9621 20 6 2.2494 2.7465 -8.0518 21 7 2.1417 4.0432 -7.8580 22 14 2.3422 2.0662 -9.7891 23 1 0.9715 1.7746 -10.2804 24 1 2.9845 3.0668 -10.6788 25 1 3.1444 0.8165 -9.7892 26 6 2.2771 0.3276 -4.8018 27 1 -0.3634 0.4968 0.8996 28 1 -0.3634 0.5305 -0.8801 29 1 -0.3633 -1.0276 -0.0195 30 1 1.3175 -1.4803 1.5760 31 1 2.3409 -0.0838 2.0144 32 1 3.9877 -3.5774 0.5431 33 1 2.9621 -3.2727 1.9655 34 1 2.2324 -3.3594 0.3444 35 1 4.6852 -0.0113 1.3934 36 1 4.4029 -1.3060 2.5818 37 1 5.4277 -1.6119 1.1589 38 1 4.1902 -0.3713 -0.8815 39 1 3.8343 -2.0725 -1.3115 40 1 2.1543 1.0429 -2.3036 41 1 2.1520 -2.5062 -2.9584 42 1 2.2490 -3.5053 -5.2041 43 1 2.3721 -2.0629 -7.1928 44 1 2.1107 4.6462 -8.6172 45 1 2.2849 1.4017 -4.6892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235548179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:16 Heat of formation + Delta-G solvation = -39.925689 kcal Electronic energy + Delta-G solvation = -23086.358653 eV Core-core repulsion = 19874.615958 eV Total energy + Delta-G solvation = -3211.742695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06609 -40.34399 -38.45725 -35.79977 -34.41221 -33.75052 -31.21247 -30.23626 -28.76757 -28.13586 -27.36236 -27.14117 -24.30073 -23.40206 -22.20471 -21.04500 -19.80722 -19.59750 -19.10671 -17.23623 -17.01630 -16.69038 -16.02652 -15.68605 -15.66348 -15.38233 -14.89096 -14.71831 -14.63813 -14.49496 -14.32869 -14.09304 -13.85624 -13.60799 -13.47632 -13.25351 -12.78648 -12.65599 -12.56555 -12.39310 -12.22997 -12.16797 -12.03368 -11.89495 -11.53801 -11.45370 -11.36000 -11.28791 -11.22672 -10.94335 -10.58149 -9.17421 -8.48689 -8.22588 -6.21079 0.74273 0.89150 1.31309 1.36362 1.52857 2.29359 2.53750 2.82686 3.15026 3.26128 3.49828 3.71278 3.83042 4.15016 4.22732 4.25303 4.35506 4.41434 4.49580 4.53743 4.57166 4.59738 4.69686 4.74969 4.85076 4.86786 4.91587 4.97561 5.00181 5.03988 5.09253 5.14583 5.17229 5.23862 5.26723 5.41137 5.43060 5.45611 5.48491 5.50891 5.60271 5.76085 5.85411 5.91321 6.19421 6.62983 6.84013 6.86478 7.63756 8.63209 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.003516 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.616978 B = 7961.037487 C = 8422.296333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.103 4.103 5 C -0.065 4.065 6 C -0.137 4.137 7 C -0.137 4.137 8 C -0.128 4.128 9 C 0.153 3.847 10 H 0.086 0.914 11 N -0.738 5.738 12 C 0.256 3.744 13 C -0.257 4.257 14 C -0.027 4.027 15 C -0.252 4.252 16 C 0.159 3.841 17 O -0.246 6.246 18 C -0.396 4.396 19 H 0.078 0.922 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.267 1.267 25 H -0.263 1.263 26 C -0.314 4.314 27 H 0.067 0.933 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.395 0.605 41 H 0.140 0.860 42 H 0.157 0.843 43 H 0.121 0.879 44 H 0.284 0.716 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 -14.092 19.957 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.089 0.911 4 C -0.140 4.140 5 C -0.066 4.066 6 C -0.194 4.194 7 C -0.195 4.195 8 C -0.168 4.168 9 C 0.048 3.952 10 H 0.104 0.896 11 N -0.365 5.365 12 C 0.152 3.848 13 C -0.279 4.279 14 C -0.045 4.045 15 C -0.273 4.273 16 C 0.110 3.890 17 O -0.153 6.153 18 C -0.473 4.473 19 H 0.095 0.905 20 C -0.189 4.189 21 N -0.567 5.567 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.191 1.191 25 H -0.188 1.188 26 C -0.338 4.338 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.229 0.771 41 H 0.157 0.843 42 H 0.174 0.826 43 H 0.139 0.861 44 H 0.093 0.907 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.165 -14.083 19.799 24.298 hybrid contribution 0.117 1.196 -0.855 1.475 sum 0.282 -12.888 18.944 22.914 Atomic orbital electron populations 1.21779 0.94243 1.02248 1.01590 1.22206 0.96131 0.99275 0.94148 0.91078 1.22293 0.96601 0.98774 0.96377 1.21094 0.95610 0.96286 0.93588 1.21907 1.01726 0.93620 1.02172 1.21902 0.96791 1.00671 1.00115 1.22945 0.97013 1.00977 0.95821 1.22100 0.96164 0.93354 0.83539 0.89600 1.44753 1.81530 1.08212 1.02029 1.17584 0.90417 0.92410 0.84403 1.20597 1.17103 0.91922 0.98317 1.20878 0.93308 0.99922 0.90408 1.20298 1.17130 0.89381 1.00461 1.19390 0.92458 0.91307 0.85891 1.83522 1.82651 1.18022 1.31114 1.20693 1.51902 0.78730 0.95954 0.90468 1.25281 0.95587 0.94563 1.03467 1.69734 1.50271 1.02741 1.33929 0.85214 0.79384 0.78610 0.77474 1.19044 1.19141 1.18767 1.20573 1.21713 0.99306 0.92201 0.91370 0.94198 0.91900 0.90165 0.90721 0.92771 0.91574 0.92470 0.93244 0.91500 0.92950 0.92666 0.91795 0.77117 0.84281 0.82555 0.86107 0.90661 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.12 71.98 0.66 -1.80 16 2 C -0.10 -1.76 3.07 -9.60 -0.03 -1.79 16 3 H 0.07 1.37 8.03 -2.39 -0.02 1.35 16 4 C -0.10 -1.43 5.68 31.32 0.18 -1.25 16 5 C -0.07 -0.98 0.94 -51.46 -0.05 -1.03 16 6 C -0.14 -1.76 8.15 71.98 0.59 -1.18 16 7 C -0.14 -1.95 8.15 71.98 0.59 -1.36 16 8 C -0.13 -2.62 5.57 31.67 0.18 -2.44 16 9 C 0.15 3.36 2.25 46.39 0.10 3.46 16 10 H 0.09 1.87 6.61 -2.39 -0.02 1.86 16 11 N -0.74 -21.76 5.39 -312.42 -1.68 -23.44 16 12 C 0.26 9.38 6.65 38.20 0.25 9.63 16 13 C -0.26 -8.15 9.22 22.43 0.21 -7.94 16 14 C -0.03 -0.86 10.03 22.23 0.22 -0.63 16 15 C -0.25 -10.22 9.99 22.42 0.22 -9.99 16 16 C 0.16 7.87 6.64 22.56 0.15 8.02 16 17 O -0.25 -13.97 8.58 -22.80 -0.20 -14.16 16 18 C -0.40 -24.23 9.94 67.92 0.68 -23.55 16 19 H 0.08 4.97 5.43 -2.91 -0.02 4.95 16 20 C 0.01 0.53 5.49 84.83 0.47 0.99 16 21 N -0.93 -56.59 13.96 21.61 0.30 -56.29 16 22 Si 0.97 46.78 28.62 68.60 1.96 48.74 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 26 C -0.31 -14.58 9.01 22.52 0.20 -14.37 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 0.96 7.37 -2.38 -0.02 0.94 16 31 H 0.07 0.95 7.67 -2.39 -0.02 0.93 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.05 1.30 7.85 -2.39 -0.02 1.28 16 39 H 0.06 1.36 7.82 -2.39 -0.02 1.34 16 40 H 0.39 11.77 8.55 -92.71 -0.79 10.98 16 41 H 0.14 3.53 6.28 -2.91 -0.02 3.51 16 42 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 43 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 44 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 45 H 0.10 5.20 5.64 -2.91 -0.02 5.19 16 Total: -1.00 -67.64 356.73 5.18 -62.47 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.18 Total: 27.92 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 4.61 Total: -45.24 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -1.38 Total: -79.73 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.20 Total: -14.16 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.96 Total: 48.74 kcal Total: -67.64 5.18 -62.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235548179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.541 kcal (2) G-P(sol) polarization free energy of solvation -67.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds