Wall clock time and date at job start Tue Mar 31 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47563 * 2 1 4 4 H 1.09002 * 109.47036 * 54.06776 * 3 2 1 5 5 C 1.53001 * 109.46971 * 294.07033 * 3 2 1 6 6 C 1.52999 * 109.47437 * 174.06972 * 3 2 1 7 7 H 1.09006 * 109.46923 * 298.85328 * 6 3 2 8 8 C 1.50698 * 109.47395 * 178.85459 * 6 3 2 9 9 O 1.21277 * 119.99640 * 236.21279 * 8 6 3 10 10 N 1.34776 * 119.99978 * 56.20450 * 8 6 3 11 11 C 1.46506 * 119.99450 * 174.97119 * 10 8 6 12 12 H 1.08995 * 109.47040 * 35.00411 * 11 10 8 13 13 C 1.53001 * 109.46978 * 274.99842 * 11 10 8 14 14 C 1.50698 * 109.46680 * 155.00281 * 11 10 8 15 15 H 1.08005 * 120.00066 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00117 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99903 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00269 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47122 * 60.00126 * 18 16 14 20 20 H 1.48504 * 109.47336 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47335 * 300.00175 * 18 16 14 22 22 C 1.50707 * 109.47038 * 58.84853 * 6 3 2 23 23 C 1.38233 * 119.99591 * 71.02897 * 22 6 3 24 24 C 1.38236 * 119.99747 * 179.78482 * 23 22 6 25 25 C 1.38233 * 119.99765 * 0.44164 * 24 23 22 26 26 C 1.38234 * 120.00259 * 359.80836 * 25 24 23 27 27 C 1.38230 * 119.99885 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46880 * 300.00313 * 1 2 3 29 29 H 1.09000 * 109.47025 * 59.99710 * 1 2 3 30 30 H 1.08995 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46880 * 239.99687 * 2 1 3 32 32 H 1.09000 * 109.47025 * 120.00290 * 2 1 3 33 33 H 1.09005 * 109.46585 * 307.99708 * 5 3 2 34 34 H 1.08995 * 109.47120 * 67.99288 * 5 3 2 35 35 H 1.09000 * 109.46901 * 188.00267 * 5 3 2 36 36 H 0.96997 * 120.00028 * 354.97285 * 10 8 6 37 37 H 1.08996 * 109.47395 * 300.00617 * 13 11 10 38 38 H 1.09003 * 109.46978 * 60.00179 * 13 11 10 39 39 H 1.08994 * 109.46869 * 180.02562 * 13 11 10 40 40 H 0.96997 * 120.00492 * 180.02562 * 17 16 14 41 41 H 1.07999 * 120.00471 * 359.97438 * 23 22 6 42 42 H 1.07995 * 120.00234 * 180.26872 * 24 23 22 43 43 H 1.07998 * 120.00054 * 179.83232 * 25 24 23 44 44 H 1.08003 * 120.00062 * 180.02562 * 26 25 24 45 45 H 1.08007 * 120.00023 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5926 1.9860 0.8321 5 6 1.6554 2.1194 -1.3171 6 6 3.5628 1.4450 0.1490 7 1 3.8358 0.9809 1.0968 8 6 4.0680 2.8645 0.1208 9 8 4.9036 3.1946 -0.6938 10 7 3.5911 3.7671 1.0007 11 6 4.1600 5.1164 1.0467 12 1 4.4387 5.4277 0.0401 13 6 5.4003 5.1166 1.9426 14 6 3.1380 6.0736 1.6037 15 1 2.1621 5.7131 1.8939 16 6 3.4486 7.4097 1.7428 17 7 4.6371 7.8487 1.3899 18 14 2.1816 8.5964 2.4324 19 1 1.8007 8.1721 3.8036 20 1 2.7586 9.9639 2.4804 21 1 0.9782 8.5966 1.5622 22 6 4.1799 0.6693 -0.9862 23 6 4.1671 1.1903 -2.2665 24 6 4.7371 0.4809 -3.3071 25 6 5.3118 -0.7536 -3.0688 26 6 5.3200 -1.2768 -1.7894 27 6 4.7540 -0.5654 -0.7481 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9813 1.4998 -2.1527 34 1 0.5736 2.2453 -1.3585 35 1 2.1376 3.0950 -1.3785 36 1 2.8712 3.5234 1.6035 37 1 5.1215 4.8052 2.9492 38 1 6.1395 4.4241 1.5398 39 1 5.8233 6.1205 1.9772 40 1 4.8558 8.7886 1.4880 41 1 3.7145 2.1529 -2.4534 42 1 4.7310 0.8898 -4.3066 43 1 5.7547 -1.3091 -3.8822 44 1 5.7693 -2.2411 -1.6032 45 1 4.7600 -0.9744 0.2515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250569189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:59 Heat of formation + Delta-G solvation = -34.499885 kcal Electronic energy + Delta-G solvation = -23800.974624 eV Core-core repulsion = 20589.467209 eV Total energy + Delta-G solvation = -3211.507415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.32352 -38.20294 -36.36180 -34.77126 -32.36065 -32.00228 -30.83764 -29.55567 -28.68340 -27.02138 -25.24351 -24.11899 -22.26573 -22.05082 -20.84168 -19.95848 -18.98651 -17.18032 -16.36343 -15.71654 -15.55100 -15.51106 -14.96803 -14.63797 -14.24773 -14.13024 -13.57449 -13.29868 -13.22264 -12.96799 -12.49503 -12.39689 -12.27916 -12.00109 -11.89676 -11.71358 -11.53348 -11.18362 -11.07699 -10.95747 -10.88348 -10.75109 -10.64211 -10.49742 -10.33189 -10.24352 -10.19485 -9.03920 -8.95148 -8.60634 -8.53088 -8.44593 -7.85646 -6.11189 -4.20416 1.55077 1.64723 3.25618 3.31081 3.31994 3.42531 3.91123 4.21201 4.40643 4.66615 4.91501 4.95433 5.07599 5.10890 5.17619 5.21021 5.31817 5.34625 5.55393 5.56868 5.63367 5.69551 5.72391 5.82881 5.90114 5.99407 6.04895 6.09742 6.15665 6.19606 6.27242 6.42137 6.49562 6.63602 6.72622 6.83064 6.88576 6.97214 7.16350 7.21371 7.49056 7.58691 7.71215 7.93018 8.16479 8.70022 8.80195 9.16727 9.47348 10.94713 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019328 B = 0.004479 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.351051 B = 6250.559293 C = 7062.733266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.077 4.077 4 H 0.079 0.921 5 C -0.159 4.159 6 C -0.072 4.072 7 H 0.097 0.903 8 C 0.509 3.491 9 O -0.547 6.547 10 N -0.708 5.708 11 C 0.265 3.735 12 H 0.049 0.951 13 C -0.147 4.147 14 C -0.533 4.533 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.884 5.884 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.053 4.053 23 C -0.077 4.077 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.116 4.116 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.387 0.613 37 H 0.026 0.974 38 H 0.012 0.988 39 H 0.090 0.910 40 H 0.264 0.736 41 H 0.129 0.871 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 -17.165 -3.816 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.096 4.096 4 H 0.098 0.902 5 C -0.216 4.216 6 C -0.093 4.093 7 H 0.115 0.885 8 C 0.293 3.707 9 O -0.425 6.425 10 N -0.356 5.356 11 C 0.163 3.837 12 H 0.067 0.933 13 C -0.206 4.206 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.054 4.054 23 C -0.095 4.095 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.220 0.780 37 H 0.045 0.955 38 H 0.032 0.968 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.155 -16.704 -4.387 17.763 hybrid contribution -0.850 0.605 0.803 1.317 sum -5.005 -16.098 -3.585 17.235 Atomic orbital electron populations 1.21805 0.95918 1.01221 1.02033 1.21574 0.95699 0.95904 1.02163 1.21105 0.92172 0.96854 0.99453 0.90244 1.22178 1.01321 1.01066 0.97009 1.20515 0.96070 0.94420 0.98319 0.88502 1.20138 0.82412 0.86514 0.81598 1.90671 1.33682 1.80132 1.38039 1.46503 1.37786 1.14412 1.36925 1.18712 0.91479 0.76271 0.97220 0.93346 1.22085 0.98108 1.02496 0.97867 1.21174 0.99209 0.92811 1.43912 0.92189 1.24879 0.95529 0.98099 0.95147 1.69891 1.19870 1.15474 1.46890 0.86528 0.81316 0.79900 0.79461 1.20189 1.21153 1.20188 1.19291 0.98038 0.94097 0.93965 1.21214 0.97218 0.99114 0.91991 1.21125 0.99256 0.95169 0.99109 1.21051 1.00335 0.96237 0.96785 1.20973 1.00842 0.99904 0.93102 1.20955 0.98888 0.94696 0.98868 0.92724 0.92497 0.93110 0.91642 0.92097 0.91807 0.92472 0.91836 0.78028 0.95514 0.96844 0.89162 0.92553 0.85365 0.86489 0.86729 0.86609 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.69 37.16 0.36 -1.06 16 2 C -0.12 -1.20 4.99 -26.73 -0.13 -1.34 16 3 C -0.08 -0.96 2.08 -90.62 -0.19 -1.15 16 4 H 0.08 0.97 7.30 -51.93 -0.38 0.59 16 5 C -0.16 -2.13 7.15 37.16 0.27 -1.86 16 6 C -0.07 -1.05 2.36 -92.92 -0.22 -1.27 16 7 H 0.10 1.27 7.92 -51.93 -0.41 0.86 16 8 C 0.51 9.97 5.41 -10.99 -0.06 9.91 16 9 O -0.55 -12.89 14.04 5.56 0.08 -12.81 16 10 N -0.71 -14.52 4.97 -54.93 -0.27 -14.79 16 11 C 0.26 6.71 2.60 -69.08 -0.18 6.53 16 12 H 0.05 1.42 7.51 -51.93 -0.39 1.03 16 13 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 14 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -24.91 11.32 55.43 0.63 -24.29 16 18 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 22 C -0.05 -0.79 3.27 -104.62 -0.34 -1.13 16 23 C -0.08 -1.20 6.08 -39.58 -0.24 -1.44 16 24 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 25 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 26 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 27 C -0.12 -1.50 9.60 -39.59 -0.38 -1.88 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.54 6.78 -51.93 -0.35 0.19 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.72 7.34 -51.93 -0.38 0.34 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.83 5.65 -51.93 -0.29 0.53 16 34 H 0.06 0.68 6.99 -51.93 -0.36 0.32 16 35 H 0.06 1.03 6.59 -51.93 -0.34 0.69 16 36 H 0.39 6.92 7.63 -40.82 -0.31 6.61 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.13 2.16 5.36 -52.49 -0.28 1.88 16 42 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 45 H 0.12 1.27 7.98 -52.48 -0.42 0.86 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -30.17 351.90 -8.81 -38.98 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.16 Total: 8.74 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.36 Total: -16.70 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.35 Total: -39.08 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.17 -8.81 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250569189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.477 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds