Wall clock time and date at job start Tue Mar 31 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47563 * 2 1 4 4 H 1.09002 * 109.47036 * 54.06776 * 3 2 1 5 5 C 1.53001 * 109.46971 * 294.07033 * 3 2 1 6 6 C 1.52999 * 109.47437 * 174.06972 * 3 2 1 7 7 H 1.09006 * 109.46923 * 298.85328 * 6 3 2 8 8 C 1.50698 * 109.47395 * 178.85459 * 6 3 2 9 9 O 1.21277 * 119.99640 * 236.21279 * 8 6 3 10 10 N 1.34776 * 119.99978 * 56.20450 * 8 6 3 11 11 C 1.46506 * 119.99450 * 174.97119 * 10 8 6 12 12 H 1.08995 * 109.47040 * 35.00411 * 11 10 8 13 13 C 1.53001 * 109.46978 * 274.99842 * 11 10 8 14 14 C 1.50698 * 109.46680 * 155.00281 * 11 10 8 15 15 H 1.08005 * 120.00066 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00117 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99903 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00269 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47122 * 60.00126 * 18 16 14 20 20 H 1.48504 * 109.47336 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47335 * 300.00175 * 18 16 14 22 22 C 1.50707 * 109.47038 * 58.84853 * 6 3 2 23 23 C 1.38233 * 119.99591 * 71.02897 * 22 6 3 24 24 C 1.38236 * 119.99747 * 179.78482 * 23 22 6 25 25 C 1.38233 * 119.99765 * 0.44164 * 24 23 22 26 26 C 1.38234 * 120.00259 * 359.80836 * 25 24 23 27 27 C 1.38230 * 119.99885 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46880 * 300.00313 * 1 2 3 29 29 H 1.09000 * 109.47025 * 59.99710 * 1 2 3 30 30 H 1.08995 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46880 * 239.99687 * 2 1 3 32 32 H 1.09000 * 109.47025 * 120.00290 * 2 1 3 33 33 H 1.09005 * 109.46585 * 307.99708 * 5 3 2 34 34 H 1.08995 * 109.47120 * 67.99288 * 5 3 2 35 35 H 1.09000 * 109.46901 * 188.00267 * 5 3 2 36 36 H 0.96997 * 120.00028 * 354.97285 * 10 8 6 37 37 H 1.08996 * 109.47395 * 300.00617 * 13 11 10 38 38 H 1.09003 * 109.46978 * 60.00179 * 13 11 10 39 39 H 1.08994 * 109.46869 * 180.02562 * 13 11 10 40 40 H 0.96997 * 120.00492 * 180.02562 * 17 16 14 41 41 H 1.07999 * 120.00471 * 359.97438 * 23 22 6 42 42 H 1.07995 * 120.00234 * 180.26872 * 24 23 22 43 43 H 1.07998 * 120.00054 * 179.83232 * 25 24 23 44 44 H 1.08003 * 120.00062 * 180.02562 * 26 25 24 45 45 H 1.08007 * 120.00023 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5926 1.9860 0.8321 5 6 1.6554 2.1194 -1.3171 6 6 3.5628 1.4450 0.1490 7 1 3.8358 0.9809 1.0968 8 6 4.0680 2.8645 0.1208 9 8 4.9036 3.1946 -0.6938 10 7 3.5911 3.7671 1.0007 11 6 4.1600 5.1164 1.0467 12 1 4.4387 5.4277 0.0401 13 6 5.4003 5.1166 1.9426 14 6 3.1380 6.0736 1.6037 15 1 2.1621 5.7131 1.8939 16 6 3.4486 7.4097 1.7428 17 7 4.6371 7.8487 1.3899 18 14 2.1816 8.5964 2.4324 19 1 1.8007 8.1721 3.8036 20 1 2.7586 9.9639 2.4804 21 1 0.9782 8.5966 1.5622 22 6 4.1799 0.6693 -0.9862 23 6 4.1671 1.1903 -2.2665 24 6 4.7371 0.4809 -3.3071 25 6 5.3118 -0.7536 -3.0688 26 6 5.3200 -1.2768 -1.7894 27 6 4.7540 -0.5654 -0.7481 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9813 1.4998 -2.1527 34 1 0.5736 2.2453 -1.3585 35 1 2.1376 3.0950 -1.3785 36 1 2.8712 3.5234 1.6035 37 1 5.1215 4.8052 2.9492 38 1 6.1395 4.4241 1.5398 39 1 5.8233 6.1205 1.9772 40 1 4.8558 8.7886 1.4880 41 1 3.7145 2.1529 -2.4534 42 1 4.7310 0.8898 -4.3066 43 1 5.7547 -1.3091 -3.8822 44 1 5.7693 -2.2411 -1.6032 45 1 4.7600 -0.9744 0.2515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250569189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:58 Heat of formation + Delta-G solvation = -51.082030 kcal Electronic energy + Delta-G solvation = -23801.693680 eV Core-core repulsion = 20589.467209 eV Total energy + Delta-G solvation = -3212.226471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60938 -39.55160 -37.46302 -36.66475 -34.27386 -33.04405 -31.84515 -31.09754 -29.97962 -28.25447 -27.33045 -25.14351 -23.46969 -23.26886 -22.22323 -21.39437 -20.37430 -18.86014 -17.55223 -17.35133 -17.15457 -16.63289 -16.42095 -15.77362 -15.65417 -15.38462 -14.79567 -14.73007 -14.36314 -14.33556 -13.99565 -13.75945 -13.60210 -13.26408 -13.01296 -12.94377 -12.89859 -12.80001 -12.72975 -12.58585 -12.27197 -12.16295 -12.11696 -11.84616 -11.63972 -11.42538 -11.28459 -11.10568 -10.62841 -10.47820 -9.72465 -9.63170 -9.48954 -8.17012 -6.34527 0.52597 0.62188 1.44347 1.46393 1.54150 1.86857 2.35891 2.63268 3.03974 3.13485 3.58505 3.81328 3.90735 4.12309 4.16560 4.24622 4.29400 4.37236 4.44231 4.64336 4.68484 4.71766 4.73367 4.75512 4.84460 4.88233 4.90617 5.03424 5.09587 5.16036 5.19973 5.22229 5.26098 5.27735 5.44089 5.48592 5.56815 5.62866 5.64457 5.70058 5.71307 5.82607 5.92406 6.10799 6.21646 6.73497 7.01054 7.33386 7.60325 8.89061 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019328 B = 0.004479 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.351051 B = 6250.559293 C = 7062.733266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.073 4.073 4 H 0.085 0.915 5 C -0.153 4.153 6 C -0.059 4.059 7 H 0.121 0.879 8 C 0.507 3.493 9 O -0.592 6.592 10 N -0.704 5.704 11 C 0.272 3.728 12 H -0.005 1.005 13 C -0.133 4.133 14 C -0.545 4.545 15 H 0.073 0.927 16 C 0.015 3.985 17 N -0.919 5.919 18 Si 0.971 3.029 19 H -0.263 1.263 20 H -0.287 1.287 21 H -0.271 1.271 22 C -0.070 4.070 23 C -0.102 4.102 24 C -0.143 4.143 25 C -0.126 4.126 26 C -0.128 4.128 27 C -0.119 4.119 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.403 0.597 37 H 0.041 0.959 38 H 0.009 0.991 39 H 0.066 0.934 40 H 0.265 0.735 41 H 0.100 0.900 42 H 0.125 0.875 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 -19.716 -2.545 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.091 4.091 4 H 0.103 0.897 5 C -0.210 4.210 6 C -0.081 4.081 7 H 0.139 0.861 8 C 0.294 3.706 9 O -0.473 6.473 10 N -0.353 5.353 11 C 0.169 3.831 12 H 0.013 0.987 13 C -0.192 4.192 14 C -0.583 4.583 15 H 0.091 0.909 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.795 3.205 19 H -0.187 1.187 20 H -0.213 1.213 21 H -0.196 1.196 22 C -0.070 4.070 23 C -0.120 4.120 24 C -0.161 4.161 25 C -0.144 4.144 26 C -0.146 4.146 27 C -0.137 4.137 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.238 0.762 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.143 0.857 43 H 0.160 0.840 44 H 0.166 0.834 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.529 -19.291 -3.102 20.306 hybrid contribution -0.372 1.363 0.307 1.445 sum -5.901 -17.929 -2.795 19.081 Atomic orbital electron populations 1.21799 0.94967 1.02134 1.01982 1.21494 0.96402 0.93824 1.02686 1.21132 0.90599 0.98677 0.98734 0.89704 1.22112 1.01733 0.99105 0.98059 1.20490 0.97412 0.90446 0.99710 0.86083 1.21037 0.81286 0.88261 0.80016 1.90647 1.35754 1.81335 1.39568 1.46242 1.38293 1.12986 1.37815 1.18281 0.91921 0.78722 0.94192 0.98701 1.21899 0.97805 1.00915 0.98545 1.21504 0.99783 0.93327 1.43693 0.90921 1.25793 0.97420 0.99962 0.95351 1.70051 1.21903 1.15784 1.47949 0.85416 0.78582 0.77242 0.79211 1.18739 1.21252 1.19637 1.19357 0.99181 0.95160 0.93345 1.21131 0.98807 0.98618 0.93426 1.21335 0.99536 0.96078 0.99172 1.21407 0.99366 0.95506 0.98075 1.21395 0.99759 1.00900 0.92538 1.21258 0.98038 0.93882 1.00481 0.92338 0.93028 0.91735 0.92171 0.90453 0.91756 0.91073 0.95684 0.76236 0.93969 0.97227 0.91574 0.92616 0.88203 0.85682 0.83976 0.83407 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.69 71.98 0.70 -1.72 16 2 C -0.11 -1.93 4.99 30.59 0.15 -1.78 16 3 C -0.07 -1.73 2.08 -10.79 -0.02 -1.75 16 4 H 0.08 1.92 7.30 -2.39 -0.02 1.91 16 5 C -0.15 -4.19 7.15 71.98 0.51 -3.68 16 6 C -0.06 -1.70 2.36 -12.29 -0.03 -1.73 16 7 H 0.12 2.87 7.92 -2.38 -0.02 2.85 16 8 C 0.51 20.43 5.41 87.66 0.47 20.91 16 9 O -0.59 -29.54 14.04 -3.02 -0.04 -29.58 16 10 N -0.70 -29.46 4.97 -446.10 -2.22 -31.68 16 11 C 0.27 14.33 2.60 44.24 0.12 14.44 16 12 H 0.00 -0.31 7.51 -2.39 -0.02 -0.33 16 13 C -0.13 -6.84 9.26 71.98 0.67 -6.18 16 14 C -0.54 -29.02 8.73 25.60 0.22 -28.79 16 15 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 16 C 0.01 0.79 5.30 84.65 0.45 1.24 16 17 N -0.92 -53.30 11.32 21.45 0.24 -53.05 16 18 Si 0.97 42.17 29.54 68.60 2.03 44.20 16 19 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 C -0.07 -2.01 3.27 -19.86 -0.06 -2.08 16 23 C -0.10 -3.25 6.08 22.27 0.14 -3.11 16 24 C -0.14 -3.90 10.05 22.27 0.22 -3.68 16 25 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 26 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 27 C -0.12 -2.77 9.60 22.27 0.21 -2.55 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.87 6.78 -2.39 -0.02 0.86 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.18 7.34 -2.39 -0.02 1.17 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.73 5.65 -2.38 -0.01 1.72 16 34 H 0.07 1.69 6.99 -2.39 -0.02 1.67 16 35 H 0.02 0.86 6.59 -2.39 -0.02 0.84 16 36 H 0.40 14.21 7.63 -92.71 -0.71 13.50 16 37 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 40 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.10 3.68 5.36 -2.91 -0.02 3.66 16 42 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 43 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 44 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 45 H 0.14 2.53 7.98 -2.91 -0.02 2.50 16 Total: -1.00 -68.52 351.90 4.47 -64.04 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.27 Total: 31.55 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 4.20 Total: -25.48 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.98 Total: -84.73 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.04 Total: -29.58 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -68.52 4.47 -64.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250569189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.962 kcal (2) G-P(sol) polarization free energy of solvation -68.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds